Ss1.1-Pig4-TMW8048I17.3
|
AATGGCGGACGGGAAGGCGGGAGAGGAGAAGCCTGAGAAGCCGCAGCGAGCTGGAGCCGC
CGGAGGACCTGAAGAAGAAGCAGAAAAACCTGTGAAAACTAAGACTGTTTCTTCCAGTAA
TGGAGGGGAAAGTTCCAGTCGCAGCGCTGAGAAACGATCAGCTGAAGAAGAAGCTGCAGA
CCTCCCAACAAAGCCTACAAAGATCTCCAAGTTTGGATTTGCCATAGGTAGTCAGACGAC
AAAGAAAGCTTCAGCCATATCCATCAAACTTGGCTCAACTAAGCCTAAAGAAACTGTTCC
AACTCTTGCTCCAAAAACCCTTTCAGTAGCAGCAGCTTTTAATGAAGATGAAGATAGTGA
ACCAGAGGAAATGCCTCCAGAAGCAAAGATGAGGATGAAGAATATTGGAAGGGATACACC
AACATCAGCAGGACCAAATTCCTTCAATAAAGGAAAACATGGGTTTTCTGATAACCAGAA
GCTATGGGAACGAAATATAAAATCTCATCTTGGAAATGTCCATGACCAAGACAATTAAAT
GATGTGTTTTGAAATTGGGGTGTGGGGTGGGTGTAAAGTTAAAAGGAACAGTTTCCTTTT
TTAAAGAATGGTATAAGACTATCTTTGGAGCCGCCTTTTTTTTTTTTTTTTTTTTTTTAA
GATTGAATGGTACACTAATAAATGAGAATTTAAAATTAGAGGTAATTTATGTTTTATATG
CAGATTTCAAGACATTTACTAATTTTGTAGTTTCATGTGATTAGTTTCCAAAGGTTACAG
ATAATAAAAAATCAGAAATGGTACCTTTCTAAGAATTGCATATTTTTTTAGACACAACTA
TTAGCACATTAAGAGGGAAGCAAAAAGTTATTGTCTATTGAAACTATAGTTAATTAGTTT
CTAACTTAACTCCCTTATTAGCCTAAACTGTCTGGCTCCCAGGAACAGCCTTATAAAGAA
GGGAGTGTTACATTGGGAGGAAAATGTTACTGGACTATTGACTGAGAAAGTAAATTAGTT
AAAATTAAAATACGGCTTTTTTTCCTAATGGGCATTTGTTTTGTTTCGAGTCATCATAAA
CTAGTTATTGCATTGCTATCAGTGGATAACAGATGCTTAGCTCTTTAAAAAGAATATTTT
AAAATTTTATGTAAACTGTTGAGTATTTAAGATAGCCCACTTAATTTTAAAGGGTCTTGT
CTACCTTCATTAGTTTTCAAAGAACAACCATTTGCTACCAAAGTAAATCAGTATTTTGAA
TGTGCTTCTCTTGGTTTTGTCATTAGCTAGTTCCTGTAAGCATTTCCATCAGATCTTGAG
GCAAATCATAAGGAAGCTGTTTCTTTTAAAATAGCAAACCACCACCAAAAATTTAAATGT
ACATAGTTAAATATTTGGCTGTTCTTATTTTTTAAAGGGTATAAACACCAAAAAAAAAAA
AAAAAAGGGTAAGGTTGTATGAAGATGGAAAATGAGAAAGACGCACTTTCTGTAACTCTA
TCAAAGCATTTAAGTTACTAACTTGTGAAATCCAATTTGATTCGAACTTATTATAGGAAT
CCTTCTTTAGCACAATAATATGGTTTATTTTAACTGTATACATATTAACCAGTGGCCTCT
CAAAAGCACATTTTAGATACTGAAAATAGAAGGAAAGAAAATGCATCTTTAAACATATTT
TATGGAATCTTTGACCACATATACTTTGTTAAGCTATGTGTTGTAGGATTTGTGTTTACT
TTGTATTTTTGTATTGTATATGAATTCTTTTTTAATGTGACAGTTAAACACATCTTTAAA
AGCATAGTCACACATAAAAGAAACATATAGTATAATGATATCCTTGAAAACTCCTACAGT
GTTAAATTTGGAGGCAGCTTCAGACTACTTGATTGGTGGTAATTACTCACTGAGCTCTTT
TAATAGGTAATAGCTCTAGAGAAGCAGCCTGTATATATCCCTAATACTTTGTTCACTTGC
AGTTGAGTTTAGAGTAAGCCCCAAGTAAAACAATGGAAATGTATATAGAACTATTAGTTC
TTACTTACATGATTTAACTATATCAAGATAAATGAATTTAACTTGCTTTAATGTAGGCAA
ACTTGCCGTTTTTGTTCATTTTAATGTTTATGTTCAAATAACATCCCTCTCCTACATTTT
CTTTTCTTGACTCAAATATTAACCTAAGGTCAAGATAGGAGAGAGAAACGACTGAGATGA
ATGTCTTTACTAAAATACCAATAAATTTGTCAAACTCAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AATGGCGGACGGGAAGGCGGGAGAGGAGAAGCCTGAGAAGCCGCAGCGAGCTGGAGCCGC
CGGAGGACCTGAAGAAGAAGCAGAAAAACCTGTGAAAACTAAGACTGTTTCTTCCAGTAA
TGGAGGGGAAAGTTCCAGTCGCAGCGCTGAGAAACGATCAGCTGAAGAAGAAGCTGCAGA
CCTCCCAACAAAGCCTACAAAGATCTCCAAGTTTGGATTTGCCATAGGTAGTCAGACGAC
AAAGAAAGCTTCAGCCATATCCATCAAACTTGGCTCAACTAAGCCTAAAGAAACTGTTCC
AACTCTTGCTCCAAAAACCCTTTCAGTAGCAGCAGCTTTTAATGAAGATGAAGATAGTGA
ACCAGAGGAAATGCCTCCAGAAGCAAAGATGAGGATGAAGAATATTGGAAGGGATACACC
AACATCAGCAGGACCAAATTCCTTCAATAAAGGAAAACATGGGTTTTCTGATAACCAGAA
GCTATGGGAACGAAATATAAAATCTCATCTTGGAAATGTCCATGACCAAGACAATTAAAT
GATGTGTTTTGAAATTGGGGTGTGGGGTGGGTGTAAAGTTAAAAGGAACAGTTTCCTTTT
TTAAAGAATGGTATAAGACTATCTTTGGAGCCGCCTTTTTTTTTTTTTTTTTTTTTTTAA
GATTGAATGGTACACTAATAAATGAGAATTTAAAATTAGAGGTAATTTATGTTTTATATG
CAGATTTCAAGACATTTACTAATTTTGTAGTTTCATGTGATTAGTTTCCAAAGGTTACAG
ATAATAAAAAATCAGAAATGGTACCTTTCTAAGAATTGCATATTTTTTTAGACACAACTA
TTAGCACATTAAGAGGGAAGCAAAAAGTTATTGTCTATTGAAACTATAGTTAATTAGTTT
CTAACTTAACTCCCTTATTAGCCTAAACTGTCTGGCTCCCAGGAACAGCCTTATAAAGAA
GGGAGTGTTACATTGGGAGGAAAATGTTACTGGACTATTGACTGAGAAAGTAAATTAGTT
AAAATTAAAATACGGCTTTTTTTCCTAATGGGCATTTGTTTTGTTTCGAGTCATCATAAA
CTAGTTATTGCATTGCTATCAGTGGATAACAGATGCTTAGCTCTTTAAAAAGAATATTTT
AAAATTTTATGTAAACTGTTGAGTATTTAAGATAGCCCACTTAATTTTAAAGGGTCTTGT
CTACCTTCATTAGTTTTCAAAGAACAACCATTTGCTACCAAAGTAAATCAGTATTTTGAA
TGTGCTTCTCTTGGTTTTGTCATTAGCTAGTTCCTGTAAGCATTTCCATCAGATCTTGAG
GCAAATCATAAGGAAGCTGTTTCTTTTAAAATAGCAAACCACCACCAAAAATTTAAATGT
ACATAGTTAAATATTTGGCTGTTCTTATTTTTTAAAGGGTATAAACACCAAAAAAAAAAA
AAAAAAGGGTAAGGTTGTATGAAGATGGAAAATGAGAAAGACGCACTTTCTGTAACTCTA
TCAAAGCATTTAAGTTACTAACTTGTGAAATCCAATTTGATTCGAACTTATTATAGGAAT
CCTTCTTTAGCACAATAATATGGTTTATTTTAACTGTATACATATTAACCAGTGGCCTCT
CAAAAGCACATTTTAGATACTGAAAATAGAAGGAAAGAAAATGCATCTTTAAACATATTT
TATGGAATCTTTGACCACATATACTTTGTTAAGCTATGTGTTGTAGGATTTGTGTTTACT
TTGTATTTTTGTATTGTATATGAATTCTTTTTTAATGTGACAGTTAAACACATCTTTAAA
AGCATAGTCACACATAAAAGAAACATATAGTATAATGATATCCTTGAAAACTCCTACAGT
GTTAAATTTGGAGGCAGCTTCAGACTACTTGATTGGTGGTAATTACTCACTGAGCTCTTT
TAATAGGTAATAGCTCTAGAGAAGCAGCCTGTATATATCCCTAATACTTTGTTCACTTGC
AGTTGAGTTTAGAGTAAGCCCCAAGTAAAACAATGGAAATGTATATAGAACTATTAGTTC
TTACTTACATGATTTAACTATATCAAGATAAATGAATTTAACTTGCTTTAATGTAGGCAA
ACTTGCCGTTTTTGTTCATTTTAATGTTTATGTTCAAATAACATCCCTCTCCTACATTTT
CTTTTCTTGACTCAAATATTAACCTAAGGTCAAGATAGGAGAGAGAAACGACTGAGATGA
ATGTCTTTACTAAAATACCAATAAATTTGTCAAACTCAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
64-278, gnl|bosTau2|chr11 (21763740-21763526) |
|
64-278, gnl|canFam2|chr33 (10981651-10981954) |
|
64-278, gnl|danRer3|chr1 (4381163-4380899) |
|
64-278, gnl|dasNov1|scaffold_54034 (10270-10571) |
|
64-278, gnl|echTel1|scaffold_211499 (14472-14770) |
|
64-278, gnl|fr1|chrUn (130303067-130302763) |
|
64-278, gnl|galGal2|chr1 (79404406-79404708) |
|
64-278, gnl|hg17|chr3 (102781292-102781593) |
|
64-278, gnl|Hg17|chr3 (102781322-102781536) |
|
64-278, gnl|loxAfr1|scaffold_1903 (38330-38028) |
|
64-278, gnl|mm7|chr16 (55879548-55879264) |
|
64-278, gnl|Mm7|chr16 (55879516-55879302) |
|
64-278, gnl|monDom2|scaffold_50 (8787941-8787634) |
|
64-278, gnl|oryCun1|scaffold_117846 (12231-12536) |
|
64-278, gnl|panTro1|chr2 (104280368-104280669) |
|
64-278, gnl|rheMac2|chr2 (21782622-21782923) |
|
64-278, gnl|rn3|chr11 (45631101-45631396) |
|
64-278, gnl|tetNig1|chr5 (9467446-9467762) |
|
64-278, gnl|xenTro1|scaffold_227 (1639912-1639618) |
| |
|
410-2257, gnl|bosTau2|chr11 (21755837-21753987) |
|
410-2257, gnl|Hg17|chr3 (102794159-102795969) |
|
410-2257, gnl|Mm7|chr16 (55872385-55870575) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
64-278, gnl|bosTau2|chr11 (21763740-21763526) |
|
64-278, gnl|canFam2|chr33 (10981651-10981954) |
|
64-278, gnl|danRer3|chr1 (4381163-4380899) |
|
64-278, gnl|dasNov1|scaffold_54034 (10270-10571) |
|
64-278, gnl|echTel1|scaffold_211499 (14472-14770) |
|
64-278, gnl|fr1|chrUn (130303067-130302763) |
|
64-278, gnl|galGal2|chr1 (79404406-79404708) |
|
64-278, gnl|hg17|chr3 (102781292-102781593) |
|
64-278, gnl|Hg17|chr3 (102781322-102781536) |
|
64-278, gnl|loxAfr1|scaffold_1903 (38330-38028) |
|
64-278, gnl|mm7|chr16 (55879548-55879264) |
|
64-278, gnl|Mm7|chr16 (55879516-55879302) |
|
64-278, gnl|monDom2|scaffold_50 (8787941-8787634) |
|
64-278, gnl|oryCun1|scaffold_117846 (12231-12536) |
|
64-278, gnl|panTro1|chr2 (104280368-104280669) |
|
64-278, gnl|rheMac2|chr2 (21782622-21782923) |
|
64-278, gnl|rn3|chr11 (45631101-45631396) |
|
64-278, gnl|tetNig1|chr5 (9467446-9467762) |
|
64-278, gnl|xenTro1|scaffold_227 (1639912-1639618) |
| |
|
410-2257, gnl|bosTau2|chr11 (21755837-21753987) |
|
410-2257, gnl|Hg17|chr3 (102794159-102795969) |
|
410-2257, gnl|Mm7|chr16 (55872385-55870575) |
|
ret (0.7724) |
|
cbl (0.688784) |
|
kid (0.648677) |
|
tra (0.61546) |
|
ece (0.45861) |
|
lyg (0.399308) |
|
fcc (0.39557) |
|
elu (0.385356) |
|
nlu (0.383362) |
|
gul (0.355177) |
|
fbs (0.350693) |
|
sin (0.349895) |
|
fco (0.314416) |
|
tbr (0.308356) |
|
sme (0.305437) |
|
bfe (0.299715) |
|
liv (0.292569) |
|
spl (0.286369) |
|
che (0.272628) |
|
bla (0.248694) |
|
ecc (0.23007) |
|
hea (0.204499) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
sag (0.182715) |
|
fty (0.17584) |
|
rec (0.17307) |
|
mga (0.160205) |
|
eli (0.151814) |
|
ski (0.146735) |
|
lin (0.145603) |
|
nca (0.136874) |
|
ste (0.135208) |
|
eje (0.0988338) |
|
ret (0.7724) |
|
cbl (0.688784) |
|
kid (0.648677) |
|
tra (0.61546) |
|
ece (0.45861) |
|
lyg (0.399308) |
|
fcc (0.39557) |
|
elu (0.385356) |
|
nlu (0.383362) |
|
gul (0.355177) |
|
fbs (0.350693) |
|
sin (0.349895) |
|
fco (0.314416) |
|
tbr (0.308356) |
|
sme (0.305437) |
|
bfe (0.299715) |
|
liv (0.292569) |
|
spl (0.286369) |
|
che (0.272628) |
|
bla (0.248694) |
|
ecc (0.23007) |
|
hea (0.204499) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
sag (0.182715) |
|
fty (0.17584) |
|
rec (0.17307) |
|
mga (0.160205) |
|
eli (0.151814) |
|
ski (0.146735) |
|
lin (0.145603) |
|
nca (0.136874) |
|
ste (0.135208) |
|
eje (0.0988338) |
