Non-Coding RNA Search

Ss1.1-Pig4-TMW8048K08.5

Sequence:


               
               CTGTCTGAGAATCTCTGTTTTTCAGTAGTTTGAGACCTTTGGCAGTATCTCTGCTTAATT
AAATTTCAACCATTTATTTGTGACTACTACATACTACTGAATGTTCAGTTGGTGAAATTG
AAGGTCTTTCACTCCGAAGAAATAAATCAAGAGGAAGAACCTGAGGCCCGTGCTCCTGAA
CTTCTGTGAATGGCCCCAGCGCTCCCGATCACTCTTCCGAGTAAGATGTCCCTGAGATCC
CTCAAGTGGAGCCTCCTGCTGCTGTCGCTGCTGAGTTTCCTAGTGATGTGGTACCTGAGC
CTCCCCCACTACAACGTGATCGAGCGCGTGAACTGGATGTACTTCTACGAGTATGAGCCC
ATTTACAGACAAGACTTTCACTTCACACTTCGAGAGCACTCAAACTGCTCTCATCAAAAC
CCGTTTCTTGTCATCCTGGTGACCTCACACCCCGCAGATGTGAAAGCCAGACAGGCCATT
AGAGTTACTTGGGGTGAAAAGAAGTCTTGGTGGGGATATGAAGTTCTGACGTTTTTCTTA
TTAGGACAGCAGGCTGAAAGGGAAGACAAAGTGTTAGCCTTATCCTTAGAGGATGAGCAC
CTTCTTTATGGTGACATAATACGGCAAGATTTTTTAGACACATACAATAACCTGACCTTG
AAAACGATTATGGCATTTAGGTGGGTAACTGAATTTTGCCCCAATGCCAGGTACATCATG
AAGACAGACACGGATGTTTTCATCAATACTGGCAATTTAGTGAAGTATCTTTTAAATTTA
AACCACTCAGAAAAGTTTTTCACAGGTTATCCTCTAATTGATAATTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCTGAGAATCTCTGTTTTTCAGTAGTTTGAGACCTTTGGCAGTATCTCTGCTTAATT
AAATTTCAACCATTTATTTGTGACTACTACATACTACTGAATGTTCAGTTGGTGAAATTG
AAGGTCTTTCACTCCGAAGAAATAAATCAAGAGGAAGAACCTGAGGCCCGTGCTCCTGAA
CTTCTGTGAATGGCCCCAGCGCTCCCGATCACTCTTCCGAGTAAGATGTCCCTGAGATCC
CTCAAGTGGAGCCTCCTGCTGCTGTCGCTGCTGAGTTTCCTAGTGATGTGGTACCTGAGC
CTCCCCCACTACAACGTGATCGAGCGCGTGAACTGGATGTACTTCTACGAGTATGAGCCC
ATTTACAGACAAGACTTTCACTTCACACTTCGAGAGCACTCAAACTGCTCTCATCAAAAC
CCGTTTCTTGTCATCCTGGTGACCTCACACCCCGCAGATGTGAAAGCCAGACAGGCCATT
AGAGTTACTTGGGGTGAAAAGAAGTCTTGGTGGGGATATGAAGTTCTGACGTTTTTCTTA
TTAGGACAGCAGGCTGAAAGGGAAGACAAAGTGTTAGCCTTATCCTTAGAGGATGAGCAC
CTTCTTTATGGTGACATAATACGGCAAGATTTTTTAGACACATACAATAACCTGACCTTG
AAAACGATTATGGCATTTAGGTGGGTAACTGAATTTTGCCCCAATGCCAGGTACATCATG
AAGACAGACACGGATGTTTTCATCAATACTGGCAATTTAGTGAAGTATCTTTTAAATTTA
AACCACTCAGAAAAGTTTTTCACAGGTTATCCTCTAATTGATAATTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22384866|gb|AAM96010.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22384866|gb|AAM96010.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               314-473, - strand, RNAz p=0.976935
               

               
               634-793, - strand, RNAz p=0.926343

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               314-473, - strand, RNAz p=0.976935
               

               
               634-793, - strand, RNAz p=0.926343

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               156-828, gnl|bosTau2|chr1 (68934695-68934021)
               

               
               156-828, gnl|Hg17|chr3 (162287280-162286606)
               

               
               156-828, gnl|Mm7|chr3 (69676968-69676294)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               156-828, gnl|bosTau2|chr1 (68934695-68934021)
               

               
               156-828, gnl|Hg17|chr3 (162287280-162286606)
               

               
               156-828, gnl|Mm7|chr3 (69676968-69676294)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               spl (0.286369)
               

               
               csp (0.161186)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               csp (0.161186)
               

               
               ecc (0.115035)

	314-473, - strand, RNAz p=0.976935
	634-793, - strand, RNAz p=0.926343

	156-828, gnl\|bosTau2\|chr1 (68934695-68934021)
	156-828, gnl\|Hg17\|chr3 (162287280-162286606)
	156-828, gnl\|Mm7\|chr3 (69676968-69676294)