Ss1.1-Pig4-TMW8048J22.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGGGCTCTAGACCTCCTCGTCCTCGCCTGCGACAGCAACAGGCAGGAAGTCGGCGGGCT GCGCGTCTCATCTTCAGCCTTGCCCAAGAATCTCTCAAAGCCGGTGCCCGCCAGAGCGCC GCCCCAGAGCCCACGGGTGGGCCCGGCAGTCTCTGGGGCGCATGGGGCGGCGCTAATCGG GCTGGCGGCGCAGGCCAGGGCCCGCTCCAATATGAACCTCGTGGGCAGCTACGCACACCA TCACCACCATCACCACCATCACCATCCGCACCCCGCGCACCCCATGCTCCACGAGCCCTT CCTCTTTGGTCCTGCCTCGCGCTGTCACCAGGAGCGGCCCTACTTCCAGAGCTGGCTGCT GAGCCCCGCAGACTCTGCCCCGGACTTCCCCGCTGGAGGGCCACCTCCCACAGCCGCAGC AGCCGCCGCCTCCTACGGTCCGGACGCGAGGCCCGGCCAGAGCCCCGGGCGGCTGGAGGC ACTTGGCGGCCGCCTGGGCCGGCGGAAAGGCTCAGGACCCAAGAAGGAGCGGAGGCGCAC AGAGAGCATTAACAGCGCGTTCGCCGAGCTGCGCGAGTGCATCCCCAATGTGCCGGCGGA CACCAAGCTCTCCAAGATCAAGACTCTGCGCCTGGCCACCAGCTACATCGCCTACCTGAT GGACGTGCTGGCCAAGGACGCACAGGCCGGCGACCCTGAGGCCTTCAAGGCCGAACTCAA GAAGGCGGACGGCGGCCGCGAGAGCAAGCGGAAAAGAGAGCTGCAGCAGCACGAAGGCTT TCCTCCTGCCCTGGGCCCGGGCGAGAAGAGGATTAAAGGGCGCACAGGCTGGCCGCAGCA AGTCTGGGCGCTGGAGTTAAACCAGTGAGCGGAGGCCCACGCCGAGGACCCCGCCACGGC TGCCCGACCCTGGAGTTCCGGGAAAAGAGGAAGGCTGTGGCGAGTGCCAGGCCCTGGGTG CCAGGGGCTTGTAGGGGAGCATACTGCCCAGCCTTGATTGCGAGCAGGCAGGTCACTGGC CGCAACTACACACTTGGATCACACGTGCAATGTCATTTGAAATTGTTTTTAATACATGAA GAGAAAGAGAAATATATATATAACCACCCCCACCCCCCACCCCACCCCACCCCACGGCAA CCGGCAACCGAGAGGGCGGCACTTGGCTGCACGATTGGAGAAGGAGAGACTGCAGGACCC AAACGTGCTAAGATGTACCCTTCCAACCCTTCTGGGGCGAATTTAGAACCCCTAACGCCT TCCCCACTACGCTCTCTGGCTCTCTTTCTCACTCTCTTCTCAGCTTCAAGTCAAAACCCT CTATGGGCTCTCCTTCCTAATTAAAATGCAATAAGAGGAATCAATAGTTTTCTGCCGGGG AAAGAGAACCAAACCAGGAAGACGGAGGGCTGCCTTTGTTGTTCTTCTCCCTCAGACGTG ATGTTTTTATTTTATTTTTGTCACTGCACTCCCTTCTTAGTTCCGAGGGAAATGTTCTTT CTTTACTTTTCTTTCCTTCCGTCTTTCGTTCTTTTTTCTTTCCTCTTTTTTCCTTTCTCG TTTCTTTCTTCCCCCCCTTTCCTTCCTTCCCTCCTTCCTTCCTAAATAAAAGCTTTTCCC TATGTTGAAAAGTTTTTATGGATTTAAACTACCTACCGTGCCTGCTGAGCTCAGGTGTTT GTTTATCCCCCATCCTCACCCTTTTTCTACCTCAAATCTGTATGACCAGTCACCGCCCCT TTCCTTTGCCAAAGCAGTGTCTATGCTTTTGACTAATAAAACATTTTCTGAAATCAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGGGCTCTAGACCTCCTCGTCCTCGCCTGCGACAGCAACAGGCAGGAAGTCGGCGGGCT GCGCGTCTCATCTTCAGCCTTGCCCAAGAATCTCTCAAAGCCGGTGCCCGCCAGAGCGCC GCCCCAGAGCCCACGGGTGGGCCCGGCAGTCTCTGGGGCGCATGGGGCGGCGCTAATCGG GCTGGCGGCGCAGGCCAGGGCCCGCTCCAATATGAACCTCGTGGGCAGCTACGCACACCA TCACCACCATCACCACCATCACCATCCGCACCCCGCGCACCCCATGCTCCACGAGCCCTT CCTCTTTGGTCCTGCCTCGCGCTGTCACCAGGAGCGGCCCTACTTCCAGAGCTGGCTGCT GAGCCCCGCAGACTCTGCCCCGGACTTCCCCGCTGGAGGGCCACCTCCCACAGCCGCAGC AGCCGCCGCCTCCTACGGTCCGGACGCGAGGCCCGGCCAGAGCCCCGGGCGGCTGGAGGC ACTTGGCGGCCGCCTGGGCCGGCGGAAAGGCTCAGGACCCAAGAAGGAGCGGAGGCGCAC AGAGAGCATTAACAGCGCGTTCGCCGAGCTGCGCGAGTGCATCCCCAATGTGCCGGCGGA CACCAAGCTCTCCAAGATCAAGACTCTGCGCCTGGCCACCAGCTACATCGCCTACCTGAT GGACGTGCTGGCCAAGGACGCACAGGCCGGCGACCCTGAGGCCTTCAAGGCCGAACTCAA GAAGGCGGACGGCGGCCGCGAGAGCAAGCGGAAAAGAGAGCTGCAGCAGCACGAAGGCTT TCCTCCTGCCCTGGGCCCGGGCGAGAAGAGGATTAAAGGGCGCACAGGCTGGCCGCAGCA AGTCTGGGCGCTGGAGTTAAACCAGTGAGCGGAGGCCCACGCCGAGGACCCCGCCACGGC TGCCCGACCCTGGAGTTCCGGGAAAAGAGGAAGGCTGTGGCGAGTGCCAGGCCCTGGGTG CCAGGGGCTTGTAGGGGAGCATACTGCCCAGCCTTGATTGCGAGCAGGCAGGTCACTGGC CGCAACTACACACTTGGATCACACGTGCAATGTCATTTGAAATTGTTTTTAATACATGAA GAGAAAGAGAAATATATATATAACCACCCCCACCCCCCACCCCACCCCACCCCACGGCAA CCGGCAACCGAGAGGGCGGCACTTGGCTGCACGATTGGAGAAGGAGAGACTGCAGGACCC AAACGTGCTAAGATGTACCCTTCCAACCCTTCTGGGGCGAATTTAGAACCCCTAACGCCT TCCCCACTACGCTCTCTGGCTCTCTTTCTCACTCTCTTCTCAGCTTCAAGTCAAAACCCT CTATGGGCTCTCCTTCCTAATTAAAATGCAATAAGAGGAATCAATAGTTTTCTGCCGGGG AAAGAGAACCAAACCAGGAAGACGGAGGGCTGCCTTTGTTGTTCTTCTCCCTCAGACGTG ATGTTTTTATTTTATTTTTGTCACTGCACTCCCTTCTTAGTTCCGAGGGAAATGTTCTTT CTTTACTTTTCTTTCCTTCCGTCTTTCGTTCTTTTTTCTTTCCTCTTTTTTCCTTTCTCG TTTCTTTCTTCCCCCCCTTTCCTTCCTTCCCTCCTTCCTTCCTAAATAAAAGCTTTTCCC TATGTTGAAAAGTTTTTATGGATTTAAACTACCTACCGTGCCTGCTGAGCTCAGGTGTTT GTTTATCCCCCATCCTCACCCTTTTTCTACCTCAAATCTGTATGACCAGTCACCGCCCCT TTCCTTTGCCAAAGCAGTGTCTATGCTTTTGACTAATAAAACATTTTCTGAAATCAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 114-1688, - strand, RNAz p=0.990662 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 114-1688, - strand, RNAz p=0.990662 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 3-763, gnl|bosTau2|chr7 (44431684-44430924) | |
| 3-763, gnl|Hg17|chr5 (153837966-153837219) | |
| 3-763, gnl|Mm7|chr11 (57913542-57912789) | |
| 519-671, gnl|bosTau2|chr3 (4690191-4690039) | |
| 519-671, gnl|canFam2|chr38 (24867524-24867336) | |
| 519-671, gnl|danRer3|chr3 (5576452-5576266) | |
| 519-671, gnl|dasNov1|scaffold_78571 (2567-2386) | |
| 519-671, gnl|echTel1|scaffold_91447 (875-686) | |
| 519-671, gnl|fr1|chrUn (189167075-189167261) | |
| 519-671, gnl|galGal2|chrUn (8010054-8009865) | |
| 519-671, gnl|hg17|chr1 (157153812-157154001) | |
| 519-671, gnl|Hg17|chr1 (157153836-157153988) | |
| 519-671, gnl|loxAfr1|scaffold_9646 (13278-13089) | |
| 519-671, gnl|mm7|chr1 (172024255-172024066) | |
| 519-671, gnl|Mm7|chr1 (172024229-172024077) | |
| 519-671, gnl|monDom2|scaffold_13 (61111963-61111774) | |
| 519-671, gnl|oryCun1|scaffold_206746 (35501-35320) | |
| 519-671, gnl|panTro1|chr1 (139234154-139234343) | |
| 519-671, gnl|rheMac2|chr1 (138989673-138989862) | |
| 519-671, gnl|rn3|chr13 (88238029-88237840) | |
| 519-671, gnl|tetNig1|chr3 (3639695-3639880) | |
| 519-671, gnl|xenTro1|scaffold_96 (2072506-2072695) | |
| 526-670, gnl|bosTau2|chr14 (50697-50553) | |
| 526-670, gnl|canFam2|chr13 (40733994-40734161) | |
| 526-670, gnl|danRer3|chr19 (65476165-65476338) | |
| 526-670, gnl|dasNov1|scaffold_65874 (8123-8290) | |
| 526-670, gnl|echTel1|scaffold_298013 (22495-22313) | |
| 526-670, gnl|fr1|chrUn (88937961-88937804) | |
| 526-670, gnl|galGal2|chr7 (32168988-32168834) | |
| 526-670, gnl|hg17|chr8 (145393716-145393883) | |
| 526-670, gnl|Hg17|chr8 (145461659-145461803) | |
| 526-670, gnl|loxAfr1|scaffold_7163 (83779-83617) | |
| 526-670, gnl|mm7|chr15 (76540375-76540542) | |
| 526-670, gnl|Mm7|chr15 (76540412-76540556) | |
| 526-670, gnl|monDom2|scaffold_38 (2707095-2706933) | |
| 526-670, gnl|oryCun1|scaffold_141369 (20574-20735) | |
| 526-670, gnl|rheMac2|chr10 (33876400-33876238) | |
| 526-670, gnl|rn3|chr7 (114539316-114539483) | |
| 526-670, gnl|tetNig1|chr3 (362216-362059) | |
| 526-670, gnl|xenTro1|scaffold_1404 (115891-116054) | |
| 1537-1796, gnl|bosTau2|chr7 (44428643-44428382) | |
| 1537-1796, gnl|Hg17|chr5 (153834978-153834725) | |
| 1537-1796, gnl|Mm7|chr11 (57910556-57910254) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-763, gnl|bosTau2|chr7 (44431684-44430924) | |
| 3-763, gnl|Hg17|chr5 (153837966-153837219) | |
| 3-763, gnl|Mm7|chr11 (57913542-57912789) | |
| 519-671, gnl|bosTau2|chr3 (4690191-4690039) | |
| 519-671, gnl|canFam2|chr38 (24867524-24867336) | |
| 519-671, gnl|danRer3|chr3 (5576452-5576266) | |
| 519-671, gnl|dasNov1|scaffold_78571 (2567-2386) | |
| 519-671, gnl|echTel1|scaffold_91447 (875-686) | |
| 519-671, gnl|fr1|chrUn (189167075-189167261) | |
| 519-671, gnl|galGal2|chrUn (8010054-8009865) | |
| 519-671, gnl|hg17|chr1 (157153812-157154001) | |
| 519-671, gnl|Hg17|chr1 (157153836-157153988) | |
| 519-671, gnl|loxAfr1|scaffold_9646 (13278-13089) | |
| 519-671, gnl|mm7|chr1 (172024255-172024066) | |
| 519-671, gnl|Mm7|chr1 (172024229-172024077) | |
| 519-671, gnl|monDom2|scaffold_13 (61111963-61111774) | |
| 519-671, gnl|oryCun1|scaffold_206746 (35501-35320) | |
| 519-671, gnl|panTro1|chr1 (139234154-139234343) | |
| 519-671, gnl|rheMac2|chr1 (138989673-138989862) | |
| 519-671, gnl|rn3|chr13 (88238029-88237840) | |
| 519-671, gnl|tetNig1|chr3 (3639695-3639880) | |
| 519-671, gnl|xenTro1|scaffold_96 (2072506-2072695) | |
| 526-670, gnl|bosTau2|chr14 (50697-50553) | |
| 526-670, gnl|canFam2|chr13 (40733994-40734161) | |
| 526-670, gnl|danRer3|chr19 (65476165-65476338) | |
| 526-670, gnl|dasNov1|scaffold_65874 (8123-8290) | |
| 526-670, gnl|echTel1|scaffold_298013 (22495-22313) | |
| 526-670, gnl|fr1|chrUn (88937961-88937804) | |
| 526-670, gnl|galGal2|chr7 (32168988-32168834) | |
| 526-670, gnl|hg17|chr8 (145393716-145393883) | |
| 526-670, gnl|Hg17|chr8 (145461659-145461803) | |
| 526-670, gnl|loxAfr1|scaffold_7163 (83779-83617) | |
| 526-670, gnl|mm7|chr15 (76540375-76540542) | |
| 526-670, gnl|Mm7|chr15 (76540412-76540556) | |
| 526-670, gnl|monDom2|scaffold_38 (2707095-2706933) | |
| 526-670, gnl|oryCun1|scaffold_141369 (20574-20735) | |
| 526-670, gnl|rheMac2|chr10 (33876400-33876238) | |
| 526-670, gnl|rn3|chr7 (114539316-114539483) | |
| 526-670, gnl|tetNig1|chr3 (362216-362059) | |
| 526-670, gnl|xenTro1|scaffold_1404 (115891-116054) | |
| 1537-1796, gnl|bosTau2|chr7 (44428643-44428382) | |
| 1537-1796, gnl|Hg17|chr5 (153834978-153834725) | |
| 1537-1796, gnl|Mm7|chr11 (57910556-57910254) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.802032) | |
| bla (0.248694) | |
| ute (0.132784) |