Non-Coding RNA Search

Ss1.1-Pig4-TMW8048G21.5

Sequence:


               
               GCAAAACGAAAGCGGAGCTTCTCCGAAAAGCTCCGAAGGCCTCCGGTTTCAGAGCGCGGC
GGACTCTGCTCCCAGCATATTGAAGCAGAGCGCGGTCGGAGCAGGTGACCAGCCGCACAG
AGCCGTCCAGCTGCCACCCTCCCAGATTCAGCTCGGGGCCAGAGCCCCCGAGCCGCCCCT
GGACCCGAAGCTGTCCACCATCGCGGAACAGCGCCTGAGCCCGGCCTCCCAGGACCAGAC
GGAGCTGCAGAGACACGGCGCTGGCATCTCCGTCATCCAGCACACCAACTCCCTGAGCAG
ACCCGGGTCCTTCGACAAGCTCGAGCCTCGTGAAGGGGCTTCCCCAGCTTCCTTCCAGGA
GCTGAGCAGAGCAGCCCAGCCTGGGGCTCTGAGCCTCGCAGCCATCTCCCAAGAGGAGGG
CCGCCCTCCCCGGAAGCCGTCCCACCCGCGCCAGCCTGCGCCGTCCGATGCGCCGAGAGG
AGAACTGCAGGAAGGGGCGAGAAAGATCTCCAGCGAACGGCATGTGCTAGGCCAGCCCTC
TAGACTTGTTCGGCAGCACAACATCCAAGTGCCAGAAATTCTGGTCACGGAAGAGCCAGA
TCGGGACCTCGAAGGCCAAGGCCACGATCAGGAACGATCAGAGAAGTTCAGCTGGCCCCA
GCGGAGTGAAACCTTGTCCAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAAACGAAAGCGGAGCTTCTCCGAAAAGCTCCGAAGGCCTCCGGTTTCAGAGCGCGGC
GGACTCTGCTCCCAGCATATTGAAGCAGAGCGCGGTCGGAGCAGGTGACCAGCCGCACAG
AGCCGTCCAGCTGCCACCCTCCCAGATTCAGCTCGGGGCCAGAGCCCCCGAGCCGCCCCT
GGACCCGAAGCTGTCCACCATCGCGGAACAGCGCCTGAGCCCGGCCTCCCAGGACCAGAC
GGAGCTGCAGAGACACGGCGCTGGCATCTCCGTCATCCAGCACACCAACTCCCTGAGCAG
ACCCGGGTCCTTCGACAAGCTCGAGCCTCGTGAAGGGGCTTCCCCAGCTTCCTTCCAGGA
GCTGAGCAGAGCAGCCCAGCCTGGGGCTCTGAGCCTCGCAGCCATCTCCCAAGAGGAGGG
CCGCCCTCCCCGGAAGCCGTCCCACCCGCGCCAGCCTGCGCCGTCCGATGCGCCGAGAGG
AGAACTGCAGGAAGGGGCGAGAAAGATCTCCAGCGAACGGCATGTGCTAGGCCAGCCCTC
TAGACTTGTTCGGCAGCACAACATCCAAGTGCCAGAAATTCTGGTCACGGAAGAGCCAGA
TCGGGACCTCGAAGGCCAAGGCCACGATCAGGAACGATCAGAGAAGTTCAGCTGGCCCCA
GCGGAGTGAAACCTTGTCCAAACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               561-680, - strand, RNAz p=0.594878

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               561-680, - strand, RNAz p=0.594878

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               568-639, - strand, RNAmicro p=0.906388

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               568-639, - strand, RNAmicro p=0.906388

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-684, gnl|bosTau2|chr23 (33799076-33798406)
               

               
               2-684, gnl|Hg17|chr6 (12231147-12231829)
               

               
               2-684, gnl|Mm7|chr13 (41598163-41598818)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-684, gnl|bosTau2|chr23 (33799076-33798406)
               

               
               2-684, gnl|Hg17|chr6 (12231147-12231829)
               

               
               2-684, gnl|Mm7|chr13 (41598163-41598818)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	2-684, gnl\|bosTau2\|chr23 (33799076-33798406)
	2-684, gnl\|Hg17\|chr6 (12231147-12231829)
	2-684, gnl\|Mm7\|chr13 (41598163-41598818)