Non-Coding RNA Search

Ss1.1-Pig4-TMW8048G04.5.5

Sequence:


               
               TAAAACTTACAACCTCAGTCCACGAGACTGCCTGAAGACCTGCTTGTTTCAGAAGTGGCA
GCGGATGGTGGCACCGCCAGAACCCACAAGGCAACCAACAACTAAACGGAGAAAAAGGAA
AAACTCCACCAGCAGCACGTCCAACAGCAGCGCTGGGAACAACGCCAACAGCACGGGCAG
CAAGAAGAAGACGCCGGCCGCCAACCTGAGTCTGTCCAGTCAGGTACCTGATGTGATGGT
GGTAGGAGAGCCAACTCTGATGGGAGGTGAGTTTGGGGACGAGGACGAAAGGCTAATCAC
TAGATTAGAAAACACGCAGTATGATGCGGCCAACGGCATGGACGACGAAGAAGACTTCAC
CCATTCACCCGCCCTGGGGAACAGCAGCCCTTGGAGCAGTAAACCTCCCGCCACTCAAGA
GACCAAATCAGAAAACCCCCCGCCCCAGGCTTCCCAGTAAGATTGAGGGGCGCCAGAATC
CGTGTCACTTGCCCCGTGGGTTACACTCACTAGTTCACATCCTTACTTACCAGGAGAAGA
AGGAGGAGACTTTCAAACCGTCCCACGTCAATACCGATTTCTAAACCACAATGATCCGAG
TTTCTTGCTTTGCTTTTTTTTTTTTTTTAATTGAAAGGATCATTCCAAATACACTTCCAT
GACCCCTCCCGGGAGGCCTTGACAGGTAACACAGATACTGGCACGGATCGTAATTAAAAC
CAGAGCGAAGGCTAGGGCTTCTCTTGGCTCGGTTTTGCCCACGTTTGTTAAATGTCCTCC
CCCCGCCCCACCCCGCCTGCATCCAGCCAAGGCCATACCGTCAATCAAGCCTCCGTGCTC
AGAATCGCATTCTATGCCGAACCCAACTACAGATGACTTTTTAATATTGTAAAATATTTT
CTGCTTTTTTGACTTGCATCTGAGAGTTTCTTGTTTCAGTAAAAAAAGAAAAGGAAAAAA
AATCCGCTTTTGGAAAGTAATTTAAATGTACCTTTATATATTTGTTTCCTTCATCCTTTT
TGTTCATTGGGGAACAGCTAAGAGGGCCCAGCAGGGTAATTTATGGCCAAGCTAATGTCA
GGTGGTCCTCGAGCCCGAGGAGGTTCAACGGAGCCCGAGTGCTGAAACAAGAAATGTCTT
TTTGTCATCAAAGACACCAAGGCAGACGTTTATGTAAAGAAAGGTGCTTGGCCCCTTGAG
AATGTATGCGTTTGTAAAATTGCTGTTGATCCAAATATTTTCAAGCCATGTAATCCATTC
ATTTTGTGGGCAGTTGAATAAATCTGAAATTCTTTTTGTGGGTTTTTTTTTTTTTTTTGT
ATTGTATCTGAGTTGACTGTTGTTTCTTTTTCATAGTATATTACCTGTATAATATTTTGT
AAAGCCCTCACCTGGTTCTTTTATGGGGACTTTTCTTTGGGGGCAATTCCAGTGTATTTA
TGTGAAACTTTATAAAAGAACTAATTTTTCCATTTGCATATTAATATGTTCCTCCACCCT
TGTAAAGACACAGTGGCTCCGTGTGTTACAAAACAGCTGTATTTTATGTATGCTTTACTG
ATAAGTGTGCCAATAATAAACTGTGTTAACGACCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAACTTACAACCTCAGTCCACGAGACTGCCTGAAGACCTGCTTGTTTCAGAAGTGGCA
GCGGATGGTGGCACCGCCAGAACCCACAAGGCAACCAACAACTAAACGGAGAAAAAGGAA
AAACTCCACCAGCAGCACGTCCAACAGCAGCGCTGGGAACAACGCCAACAGCACGGGCAG
CAAGAAGAAGACGCCGGCCGCCAACCTGAGTCTGTCCAGTCAGGTACCTGATGTGATGGT
GGTAGGAGAGCCAACTCTGATGGGAGGTGAGTTTGGGGACGAGGACGAAAGGCTAATCAC
TAGATTAGAAAACACGCAGTATGATGCGGCCAACGGCATGGACGACGAAGAAGACTTCAC
CCATTCACCCGCCCTGGGGAACAGCAGCCCTTGGAGCAGTAAACCTCCCGCCACTCAAGA
GACCAAATCAGAAAACCCCCCGCCCCAGGCTTCCCAGTAAGATTGAGGGGCGCCAGAATC
CGTGTCACTTGCCCCGTGGGTTACACTCACTAGTTCACATCCTTACTTACCAGGAGAAGA
AGGAGGAGACTTTCAAACCGTCCCACGTCAATACCGATTTCTAAACCACAATGATCCGAG
TTTCTTGCTTTGCTTTTTTTTTTTTTTTAATTGAAAGGATCATTCCAAATACACTTCCAT
GACCCCTCCCGGGAGGCCTTGACAGGTAACACAGATACTGGCACGGATCGTAATTAAAAC
CAGAGCGAAGGCTAGGGCTTCTCTTGGCTCGGTTTTGCCCACGTTTGTTAAATGTCCTCC
CCCCGCCCCACCCCGCCTGCATCCAGCCAAGGCCATACCGTCAATCAAGCCTCCGTGCTC
AGAATCGCATTCTATGCCGAACCCAACTACAGATGACTTTTTAATATTGTAAAATATTTT
CTGCTTTTTTGACTTGCATCTGAGAGTTTCTTGTTTCAGTAAAAAAAGAAAAGGAAAAAA
AATCCGCTTTTGGAAAGTAATTTAAATGTACCTTTATATATTTGTTTCCTTCATCCTTTT
TGTTCATTGGGGAACAGCTAAGAGGGCCCAGCAGGGTAATTTATGGCCAAGCTAATGTCA
GGTGGTCCTCGAGCCCGAGGAGGTTCAACGGAGCCCGAGTGCTGAAACAAGAAATGTCTT
TTTGTCATCAAAGACACCAAGGCAGACGTTTATGTAAAGAAAGGTGCTTGGCCCCTTGAG
AATGTATGCGTTTGTAAAATTGCTGTTGATCCAAATATTTTCAAGCCATGTAATCCATTC
ATTTTGTGGGCAGTTGAATAAATCTGAAATTCTTTTTGTGGGTTTTTTTTTTTTTTTTGT
ATTGTATCTGAGTTGACTGTTGTTTCTTTTTCATAGTATATTACCTGTATAATATTTTGT
AAAGCCCTCACCTGGTTCTTTTATGGGGACTTTTCTTTGGGGGCAATTCCAGTGTATTTA
TGTGAAACTTTATAAAAGAACTAATTTTTCCATTTGCATATTAATATGTTCCTCCACCCT
TGTAAAGACACAGTGGCTCCGTGTGTTACAAAACAGCTGTATTTTATGTATGCTTTACTG
ATAAGTGTGCCAATAATAAACTGTGTTAACGACCAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               230-460, gnl|bosTau2|chr26 (14390095-14390325)
               

               
               230-460, gnl|Hg17|chr10 (103858070-103857839)
               

               
               230-460, gnl|Mm7|chr19 (45929975-45929745)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               230-460, gnl|bosTau2|chr26 (14390095-14390325)
               

               
               230-460, gnl|Hg17|chr10 (103858070-103857839)
               

               
               230-460, gnl|Mm7|chr19 (45929975-45929745)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               elu (0.385356)
               

               
               spl (0.286369)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               spl (0.286369)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)

	230-460, gnl\|bosTau2\|chr26 (14390095-14390325)
	230-460, gnl\|Hg17\|chr10 (103858070-103857839)
	230-460, gnl\|Mm7\|chr19 (45929975-45929745)

	elu (0.385356)
	spl (0.286369)
	cmu (0.186393)
	fbs (0.175346)
	sin (0.174948)
	cut (0.169924)
	fco (0.157208)
	lun (0.150489)
	fat (0.147427)
	hyp (0.142837)
	pla (0.133672)
	tra (0.123092)
	clu (0.119646)
	nbm (0.0993246)