Non-Coding RNA Search

Ss1.1-Pig4-TMW8048J05.5

Sequence:


               
               ATACCTAATGCATAGCAGGACCAGAATCTGTAAACTGCTTTGCATTCATTCTTTGGAAAT
GGCTTGTGTTTGTGCTCCTGATATTGCTAGTTTAGATGGCTGTTAAGAAAGCCACATTTA
TAATACATATAAATAACATTCATAAGAGGTTTTTATTGGGCAAGGTATAGGTAGAACAGA
AGTAAAGGTGGGGAGGTTAGAAAACAGCCCCCAAAGGGAGAGAGGCAAGATGTCTTGTGT
ATATACGTGATAATTCTGTAGCCATGGTTCTCACAGTTAACTCTTGTCATAATTTTCTGT
CCCAGAGAATTCATGTTTTCACAATTTATATTGATTGTATACTGACTAACATTAAGAGTA
ATAAGAAATAACATTTTTGTTTACTTAGATGATGTGTTGGCTAATTCAAGACTCTCCAAG
AGAAGCTTCAGTGCCGATGGATATGAGACACAACAAAACCAAGTAAAAGATTCAAAAGCA
ATGTTTCAAACCTACAAAAAGATGTACATGGAGAAGAGGAGCAGAAGTCTTGGTAGCAGT
CCTTTAGAATAATTTTGAGACTTAATTCTTCTCATGGTCTGTAATTGCCATCAGAAGATT
TCACTTTCTGTTCAGAATATTTTTCTGGAAATACTAAGTGTGCCATGATAACATTTCTCA
GTTTGGTTACCACTTAGGTTATGTGTATCTTTGAAATTACTAACTAAATTGGCTAGAGAG
CCTTATTTGTGAGTTGCAAACATAAGAAATAGGTGATATTTGTCAGGGGAACTGTAAGGT
ATTGAATTCTGACATTATTGAACCAAGTTTACCATTATTTTAAAAGGAATTTTTATACTA
ATCTTGTTTTGAAATACTAACAATTCATCCTAAGGGAGACCTATTCCTTAAGGACTTATT
TCCACTGGGACTGTATATTTTTGTTTCTAAAACTTAGTAGCAAAACATATTTTTCAGAAA
TGCTCACTGTGAACATAAAAGTATATTCTTAAGTATTTTATACTGAATTGTAAACTTTTT
GTCAGAAGTCTTGTTTTATACTTGTTGAACTGCACACAATTTTTGGATAATGTCAACATT
ACTTTTCATACTTGAAATAAACATTTATTTTTTAAAAAATAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACCTAATGCATAGCAGGACCAGAATCTGTAAACTGCTTTGCATTCATTCTTTGGAAAT
GGCTTGTGTTTGTGCTCCTGATATTGCTAGTTTAGATGGCTGTTAAGAAAGCCACATTTA
TAATACATATAAATAACATTCATAAGAGGTTTTTATTGGGCAAGGTATAGGTAGAACAGA
AGTAAAGGTGGGGAGGTTAGAAAACAGCCCCCAAAGGGAGAGAGGCAAGATGTCTTGTGT
ATATACGTGATAATTCTGTAGCCATGGTTCTCACAGTTAACTCTTGTCATAATTTTCTGT
CCCAGAGAATTCATGTTTTCACAATTTATATTGATTGTATACTGACTAACATTAAGAGTA
ATAAGAAATAACATTTTTGTTTACTTAGATGATGTGTTGGCTAATTCAAGACTCTCCAAG
AGAAGCTTCAGTGCCGATGGATATGAGACACAACAAAACCAAGTAAAAGATTCAAAAGCA
ATGTTTCAAACCTACAAAAAGATGTACATGGAGAAGAGGAGCAGAAGTCTTGGTAGCAGT
CCTTTAGAATAATTTTGAGACTTAATTCTTCTCATGGTCTGTAATTGCCATCAGAAGATT
TCACTTTCTGTTCAGAATATTTTTCTGGAAATACTAAGTGTGCCATGATAACATTTCTCA
GTTTGGTTACCACTTAGGTTATGTGTATCTTTGAAATTACTAACTAAATTGGCTAGAGAG
CCTTATTTGTGAGTTGCAAACATAAGAAATAGGTGATATTTGTCAGGGGAACTGTAAGGT
ATTGAATTCTGACATTATTGAACCAAGTTTACCATTATTTTAAAAGGAATTTTTATACTA
ATCTTGTTTTGAAATACTAACAATTCATCCTAAGGGAGACCTATTCCTTAAGGACTTATT
TCCACTGGGACTGTATATTTTTGTTTCTAAAACTTAGTAGCAAAACATATTTTTCAGAAA
TGCTCACTGTGAACATAAAAGTATATTCTTAAGTATTTTATACTGAATTGTAAACTTTTT
GTCAGAAGTCTTGTTTTATACTTGTTGAACTGCACACAATTTTTGGATAATGTCAACATT
ACTTTTCATACTTGAAATAAACATTTATTTTTTAAAAAATAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               861-967, + strand, RNAz p=0.708187

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               861-967, + strand, RNAz p=0.708187

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_018169, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_018169, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1121, gnl|bosTau2|chr5 (47908711-47907605)
               

               
               1-1121, gnl|Hg17|chr12 (32036155-32037306)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1121, gnl|bosTau2|chr5 (47908711-47907605)
               

               
               1-1121, gnl|Hg17|chr12 (32036155-32037306)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               liv (0.438853)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.438853)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	1-1121, gnl\|bosTau2\|chr5 (47908711-47907605)
	1-1121, gnl\|Hg17\|chr12 (32036155-32037306)

	liv (0.438853)
	mga (0.160205)
	lin (0.145603)
	lnt (0.142308)
	kid (0.129735)
	ova (0.129132)
	spc (0.113366)
	eje (0.0988338)