Non-Coding RNA Search

Ss1.1-Pig4-TMW8048H06.5.5

Sequence:


               
               TTCAAATAACTGAAATTTAAGGTATTTTATTTCTCTTATTATAAGGAAAGCATGAAAAAT
CTTTCAGAGAGGAAGAGAGAATGCGTCTTAATGACCTAGTACATTTTAATACTCTGATTT
ACTAGGGTGACTCAAAAGTTTGAGAAGAGGAAAAGAAAATTCCTTGTATCATTTCTTGAT
CTTATTAGACCCAAACACAGCAAGCTTGCCAAATTATACAGATATAGCTCTCATTTTGTC
AGTATATATTTCTAAATTTCTAATGCTTCCCGCAGTAGCTGAGCTTTGGGAATAACAAAA
ACCAGATACTTTCAAAACATTTCTTGTGATGAAGTGGAAAAAGCCTGGATTAGTAGCCAG
TAAAATTGGATTTTTGTCTCAGATTTTCTACTAGCTTTTTGGTTTTAGCAAATCCCTTAA
TTTCCGGCTCTTGCATATTGCAGTAGCAGAAGCAGCCCAAGGGTGCTGTGGTATTCAAAT
GAGGTAACTTAGATAAAAACACCTTGAAATTCTGAAAGTGCTAGGTAATGACTAAGTTCC
AGAGGATACAATGTGAGAGCTAAGCTGACTAATAAAAGGAATCTTATTATGTAAAAGCCC
AGACTCATTATAAGTTTGTCTCATCTTTCTCTTTCATGCTATATATTTAACAGAATGGGT
TATATATAAAAAAAGCAGAGGAGGCAGAGCCTGGGACAGCTCAAAGGCATTACTCATTGC
TGTTTTAGGAGCAAGTTAAAGGCCAGTTGCTGGGCCATAACCCCTGCTGGGGAGCACCTA
TTTGTCAAAGTGCACAGGCACCTCTGGATTACCCTCACAGGCAATGACAACCCGTCTAGT
GCTGGCCATGGCCCGGTATCTGCAGTTGGGAGCCCTGGAACTTCCTGTCTCCCTGCAGTC
TGTGACCTTCACCACGCCCTCATGGCAGTTCATCTGGCCATTCTTGCACTGAATATTGGA
GGTGCTGCAGATACTACGAATGTTCCAAATGTCTTCATGAATGAAAGTGTTGAAGCGCTT
GCAATAATGTGAAGTCATCTTCCGTCTTTGCATCATCAAGTTGCAGTAGGCATCATTGCC
ACCTGTCGCATCAGGGTCCACGTGTTGCCGCAGGAATCGTTGGTACATGCGATCCTGGCC
ATAGGAGGGCTGTACCAGCCCCAGCCCCAGCAGGGTCAGCAGCAAGAGCAGAAGTAACAC
ATGGGTCCTCTGGAGAGCCATCACTACCTTGGAGGTGCCTCGGCCTCGGAACAAGTCTGC
AGAAAAGGGCAGGACCGTGGAAAGAGCAGCTTTTGTTTTTCACCCGCTTCTTCCTCCCGG
TAAAGACGTTGGGCAGTCGGTAGAAACGCAAAGGTGCAAAGAGGCGAGGAGGGTCGGAGG
GCGAGCCTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAAATAACTGAAATTTAAGGTATTTTATTTCTCTTATTATAAGGAAAGCATGAAAAAT
CTTTCAGAGAGGAAGAGAGAATGCGTCTTAATGACCTAGTACATTTTAATACTCTGATTT
ACTAGGGTGACTCAAAAGTTTGAGAAGAGGAAAAGAAAATTCCTTGTATCATTTCTTGAT
CTTATTAGACCCAAACACAGCAAGCTTGCCAAATTATACAGATATAGCTCTCATTTTGTC
AGTATATATTTCTAAATTTCTAATGCTTCCCGCAGTAGCTGAGCTTTGGGAATAACAAAA
ACCAGATACTTTCAAAACATTTCTTGTGATGAAGTGGAAAAAGCCTGGATTAGTAGCCAG
TAAAATTGGATTTTTGTCTCAGATTTTCTACTAGCTTTTTGGTTTTAGCAAATCCCTTAA
TTTCCGGCTCTTGCATATTGCAGTAGCAGAAGCAGCCCAAGGGTGCTGTGGTATTCAAAT
GAGGTAACTTAGATAAAAACACCTTGAAATTCTGAAAGTGCTAGGTAATGACTAAGTTCC
AGAGGATACAATGTGAGAGCTAAGCTGACTAATAAAAGGAATCTTATTATGTAAAAGCCC
AGACTCATTATAAGTTTGTCTCATCTTTCTCTTTCATGCTATATATTTAACAGAATGGGT
TATATATAAAAAAAGCAGAGGAGGCAGAGCCTGGGACAGCTCAAAGGCATTACTCATTGC
TGTTTTAGGAGCAAGTTAAAGGCCAGTTGCTGGGCCATAACCCCTGCTGGGGAGCACCTA
TTTGTCAAAGTGCACAGGCACCTCTGGATTACCCTCACAGGCAATGACAACCCGTCTAGT
GCTGGCCATGGCCCGGTATCTGCAGTTGGGAGCCCTGGAACTTCCTGTCTCCCTGCAGTC
TGTGACCTTCACCACGCCCTCATGGCAGTTCATCTGGCCATTCTTGCACTGAATATTGGA
GGTGCTGCAGATACTACGAATGTTCCAAATGTCTTCATGAATGAAAGTGTTGAAGCGCTT
GCAATAATGTGAAGTCATCTTCCGTCTTTGCATCATCAAGTTGCAGTAGGCATCATTGCC
ACCTGTCGCATCAGGGTCCACGTGTTGCCGCAGGAATCGTTGGTACATGCGATCCTGGCC
ATAGGAGGGCTGTACCAGCCCCAGCCCCAGCAGGGTCAGCAGCAAGAGCAGAAGTAACAC
ATGGGTCCTCTGGAGAGCCATCACTACCTTGGAGGTGCCTCGGCCTCGGAACAAGTCTGC
AGAAAAGGGCAGGACCGTGGAAAGAGCAGCTTTTGTTTTTCACCCGCTTCTTCCTCCCGG
TAAAGACGTTGGGCAGTCGGTAGAAACGCAAAGGTGCAAAGAGGCGAGGAGGGTCGGAGG
GCGAGCCTTTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               RNAS4_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               RNAS4_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               731-850, - strand, RNAz p=0.909609

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               731-850, - strand, RNAz p=0.909609

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_194430, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_194430, -

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               4-1197, gnl|bosTau2|chr10 (16902745-16903964)
               

               
               4-1197, gnl|Hg17|chr14 (20238596-20237395)
               

               
               4-1197, gnl|Mm7|chr14 (46440030-46438746)
               


               
               1238-1391, gnl|bosTau2|chr10 (16783851-16783994)
               

               
               1238-1391, gnl|Hg17|chr14 (20222758-20222528)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1197, gnl|bosTau2|chr10 (16902745-16903964)
               

               
               4-1197, gnl|Hg17|chr14 (20238596-20237395)
               

               
               4-1197, gnl|Mm7|chr14 (46440030-46438746)
               


               
               1238-1391, gnl|bosTau2|chr10 (16783851-16783994)
               

               
               1238-1391, gnl|Hg17|chr14 (20222758-20222528)

Expressed library(ies): 39 entry(ies)

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Expressed library(ies): 39 entry(ies)

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               lun (2.40783)
               

               
               fat (1.76913)
               

               
               sug (1.01833)
               

               
               tra (0.738552)
               

               
               gul (0.710353)
               

               
               jca (0.683761)
               

               
               mga (0.64082)
               

               
               ski (0.586941)
               

               
               nep (0.551775)
               

               
               rec (0.519211)
               

               
               spc (0.453463)
               

               
               hea (0.408998)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               eru (0.360144)
               

               
               sin (0.349895)
               

               
               isp (0.300752)
               

               
               liv (0.292569)
               

               
               ssp (0.271039)
               

               
               nmm (0.265604)
               

               
               bla (0.248694)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               cbl (0.229595)
               

               
               cty (0.20816)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eje (0.0988338)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (2.40783)
               

               
               fat (1.76913)
               

               
               sug (1.01833)
               

               
               tra (0.738552)
               

               
               gul (0.710353)
               

               
               jca (0.683761)
               

               
               mga (0.64082)
               

               
               ski (0.586941)
               

               
               nep (0.551775)
               

               
               rec (0.519211)
               

               
               spc (0.453463)
               

               
               hea (0.408998)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               eru (0.360144)
               

               
               sin (0.349895)
               

               
               isp (0.300752)
               

               
               liv (0.292569)
               

               
               ssp (0.271039)
               

               
               nmm (0.265604)
               

               
               bla (0.248694)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               cbl (0.229595)
               

               
               cty (0.20816)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eje (0.0988338)

	4-1197, gnl\|bosTau2\|chr10 (16902745-16903964)
	4-1197, gnl\|Hg17\|chr14 (20238596-20237395)
	4-1197, gnl\|Mm7\|chr14 (46440030-46438746)

	1238-1391, gnl\|bosTau2\|chr10 (16783851-16783994)
	1238-1391, gnl\|Hg17\|chr14 (20222758-20222528)

	lun (2.40783)
	fat (1.76913)
	sug (1.01833)
	tra (0.738552)
	gul (0.710353)
	jca (0.683761)
	mga (0.64082)
	ski (0.586941)
	nep (0.551775)
	rec (0.519211)
	spc (0.453463)
	hea (0.408998)
	aor (0.390549)
	ret (0.3862)
	eru (0.360144)
	sin (0.349895)
	isp (0.300752)
	liv (0.292569)
	ssp (0.271039)
	nmm (0.265604)
	bla (0.248694)
	clu (0.239292)
	pgl (0.236967)
	med (0.232504)
	cbl (0.229595)
	cty (0.20816)
	nlu (0.191681)
	mgm (0.180343)
	sto (0.179824)
	mcp (0.170648)
	nco (0.161734)
	cag (0.151194)
	csk (0.140746)
	cst (0.140036)
	ute (0.132784)
	ova (0.129132)
	eep (0.122564)
	cly (0.120642)
	eje (0.0988338)