Non-Coding RNA Search

Ss1.1-Pig4-TMW8048K08.3

Sequence:


               
               CTAATTGATAATTATTCCTATAGAGGATTTTACCAAAAAACCCATATTTCATACCAGGAG
TATCCCTTCAAAGTGTTTCCCCCCTACTGCAGTGGGTTGGGTTATATAATGTCCAGAGAT
TTGGTGCCAAGGATCTATGAAATGATGAGTCACGTAAAACCCATCAAGTTCGAAGATGTC
TATGTTGGAATCTGTTTGAATTTATTAAAAGTGGACATTCATATTCCAGAAGACACAAAC
CTTTTCTTTTTATATAGGATCCATTTGGATGTCTGTCAACTCAGACGTGTGATTGCAGCC
CATGGCTTTTCTTCCAAGGAAATTATCACATTTTGGCAGGTTATGCTAAGGAACACCACA
TGCCATTATTAACTTGACGTTCTACCCAAAGCCTAGAGAAGGGAGGGATACTTTGTGAAA
GTGTTAAAGTTAGTACTGTGAAATCTCCAATGGAAAACTCATGGGAAGGTCACTGAGTCG
CTTACATGGAACTGAAACTCCTGAAGACCCCATAGACTGGAAGCAAGGACTTGCACTTGA
CTGGTGGTTTATTCTGACAGCGATCGAGTAAGGCCTTTTAAAGATGATGTTCAGAGGAAT
GAAACATAAAGGAATGGGAAGTTTTTGTTAATAAAACTAATAGGACCAAACTATTCGAAC
ATGTCATTCTGTAGGCTAGAATTTCTTAAAAGGGTTTCACTGAATTATAAGCTCATTTGT
CCATAACAACAAAGCAGTGTGGAGTATTACTCATTGAACAGTCTTGTCCGTTCAGGGTTT
TGTGTATATCATACCTGAATTAGCAGTTTTTTAAGATATATAGTTCTATGTAAAAAAAAA
AAAGTTGTACCAAACAAAAGTTCATCTGTTTTTGGTCATTCAGAAGATATTTCAAGCTGT
TACAGTATTTCAGAGTGCTCAATTATTATTTAATATGACTTAAACTTTTATACTTTTTTG
GGTGTTTGAATGTTCTGGTTGTTTCAATATTGTGTAAACAGAATAGTGAATCATTCTTTA
TATTTAAACTTCTTTCCAGTTACTTCACTGAAGAGTTTAATTATTGATAGCTCCATCAGT
GTGAAGACATTGGTCATTATTGTATATCAGTAATCTCTTAGACTTTGGTAAACATTTTGT
TGTGGTAATATAGAGAAGAATTAAAACACAAAGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAATTGATAATTATTCCTATAGAGGATTTTACCAAAAAACCCATATTTCATACCAGGAG
TATCCCTTCAAAGTGTTTCCCCCCTACTGCAGTGGGTTGGGTTATATAATGTCCAGAGAT
TTGGTGCCAAGGATCTATGAAATGATGAGTCACGTAAAACCCATCAAGTTCGAAGATGTC
TATGTTGGAATCTGTTTGAATTTATTAAAAGTGGACATTCATATTCCAGAAGACACAAAC
CTTTTCTTTTTATATAGGATCCATTTGGATGTCTGTCAACTCAGACGTGTGATTGCAGCC
CATGGCTTTTCTTCCAAGGAAATTATCACATTTTGGCAGGTTATGCTAAGGAACACCACA
TGCCATTATTAACTTGACGTTCTACCCAAAGCCTAGAGAAGGGAGGGATACTTTGTGAAA
GTGTTAAAGTTAGTACTGTGAAATCTCCAATGGAAAACTCATGGGAAGGTCACTGAGTCG
CTTACATGGAACTGAAACTCCTGAAGACCCCATAGACTGGAAGCAAGGACTTGCACTTGA
CTGGTGGTTTATTCTGACAGCGATCGAGTAAGGCCTTTTAAAGATGATGTTCAGAGGAAT
GAAACATAAAGGAATGGGAAGTTTTTGTTAATAAAACTAATAGGACCAAACTATTCGAAC
ATGTCATTCTGTAGGCTAGAATTTCTTAAAAGGGTTTCACTGAATTATAAGCTCATTTGT
CCATAACAACAAAGCAGTGTGGAGTATTACTCATTGAACAGTCTTGTCCGTTCAGGGTTT
TGTGTATATCATACCTGAATTAGCAGTTTTTTAAGATATATAGTTCTATGTAAAAAAAAA
AAAGTTGTACCAAACAAAAGTTCATCTGTTTTTGGTCATTCAGAAGATATTTCAAGCTGT
TACAGTATTTCAGAGTGCTCAATTATTATTTAATATGACTTAAACTTTTATACTTTTTTG
GGTGTTTGAATGTTCTGGTTGTTTCAATATTGTGTAAACAGAATAGTGAATCATTCTTTA
TATTTAAACTTCTTTCCAGTTACTTCACTGAAGAGTTTAATTATTGATAGCTCCATCAGT
GTGAAGACATTGGTCATTATTGTATATCAGTAATCTCTTAGACTTTGGTAAACATTTTGT
TGTGGTAATATAGAGAAGAATTAAAACACAAAGATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61871142|ref|XP_605709.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61871142|ref|XP_605709.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               122-241, + strand, RNAz p=0.868103

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-241, + strand, RNAz p=0.868103

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_033167, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_033167, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-744, gnl|bosTau2|chr1 (68934034-68933287)
               

               
               2-744, gnl|Hg17|chr3 (162286619-162285591)
               

               
               2-744, gnl|Mm7|chr3 (69676307-69675647)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-744, gnl|bosTau2|chr1 (68934034-68933287)
               

               
               2-744, gnl|Hg17|chr3 (162286619-162285591)
               

               
               2-744, gnl|Mm7|chr3 (69676307-69675647)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               pro (0.512033)
               

               
               ret (0.3862)
               

               
               clu (0.239292)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               ret (0.3862)
               

               
               clu (0.239292)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	2-744, gnl\|bosTau2\|chr1 (68934034-68933287)
	2-744, gnl\|Hg17\|chr3 (162286619-162285591)
	2-744, gnl\|Mm7\|chr3 (69676307-69675647)

	pro (0.512033)
	ret (0.3862)
	clu (0.239292)
	fco (0.157208)
	fat (0.147427)
	lnt (0.142308)
	kid (0.129735)
	sug (0.127291)
	spc (0.113366)