Non-Coding RNA Search

Ss1.1-Pig4-TMW8048E04.3

Sequence:


               
               CCTGGCACATGAAGCCCGTTCTTGGAACTATGCAAAGGGCAGAGGCTGGGAGTTTGGATG
CTTGGCTCCCACCCCTGTCCTACCTCACCGGGACACTTTCAGGGTCCAGGAGCCTCTGAG
GTCTCCAGGCGCATATGGGACAATCAAAATCTGACTGAGCTCCCCCATTCCCCTTGGGTG
AGGACGACTGTTATTTTTGTAGCTGAGAACGTGGAATCCCACGGATTTTTACTGCCCTTC
AACCTCTCCCCCTTCCACCCCACAATGAATGTATTTATTGTGAGGCGGCTGCACTTCTTT
AAGAATGCCCCCGCTCACCACCCAGGCAGGCGGGACGGGCATGTGACAGAGTGGGGAGCC
TGGGCTCAGCTCCTTCTCCCACTGTTGGTTAATAAATACCCTCTTTCCCCACAGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGCACATGAAGCCCGTTCTTGGAACTATGCAAAGGGCAGAGGCTGGGAGTTTGGATG
CTTGGCTCCCACCCCTGTCCTACCTCACCGGGACACTTTCAGGGTCCAGGAGCCTCTGAG
GTCTCCAGGCGCATATGGGACAATCAAAATCTGACTGAGCTCCCCCATTCCCCTTGGGTG
AGGACGACTGTTATTTTTGTAGCTGAGAACGTGGAATCCCACGGATTTTTACTGCCCTTC
AACCTCTCCCCCTTCCACCCCACAATGAATGTATTTATTGTGAGGCGGCTGCACTTCTTT
AAGAATGCCCCCGCTCACCACCCAGGCAGGCGGGACGGGCATGTGACAGAGTGGGGAGCC
TGGGCTCAGCTCCTTCTCCCACTGTTGGTTAATAAATACCCTCTTTCCCCACAGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-414, - strand, RNAz p=0.985648

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-414, - strand, RNAz p=0.985648

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-414, gnl|bosTau2|chr26 (13390362-13390777)
               

               
               1-414, gnl|Hg17|chr10 (102734948-102735364)
               

               
               1-414, gnl|Mm7|chr19 (44896857-44897271)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-414, gnl|bosTau2|chr26 (13390362-13390777)
               

               
               1-414, gnl|Hg17|chr10 (102734948-102735364)
               

               
               1-414, gnl|Mm7|chr19 (44896857-44897271)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cag (0.151194)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               ebs (0.118301)

	1-414, gnl\|bosTau2\|chr26 (13390362-13390777)
	1-414, gnl\|Hg17\|chr10 (102734948-102735364)
	1-414, gnl\|Mm7\|chr19 (44896857-44897271)