Ss1.1-Pig4-TMW8048E17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTGCGGGCGGAGGAGCCCGAGCCGGAGCCCGACCGGGAGCAGGGCTCGGGGCTCCGGG CTGCGGGACGGCCGGGCCCGGCCGCGATGGCGCCCCTGCGGGCCGGCCTGCTCCGTCTCG GCTCCACGCTCGGCCTGTCCTGCCTGGCGCTCTCCGTGCTGCTGCCCCTGCAGCTGTCAG ACGCCGCCAAGAACTCTGAAGATGTCCGATGCAAATGTATCTGTCCTCCCTATAAAGAGA ATTCTGGTTATATTTATAATAAGAACATATCCCAGAAGGACTGTGACTGCCTTCATGTTG TGGATCCCATGCCTGTGCGGGGGCCAGACGTGGAAGCATACTGTCTACGCTGCGAGTGCA AGTACGAGGAAAGAAGCTCCGTTACCATCAAGGTCACCATTATAATTTACCTCTCCATTC TGGGCCTTCTGCTCCTGTACATGGTGTATCTTACTCTGGTGGAGCCCATACTGAAGAGGC GTCTGTTTGGCCACTCTCAGCTGATGCAGAGCGACGACGACGTTGGGGATCACCAGCCTT TTGCAAATGCCCACGACGTGCTGGCCCGCTCCCGCAGCCGAGCCAACGTGCTGAACAAGG TGGAGTACGCCCAGCAGCGCTGGAAGCTTCAGGTTCAAGAGCAGCGAAAATCCGTCTTTG ACCGTCACGTTGTCCTCAGCTAAGTGGGAACCGCGTTCAAGGCGACTGGAAGAAATGAGG CAGACGGTGGGGAAAGCTGACTGTTTCCCGGGCTTTGGTTTTCATACCCTGTTGATTTCA CCAGCTCTTGCTGGAAAATTCAAAACTGGAAACAAAACCGTGCGTGGTCGTTTCTTTTCT CGTTCATGTATCACTGGAGACATCTGAAAAGCACACACCTCAGACAGAGTCGGCCACCAG GCCTTTCCCATCCGCGACTCTTTCTGATAAGTCTGCCTGCAGATCATCTTGACGTCCTTC ACCTGGAGAAAGCACCCTCTTTGACCACAAAGTTTTAACTTGGTTTTCAAGATAATTTTC AGGCGGAGTTTCTGCGCGGTGTCTTTTGGTTTGGTTTTTGGCAGGGGAGGGAGGGGTGCG TGGGACATGCTGACCGTAACTTTTCTCAAGTCGCTTTACTGAACAAACTTTTGTACGTAG ACGTTGCCTTTGTTTCCAAGTTTCGCCTGCATCTCGCGGCGGAGCGAGCCTGCTCCGAGC CCCGACTCACCCGTCGGAGTTGTGCGCTGTGTTAGCTGGACATCTGGTTGGCTGGGGCTG CACCTCATGCTGAACTGGATCTGAAATGCCTGGTGGCTTTTCGCAAGAGGCAGATTTTCT TTATACTGCGGTGTCTGATGCAATGCATCCTGGAACAAACTGGCCATTTGCTGCTTTACT TTAATGACCAGTCTCGGTTGTGAGCAGTCTCGTCTTCCTCTGGTATCTTTAAGGATGAAT CCTAAGGACGTGGACGCTTGCAATAAAGACACGTTCCTTTAAGCCCGAGCCTCTCCGAAT TGAAGACACACGCCTACTTGTCAGCATCCCAGTCAGGCTGGGAGGCGGCTCCTTGAGCTC CAGTGTGTGCAGCTCTGATGGACGACTGGAGTCCTGGCTGCCTCCCTTGGGGAAAAAAAG GTGTAACAGTTAGTGAATAACTGGCTTTTTCCTCCTATGTCCTCTTTGAAATGTAACAAT AAAAATGATTTTTGAAACGCTGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTGCGGGCGGAGGAGCCCGAGCCGGAGCCCGACCGGGAGCAGGGCTCGGGGCTCCGGG CTGCGGGACGGCCGGGCCCGGCCGCGATGGCGCCCCTGCGGGCCGGCCTGCTCCGTCTCG GCTCCACGCTCGGCCTGTCCTGCCTGGCGCTCTCCGTGCTGCTGCCCCTGCAGCTGTCAG ACGCCGCCAAGAACTCTGAAGATGTCCGATGCAAATGTATCTGTCCTCCCTATAAAGAGA ATTCTGGTTATATTTATAATAAGAACATATCCCAGAAGGACTGTGACTGCCTTCATGTTG TGGATCCCATGCCTGTGCGGGGGCCAGACGTGGAAGCATACTGTCTACGCTGCGAGTGCA AGTACGAGGAAAGAAGCTCCGTTACCATCAAGGTCACCATTATAATTTACCTCTCCATTC TGGGCCTTCTGCTCCTGTACATGGTGTATCTTACTCTGGTGGAGCCCATACTGAAGAGGC GTCTGTTTGGCCACTCTCAGCTGATGCAGAGCGACGACGACGTTGGGGATCACCAGCCTT TTGCAAATGCCCACGACGTGCTGGCCCGCTCCCGCAGCCGAGCCAACGTGCTGAACAAGG TGGAGTACGCCCAGCAGCGCTGGAAGCTTCAGGTTCAAGAGCAGCGAAAATCCGTCTTTG ACCGTCACGTTGTCCTCAGCTAAGTGGGAACCGCGTTCAAGGCGACTGGAAGAAATGAGG CAGACGGTGGGGAAAGCTGACTGTTTCCCGGGCTTTGGTTTTCATACCCTGTTGATTTCA CCAGCTCTTGCTGGAAAATTCAAAACTGGAAACAAAACCGTGCGTGGTCGTTTCTTTTCT CGTTCATGTATCACTGGAGACATCTGAAAAGCACACACCTCAGACAGAGTCGGCCACCAG GCCTTTCCCATCCGCGACTCTTTCTGATAAGTCTGCCTGCAGATCATCTTGACGTCCTTC ACCTGGAGAAAGCACCCTCTTTGACCACAAAGTTTTAACTTGGTTTTCAAGATAATTTTC AGGCGGAGTTTCTGCGCGGTGTCTTTTGGTTTGGTTTTTGGCAGGGGAGGGAGGGGTGCG TGGGACATGCTGACCGTAACTTTTCTCAAGTCGCTTTACTGAACAAACTTTTGTACGTAG ACGTTGCCTTTGTTTCCAAGTTTCGCCTGCATCTCGCGGCGGAGCGAGCCTGCTCCGAGC CCCGACTCACCCGTCGGAGTTGTGCGCTGTGTTAGCTGGACATCTGGTTGGCTGGGGCTG CACCTCATGCTGAACTGGATCTGAAATGCCTGGTGGCTTTTCGCAAGAGGCAGATTTTCT TTATACTGCGGTGTCTGATGCAATGCATCCTGGAACAAACTGGCCATTTGCTGCTTTACT TTAATGACCAGTCTCGGTTGTGAGCAGTCTCGTCTTCCTCTGGTATCTTTAAGGATGAAT CCTAAGGACGTGGACGCTTGCAATAAAGACACGTTCCTTTAAGCCCGAGCCTCTCCGAAT TGAAGACACACGCCTACTTGTCAGCATCCCAGTCAGGCTGGGAGGCGGCTCCTTGAGCTC CAGTGTGTGCAGCTCTGATGGACGACTGGAGTCCTGGCTGCCTCCCTTGGGGAAAAAAAG GTGTAACAGTTAGTGAATAACTGGCTTTTTCCTCCTATGTCCTCTTTGAAATGTAACAAT AAAAATGATTTTTGAAACGCTGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 935-1651, + strand, RNAz p=0.999903 | |
| 1276-1372, - strand, RNAz p=0.943036 | |
| 1465-1648, - strand, RNAz p=0.984762 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 935-1651, + strand, RNAz p=0.999903 | |
| 1276-1372, - strand, RNAz p=0.943036 | |
| 1465-1648, - strand, RNAz p=0.984762 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC040124, + | |
| 5' of BC040124, - |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-191, gnl|bosTau2|chr15 (30494509-30494318) | |
| 1-191, gnl|Hg17|chr11 (8942559-8942332) | |
| 1-191, gnl|Mm7|chr7 (105667528-105667342) | |
| 283-394, gnl|bosTau2|chr15 (30484430-30484319) | |
| 283-394, gnl|canFam2|chr21 (35502173-35502283) | |
| 283-394, gnl|danRer3|chr14 (20476936-20477046) | |
| 283-394, gnl|dasNov1|scaffold_55554 (11787-11677) | |
| 283-394, gnl|echTel1|scaffold_302529 (10732-10622) | |
| 283-394, gnl|fr1|chrUn (291706981-291707091) | |
| 283-394, gnl|galGal2|chr5 (7082088-7081978) | |
| 283-394, gnl|hg17|chr11 (8934312-8934422) | |
| 283-394, gnl|Hg17|chr11 (8934422-8934311) | |
| 283-394, gnl|loxAfr1|scaffold_53589 (6949-6839) | |
| 283-394, gnl|mm7|chr7 (105660580-105660690) | |
| 283-394, gnl|Mm7|chr7 (105660690-105660579) | |
| 283-394, gnl|monDom2|scaffold_10 (59077446-59077556) | |
| 283-394, gnl|oryCun1|scaffold_201973 (71187-71077) | |
| 283-394, gnl|panTro1|chr9_random (40561020-40561130) | |
| 283-394, gnl|rheMac2|chr12 (56401393-56401503) | |
| 283-394, gnl|rn3|chr1 (167477773-167477883) | |
| 283-394, gnl|tetNig1|chr5 (6445781-6445671) | |
| 520-1197, gnl|bosTau2|chr15 (30477629-30476937) | |
| 520-1197, gnl|Hg17|chr11 (8926606-8925934) | |
| 520-1197, gnl|Mm7|chr7 (105652270-105651622) | |
| 1227-1698, gnl|bosTau2|chr15 (30476803-30476334) | |
| 1227-1698, gnl|canFam2|chr21 (35494262-35494779) | |
| 1227-1698, gnl|echTel1|scaffold_302529 (18013-17521) | |
| 1227-1698, gnl|galGal2|chr5 (7087264-7086747) | |
| 1227-1698, gnl|hg17|chr11 (8925385-8925917) | |
| 1227-1698, gnl|Hg17|chr11 (8925889-8925420) | |
| 1227-1698, gnl|loxAfr1|scaffold_3850 (9831-10370) | |
| 1227-1698, gnl|mm7|chr7 (105651083-105651600) | |
| 1227-1698, gnl|Mm7|chr7 (105651572-105651109) | |
| 1227-1698, gnl|monDom2|scaffold_10 (59070141-59070676) | |
| 1227-1698, gnl|panTro1|chr9_random (40309623-40310151) | |
| 1227-1698, gnl|rheMac2|chr14 (63006861-63006347) | |
| 1227-1698, gnl|rn3|chr1 (167465158-167465671) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-191, gnl|bosTau2|chr15 (30494509-30494318) | |
| 1-191, gnl|Hg17|chr11 (8942559-8942332) | |
| 1-191, gnl|Mm7|chr7 (105667528-105667342) | |
| 283-394, gnl|bosTau2|chr15 (30484430-30484319) | |
| 283-394, gnl|canFam2|chr21 (35502173-35502283) | |
| 283-394, gnl|danRer3|chr14 (20476936-20477046) | |
| 283-394, gnl|dasNov1|scaffold_55554 (11787-11677) | |
| 283-394, gnl|echTel1|scaffold_302529 (10732-10622) | |
| 283-394, gnl|fr1|chrUn (291706981-291707091) | |
| 283-394, gnl|galGal2|chr5 (7082088-7081978) | |
| 283-394, gnl|hg17|chr11 (8934312-8934422) | |
| 283-394, gnl|Hg17|chr11 (8934422-8934311) | |
| 283-394, gnl|loxAfr1|scaffold_53589 (6949-6839) | |
| 283-394, gnl|mm7|chr7 (105660580-105660690) | |
| 283-394, gnl|Mm7|chr7 (105660690-105660579) | |
| 283-394, gnl|monDom2|scaffold_10 (59077446-59077556) | |
| 283-394, gnl|oryCun1|scaffold_201973 (71187-71077) | |
| 283-394, gnl|panTro1|chr9_random (40561020-40561130) | |
| 283-394, gnl|rheMac2|chr12 (56401393-56401503) | |
| 283-394, gnl|rn3|chr1 (167477773-167477883) | |
| 283-394, gnl|tetNig1|chr5 (6445781-6445671) | |
| 520-1197, gnl|bosTau2|chr15 (30477629-30476937) | |
| 520-1197, gnl|Hg17|chr11 (8926606-8925934) | |
| 520-1197, gnl|Mm7|chr7 (105652270-105651622) | |
| 1227-1698, gnl|bosTau2|chr15 (30476803-30476334) | |
| 1227-1698, gnl|canFam2|chr21 (35494262-35494779) | |
| 1227-1698, gnl|echTel1|scaffold_302529 (18013-17521) | |
| 1227-1698, gnl|galGal2|chr5 (7087264-7086747) | |
| 1227-1698, gnl|hg17|chr11 (8925385-8925917) | |
| 1227-1698, gnl|Hg17|chr11 (8925889-8925420) | |
| 1227-1698, gnl|loxAfr1|scaffold_3850 (9831-10370) | |
| 1227-1698, gnl|mm7|chr7 (105651083-105651600) | |
| 1227-1698, gnl|Mm7|chr7 (105651572-105651109) | |
| 1227-1698, gnl|monDom2|scaffold_10 (59070141-59070676) | |
| 1227-1698, gnl|panTro1|chr9_random (40309623-40310151) | |
| 1227-1698, gnl|rheMac2|chr14 (63006861-63006347) | |
| 1227-1698, gnl|rn3|chr1 (167465158-167465671) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| ute (0.531138) | |
| cty (0.5204) | |
| nmm (0.398406) | |
| cov (0.396458) | |
| hyp (0.285673) | |
| che (0.272628) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| spl (0.143184) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.531138) | |
| cty (0.5204) | |
| nmm (0.398406) | |
| cov (0.396458) | |
| hyp (0.285673) | |
| che (0.272628) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| spl (0.143184) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |