Non-Coding RNA Search

Ss1.1-Pig4-TMW8048E09.5

Sequence:


               
               GCTGAAGGTTGGTTTGACCAAAAGAGTTACTGGTTAAATTTATAGAAATGTTGAAATTGG
CTAAGTTTTTAATTTTGCTTGAATTTTTATAAAATGTTTAACCCAATGTACCTTTGCATC
ATTTAATTAAAATTGCTTAAAAAATGTTTCATTATTTTGAAAAATGCTCAGCTCCCTTTT
TAAAATGCCCTTTATTTGCTAACAGTTCCGGTAAACTCAGGTGATGAGCCGATTAAATCT
TAGTGCACATGCTGTCGCATGGAAATAAATCATAAGCATCCATTGTCAACAATTATCTAT
GTAAGAGTCTAGTCTGATGACCTACAAAATATTTTCTGTAGAAATATACTATAAATCTGT
ATATTCCTTTCAAGGCTTTAAAAAGCCAAAAGGATAGGAAGATATGTACACTTTGGCAAC
TAAATTATTTCTATATCGGGGTTTAAAGCAAATGAGACCATCAGTGGGCAATAAATAATT
GGTTCCTAGAATAGCATGCAGACAGAAAAGGGGAGATTTGGTAGACATGGTTTATAAGCC
CAACTCTGCAGGCTCATCTGAGATTATTACTGATAAAGCAACAAAGGAAGAATAATATAG
AAGCATTATACTTAACAAAATTTAAATATTTTCTTCTACAAAAAATTGTTTAAAACAGTT
TTGTCCTTAAGAGGTAACCAGAGCACAAAGAGATAGCAAACACAATGGTTGTTTCTCTAT
CCCATACGATCATTAAAGGTATATGTAGAACACCTTAATTTCACAGTCTGTTATGCATTT
TTCCTCTTTACTCTTCATTAACAAAGTTCTTATGTTTACATTTTATAATGTGCACTATGG
GATATGAAAGTTTACATTAAAATTTAAATGTCATTAGGGAGGGATTAACTATATGTGATA
TTGATGAAGCCAAAAGAAATATTTTAAAAGAGTCATTTTCAAAAGTTTTTGAATTTGTAG
AAAGTACCTATGAATAACATTTCTGTTTGGTTCATGTTAGCTATATGATGAACATTTAGC
AGTTTACAGATTGCTTAATTTGTATCATACATTATCTAATAAATCCATTGTTCCATGATG
TGTCACGGAAGTATGAGGCCATTTTTTAAAAGTACAGTTTTGTGAATATCATCAATAAAA
TCAGTAGTTACGGATCTGAAGTTGAGAAGCACTAAGTAATATATACTGGTTGATTCCCCA
TTCATGTGTAAGAGCATATTAGCTCCAGTTATTTAAGTTGCTGTGTTATTTTGTGTTCAT
TGTGTATCAACTTAATTTTCTATCAACTGTCATTTTTCCCGTTGTATATAAAATGAACCA
ATCTTGTAATTATTTTCAAATAGAGAAGTAGATACATTTACCTGAGATGGATTTTATAAG
AAAAACCTTAAATCAATATTTCAAGCTATTTTATTTCATTTTTAAATTAATCTACAGATT
ATGCATAGCAAAGTAGAAACGTAGGATTAGAAAGCTTGAAGTATTTTTGAAAATAGGAAA
TAAGCTTCTTGGAGTTATAGTTGACTCAGTCTGTAGGTAAGAGACAGTCTGCAGTAATAA
CTAACCCAGGGAATTTACCGTAATTTGAGAGGTAACATCTCTATTTTTTTTCTAACGCAA
AAAGTTATAGTCACCAGCAAGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGAAGGTTGGTTTGACCAAAAGAGTTACTGGTTAAATTTATAGAAATGTTGAAATTGG
CTAAGTTTTTAATTTTGCTTGAATTTTTATAAAATGTTTAACCCAATGTACCTTTGCATC
ATTTAATTAAAATTGCTTAAAAAATGTTTCATTATTTTGAAAAATGCTCAGCTCCCTTTT
TAAAATGCCCTTTATTTGCTAACAGTTCCGGTAAACTCAGGTGATGAGCCGATTAAATCT
TAGTGCACATGCTGTCGCATGGAAATAAATCATAAGCATCCATTGTCAACAATTATCTAT
GTAAGAGTCTAGTCTGATGACCTACAAAATATTTTCTGTAGAAATATACTATAAATCTGT
ATATTCCTTTCAAGGCTTTAAAAAGCCAAAAGGATAGGAAGATATGTACACTTTGGCAAC
TAAATTATTTCTATATCGGGGTTTAAAGCAAATGAGACCATCAGTGGGCAATAAATAATT
GGTTCCTAGAATAGCATGCAGACAGAAAAGGGGAGATTTGGTAGACATGGTTTATAAGCC
CAACTCTGCAGGCTCATCTGAGATTATTACTGATAAAGCAACAAAGGAAGAATAATATAG
AAGCATTATACTTAACAAAATTTAAATATTTTCTTCTACAAAAAATTGTTTAAAACAGTT
TTGTCCTTAAGAGGTAACCAGAGCACAAAGAGATAGCAAACACAATGGTTGTTTCTCTAT
CCCATACGATCATTAAAGGTATATGTAGAACACCTTAATTTCACAGTCTGTTATGCATTT
TTCCTCTTTACTCTTCATTAACAAAGTTCTTATGTTTACATTTTATAATGTGCACTATGG
GATATGAAAGTTTACATTAAAATTTAAATGTCATTAGGGAGGGATTAACTATATGTGATA
TTGATGAAGCCAAAAGAAATATTTTAAAAGAGTCATTTTCAAAAGTTTTTGAATTTGTAG
AAAGTACCTATGAATAACATTTCTGTTTGGTTCATGTTAGCTATATGATGAACATTTAGC
AGTTTACAGATTGCTTAATTTGTATCATACATTATCTAATAAATCCATTGTTCCATGATG
TGTCACGGAAGTATGAGGCCATTTTTTAAAAGTACAGTTTTGTGAATATCATCAATAAAA
TCAGTAGTTACGGATCTGAAGTTGAGAAGCACTAAGTAATATATACTGGTTGATTCCCCA
TTCATGTGTAAGAGCATATTAGCTCCAGTTATTTAAGTTGCTGTGTTATTTTGTGTTCAT
TGTGTATCAACTTAATTTTCTATCAACTGTCATTTTTCCCGTTGTATATAAAATGAACCA
ATCTTGTAATTATTTTCAAATAGAGAAGTAGATACATTTACCTGAGATGGATTTTATAAG
AAAAACCTTAAATCAATATTTCAAGCTATTTTATTTCATTTTTAAATTAATCTACAGATT
ATGCATAGCAAAGTAGAAACGTAGGATTAGAAAGCTTGAAGTATTTTTGAAAATAGGAAA
TAAGCTTCTTGGAGTTATAGTTGACTCAGTCTGTAGGTAAGAGACAGTCTGCAGTAATAA
CTAACCCAGGGAATTTACCGTAATTTGAGAGGTAACATCTCTATTTTTTTTCTAACGCAA
AAAGTTATAGTCACCAGCAAGCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               304-422, - strand, RNAz p=0.998183

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               304-422, - strand, RNAz p=0.998183

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               304-412, DKFZp686O0785_r1 686 (synonym (emb|AL711970.1|), blast E-value=6e-28, 
identity=90.91% 
               

               
               304-412, EST367361 MAGE resequences, MAGC Homo sapiens cDNA, mRNA sequence 
(gb|AW955291.1|), blast E-value=2e-30, identity=91.82% 
               

               
               304-412, nab85f06.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapiens cDNA clone 
(gb|BF432085.1|), blast E-value=2e-30, identity=91.82% 
               

               
               304-422, hb08f02.g1 Canis cDNAs from testes cells Canis familiaris cDNA 
(gb|BM539371.1|), blast E-value=3e-36, identity=93.33% 
               

               
               304-412, K-EST0193148 L9SNU354 Homo sapiens cDNA clone L9SNU354-4-A07 5', 
(gb|CB140025.1|), blast E-value=2e-30, identity=91.82% 
               

               
               304-422, LIB3934-040-A1-K1-C6 LIB3934 Canis familiaris cDNA clone 
(gb|DN393010.1|), blast E-value=3e-36, identity=93.33%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               304-412, DKFZp686O0785_r1 686 (synonym (emb|AL711970.1|), blast E-value=6e-28, 
identity=90.91% 
               

               
               304-412, EST367361 MAGE resequences, MAGC Homo sapiens cDNA, mRNA sequence 
(gb|AW955291.1|), blast E-value=2e-30, identity=91.82% 
               

               
               304-412, nab85f06.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapiens cDNA clone 
(gb|BF432085.1|), blast E-value=2e-30, identity=91.82% 
               

               
               304-422, hb08f02.g1 Canis cDNAs from testes cells Canis familiaris cDNA 
(gb|BM539371.1|), blast E-value=3e-36, identity=93.33% 
               

               
               304-412, K-EST0193148 L9SNU354 Homo sapiens cDNA clone L9SNU354-4-A07 5', 
(gb|CB140025.1|), blast E-value=2e-30, identity=91.82% 
               

               
               304-422, LIB3934-040-A1-K1-C6 LIB3934 Canis familiaris cDNA clone 
(gb|DN393010.1|), blast E-value=3e-36, identity=93.33%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1337, gnl|bosTau2|chr9 (48846316-48844940)
               

               
               1-1337, gnl|Hg17|chr6 (147748423-147749812)
               

               
               1-1337, gnl|Mm7|chr10 (9459789-9458548)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1337, gnl|bosTau2|chr9 (48846316-48844940)
               

               
               1-1337, gnl|Hg17|chr6 (147748423-147749812)
               

               
               1-1337, gnl|Mm7|chr10 (9459789-9458548)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lin (0.145603)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lin (0.145603)

	304-412, DKFZp686O0785_r1 686 (synonym (emb\|AL711970.1\|), blast E-value=6e-28, identity=90.91%
	304-412, EST367361 MAGE resequences, MAGC Homo sapiens cDNA, mRNA sequence (gb\|AW955291.1\|), blast E-value=2e-30, identity=91.82%
	304-412, nab85f06.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapiens cDNA clone (gb\|BF432085.1\|), blast E-value=2e-30, identity=91.82%
	304-422, hb08f02.g1 Canis cDNAs from testes cells Canis familiaris cDNA (gb\|BM539371.1\|), blast E-value=3e-36, identity=93.33%
	304-412, K-EST0193148 L9SNU354 Homo sapiens cDNA clone L9SNU354-4-A07 5', (gb\|CB140025.1\|), blast E-value=2e-30, identity=91.82%
	304-422, LIB3934-040-A1-K1-C6 LIB3934 Canis familiaris cDNA clone (gb\|DN393010.1\|), blast E-value=3e-36, identity=93.33%

	1-1337, gnl\|bosTau2\|chr9 (48846316-48844940)
	1-1337, gnl\|Hg17\|chr6 (147748423-147749812)
	1-1337, gnl\|Mm7\|chr10 (9459789-9458548)

	cbe (0.239234)
	mgp (0.230681)
	fco (0.157208)
	fat (0.147427)
	lin (0.145603)