Non-Coding RNA Search

Ss1.1-Pig4-TMW8048I06.5

Sequence:


               
               CCTCGAAGAGCCCGGCCAGCTCGCCCGCCTCGGGCCGCACCGCGCTGCCTTTGCGGAGCC
GTCCCGCGCCCCCCAGTGCCCTCGCCATGAAGCCCACCTTTTCCCTGCGACTGAAGATCT
TTAACCTCAACTGCTGGGGCATTCCCTTCCTGAGCAAGCACCGGGCCGACCGCGTCAAGC
GCCTGGGAGACTTTCTGAACATGGAGAGCTTCGACCTTGTTCTGCTGGAGGAGGTGTGGA
GTGAGCAGGATTTCCAGTACCTGAGGCAGAAGCTGTTGCCCACCTACCCAGCTGCACACT
ACTTCAGGAGTGGCATCATTGGCAGTGGTCTCTGTGTCTTCTCCAAACACCCAATCCAGG
AATTCACCCAGCACGTCTTCACCCTCAATGGCTATCCTTACATGGTCCACCATGGTGACT
GGTTCTGTGGGAAAGCTGTGGGGCTGCTGGTGCTCCATCTAAGTGGATTGGTGCTCAATG
CCTACGTGACCCATCTCCATGCCGAGTACAGTCGACAGAAGGACATCTACTTAGCACATC
GTGTGGCCCAAGCTTGGGAACTGGCCCAGTTCATCCACCACACATCCAAGAAAGCTGATG
TGGTTCTATTATGTGGGGACCTCAACTTGCACCCAAAAGACCTGGGCTGCCGCCTGCTGA
AGGAATGGACGGGGCTGCATGATGCCTTTCTTGAGACCCGGGACTTCAAGGGCTCTGAAG
AAGGTTGTACGATGGTGCCTGAGAACTGCTACGTCAACCAGCGGGAGCTGGAGCAATTCC
CCGTGGGCATCCGCATCGACTATGTGCTTTATAAGGCGGTATCTGGGCTATACATCTCCT
GTAAGACTTTGAAAACTACTACAGGCAGTGATCCTCACAGTGGCACCCCCCTCTCTGATC
ATGAGGCCCTGATGGCTACTCTGTGTGTGAGACACAGCCCCCCCCAGCACAACCCCAGCC
CTACCCATGGACCAGCAGAGAGGTCACCACTGATTAATGTGCTGAGAGAGGCCTGGACAG
AGGTGGACCAGGGCCTGGCTCAGGCTCGCTGGTGGGCCACCATCGCTGGCTATGTGATTG
GTCTGGGGCTGATTCTCCTGGTGTTGCTGTGTGCCCTGGCTGCTGGAGGAGGGATCAAGG
AAATTGCCATACTGCTCTGGACCCCCAATGTAGGACTGGTGCTGGGGGCAGGAGCATTCT
ACCTCTTCCACATGCAGGAGGCCAAGAGTTTGTGTAGGGTCCGGGCCGAGCTCCAGCATG
TGCTGGGAAGGGCAAGGGAGACCCAGGACCTGAGTCCAGAGTCCGAGCAAGCCTTGCTCC
TGGGGCAGCAGGAGGGGGACAGAGCTGAGGAACAATAAAGCCTGATGCCTCTGTGAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCGAAGAGCCCGGCCAGCTCGCCCGCCTCGGGCCGCACCGCGCTGCCTTTGCGGAGCC
GTCCCGCGCCCCCCAGTGCCCTCGCCATGAAGCCCACCTTTTCCCTGCGACTGAAGATCT
TTAACCTCAACTGCTGGGGCATTCCCTTCCTGAGCAAGCACCGGGCCGACCGCGTCAAGC
GCCTGGGAGACTTTCTGAACATGGAGAGCTTCGACCTTGTTCTGCTGGAGGAGGTGTGGA
GTGAGCAGGATTTCCAGTACCTGAGGCAGAAGCTGTTGCCCACCTACCCAGCTGCACACT
ACTTCAGGAGTGGCATCATTGGCAGTGGTCTCTGTGTCTTCTCCAAACACCCAATCCAGG
AATTCACCCAGCACGTCTTCACCCTCAATGGCTATCCTTACATGGTCCACCATGGTGACT
GGTTCTGTGGGAAAGCTGTGGGGCTGCTGGTGCTCCATCTAAGTGGATTGGTGCTCAATG
CCTACGTGACCCATCTCCATGCCGAGTACAGTCGACAGAAGGACATCTACTTAGCACATC
GTGTGGCCCAAGCTTGGGAACTGGCCCAGTTCATCCACCACACATCCAAGAAAGCTGATG
TGGTTCTATTATGTGGGGACCTCAACTTGCACCCAAAAGACCTGGGCTGCCGCCTGCTGA
AGGAATGGACGGGGCTGCATGATGCCTTTCTTGAGACCCGGGACTTCAAGGGCTCTGAAG
AAGGTTGTACGATGGTGCCTGAGAACTGCTACGTCAACCAGCGGGAGCTGGAGCAATTCC
CCGTGGGCATCCGCATCGACTATGTGCTTTATAAGGCGGTATCTGGGCTATACATCTCCT
GTAAGACTTTGAAAACTACTACAGGCAGTGATCCTCACAGTGGCACCCCCCTCTCTGATC
ATGAGGCCCTGATGGCTACTCTGTGTGTGAGACACAGCCCCCCCCAGCACAACCCCAGCC
CTACCCATGGACCAGCAGAGAGGTCACCACTGATTAATGTGCTGAGAGAGGCCTGGACAG
AGGTGGACCAGGGCCTGGCTCAGGCTCGCTGGTGGGCCACCATCGCTGGCTATGTGATTG
GTCTGGGGCTGATTCTCCTGGTGTTGCTGTGTGCCCTGGCTGCTGGAGGAGGGATCAAGG
AAATTGCCATACTGCTCTGGACCCCCAATGTAGGACTGGTGCTGGGGGCAGGAGCATTCT
ACCTCTTCCACATGCAGGAGGCCAAGAGTTTGTGTAGGGTCCGGGCCGAGCTCCAGCATG
TGCTGGGAAGGGCAAGGGAGACCCAGGACCTGAGTCCAGAGTCCGAGCAAGCCTTGCTCC
TGGGGCAGCAGGAGGGGGACAGAGCTGAGGAACAATAAAGCCTGATGCCTCTGTGAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5TEC9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5TEC9_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1168-1375, + strand, RNAz p=0.98043

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1168-1375, + strand, RNAz p=0.98043

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003080, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003080, +

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               136-239, gnl|bosTau2|chr9 (23071702-23071805)
               

               
               136-239, gnl|canFam2|chr12 (69384467-69384594)
               

               
               136-239, gnl|dasNov1|scaffold_5894 (11772-11676)
               

               
               136-239, gnl|echTel1|scaffold_316765 (41238-41364)
               

               
               136-239, gnl|fr1|chrUn (254644027-254644157)
               

               
               136-239, gnl|galGal2|chrUn (16690570-16690689)
               

               
               136-239, gnl|hg17|chr6 (109869226-109869356)
               

               
               136-239, gnl|Hg17|chr6 (109869252-109869368)
               

               
               136-239, gnl|loxAfr1|scaffold_12646 (24031-24157)
               

               
               136-239, gnl|mm7|chr10 (41300255-41300120)
               

               
               136-239, gnl|Mm7|chr10 (41300222-41300119)
               

               
               136-239, gnl|monDom2|scaffold_0 (110792240-110792110)
               

               
               136-239, gnl|oryCun1|scaffold_204508 (43473-43355)
               

               
               136-239, gnl|panTro1|chr5 (112183381-112183511)
               

               
               136-239, gnl|rheMac2|chr4 (154468026-154467896)
               

               
               136-239, gnl|rn3|chr20 (45474217-45474075)
               


               
               569-711, gnl|bosTau2|chr9 (23073060-23073202)
               

               
               569-711, gnl|Hg17|chr6 (109870638-109870781)
               

               
               569-711, gnl|Mm7|chr10 (41298982-41298837)
               


               
               969-1375, gnl|bosTau2|chr9 (23073825-23074231)
               

               
               969-1375, gnl|Hg17|chr6 (109871412-109871818)
               

               
               969-1375, gnl|Mm7|chr10 (41298244-41297830)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-239, gnl|bosTau2|chr9 (23071702-23071805)
               

               
               136-239, gnl|canFam2|chr12 (69384467-69384594)
               

               
               136-239, gnl|dasNov1|scaffold_5894 (11772-11676)
               

               
               136-239, gnl|echTel1|scaffold_316765 (41238-41364)
               

               
               136-239, gnl|fr1|chrUn (254644027-254644157)
               

               
               136-239, gnl|galGal2|chrUn (16690570-16690689)
               

               
               136-239, gnl|hg17|chr6 (109869226-109869356)
               

               
               136-239, gnl|Hg17|chr6 (109869252-109869368)
               

               
               136-239, gnl|loxAfr1|scaffold_12646 (24031-24157)
               

               
               136-239, gnl|mm7|chr10 (41300255-41300120)
               

               
               136-239, gnl|Mm7|chr10 (41300222-41300119)
               

               
               136-239, gnl|monDom2|scaffold_0 (110792240-110792110)
               

               
               136-239, gnl|oryCun1|scaffold_204508 (43473-43355)
               

               
               136-239, gnl|panTro1|chr5 (112183381-112183511)
               

               
               136-239, gnl|rheMac2|chr4 (154468026-154467896)
               

               
               136-239, gnl|rn3|chr20 (45474217-45474075)
               


               
               569-711, gnl|bosTau2|chr9 (23073060-23073202)
               

               
               569-711, gnl|Hg17|chr6 (109870638-109870781)
               

               
               569-711, gnl|Mm7|chr10 (41298982-41298837)
               


               
               969-1375, gnl|bosTau2|chr9 (23073825-23074231)
               

               
               969-1375, gnl|Hg17|chr6 (109871412-109871818)
               

               
               969-1375, gnl|Mm7|chr10 (41298244-41297830)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fty (0.351679)
               

               
               clu (0.239292)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               clu (0.239292)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	136-239, gnl\|bosTau2\|chr9 (23071702-23071805)
	136-239, gnl\|canFam2\|chr12 (69384467-69384594)
	136-239, gnl\|dasNov1\|scaffold_5894 (11772-11676)
	136-239, gnl\|echTel1\|scaffold_316765 (41238-41364)
	136-239, gnl\|fr1\|chrUn (254644027-254644157)
	136-239, gnl\|galGal2\|chrUn (16690570-16690689)
	136-239, gnl\|hg17\|chr6 (109869226-109869356)
	136-239, gnl\|Hg17\|chr6 (109869252-109869368)
	136-239, gnl\|loxAfr1\|scaffold_12646 (24031-24157)
	136-239, gnl\|mm7\|chr10 (41300255-41300120)
	136-239, gnl\|Mm7\|chr10 (41300222-41300119)
	136-239, gnl\|monDom2\|scaffold_0 (110792240-110792110)
	136-239, gnl\|oryCun1\|scaffold_204508 (43473-43355)
	136-239, gnl\|panTro1\|chr5 (112183381-112183511)
	136-239, gnl\|rheMac2\|chr4 (154468026-154467896)
	136-239, gnl\|rn3\|chr20 (45474217-45474075)

	569-711, gnl\|bosTau2\|chr9 (23073060-23073202)
	569-711, gnl\|Hg17\|chr6 (109870638-109870781)
	569-711, gnl\|Mm7\|chr10 (41298982-41298837)

	969-1375, gnl\|bosTau2\|chr9 (23073825-23074231)
	969-1375, gnl\|Hg17\|chr6 (109871412-109871818)
	969-1375, gnl\|Mm7\|chr10 (41298244-41297830)

	fty (0.351679)
	clu (0.239292)
	mcp (0.170648)
	cli (0.152812)
	ova (0.129132)
	cly (0.120642)
	nbm (0.0993246)
	jej (0.0989218)