Non-Coding RNA Search

Ss1.1-Pig4-TMW8048K12.3

Sequence:


               
               GTGTCTTATAAATGTAAGTGGTGATGCAGTGGTTTTTGTTCGTGAATCTGAGTTAGAAGT
GGTATCAACTCAGCAGCCTGCCACCAGCTGCCAGCCCTCCTGTATTGGAGGAGAGGTTAC
GACCTGAAGTCACTTAGAAGAAAAGTGCTCAGCTAAGTGACATTCATCTGTCTCCATTGT
TATGTCATTCATTATCTTATTGGACCTAAAAAAATGAACTTAATTTGAGAGAAATTAAAA
AAGAATTGCTGCACTATGAGTACATTTGACTTGTCTGGAATCACTCAGAGGCTTGAGAAT
TTTCAGATCTTGACGTTTTGTTTGCTAAGCCAACACAGACAGGCCCTGTGGAGCCTTGAC
CCCTTAGTGCAGGTAAATTTTTAGAGAGCTGTAGCAAAGATGGAAGCTATTTGTAATTTT
TGTTGATTTTAATAAAATCATAATTTAAAAAATGAAATGGTAAGATTATCAGGAAATTAG
GAGAGCTATCCTAGTGTAATTTAGAAAAAGTAAGCAAAAAATTCACAAATTGTTAATGAA
TTAATAATCTGATTCAAGGACTGTATGGGAAAAATGGAGGAAAGTTTTCAGAAAACGGCG
TGGTTTTCTTACTGTGTTATTTTGATGGGTAATTTGGTAACAACTGAATGGGAAAAGTGC
TTCAGCTGTCTTTGAAAAAGAAGTTAAAATTCTGTAACATATATCCATAATATATCCTAA
GTACTGGAAAAGAAAAAGTAATTTATCAGAGCCAGTGTGTTTCCATTGGAAGCTTAAATA
ACATCATTAAGGAAGGAGAAAAAACTATATAACTTCATTTCCCACCAAGTTTCAGTTTGT
GTTTGTCTAGAAGAGGCTTGGCTGCAGCTGGGAGAAAAGGCCAGTGAATTTTGTTGAAAT
AGTTAAAATATAATTAATTGATCTAATAGGAATAGAAAATTATTTTCTAATAAAATCATT
CTGCACTCCTGCCAGACAAACAATTTTAGTAATATCTTAGGGATTTTTGAGGTGAATTAG
ACTGTATTTGGCATAGAATTTGGAAATGTAACTTGAATGTAAATATGCTGCAGAATGTTG
AATGTATAGGTAGAAATACTTTTTTTGTCAATGCCAAATACCTATTACAAATGAACTTTA
AAAAGTACATTCCTCCTTTGCACACTAAAATTACTTTATAAAACTCATGATTTTGCTCTT
TCAGCGTAACAGTTGGCCTAAAGATTAGAAGTCATTTTCTTGTTATCACAGGTGTCAATA
TTTTTCTGTATTTTGTTTATAATTTTATTTTTTAAATAAAAAATTTATAAAGATAAACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTCTTATAAATGTAAGTGGTGATGCAGTGGTTTTTGTTCGTGAATCTGAGTTAGAAGT
GGTATCAACTCAGCAGCCTGCCACCAGCTGCCAGCCCTCCTGTATTGGAGGAGAGGTTAC
GACCTGAAGTCACTTAGAAGAAAAGTGCTCAGCTAAGTGACATTCATCTGTCTCCATTGT
TATGTCATTCATTATCTTATTGGACCTAAAAAAATGAACTTAATTTGAGAGAAATTAAAA
AAGAATTGCTGCACTATGAGTACATTTGACTTGTCTGGAATCACTCAGAGGCTTGAGAAT
TTTCAGATCTTGACGTTTTGTTTGCTAAGCCAACACAGACAGGCCCTGTGGAGCCTTGAC
CCCTTAGTGCAGGTAAATTTTTAGAGAGCTGTAGCAAAGATGGAAGCTATTTGTAATTTT
TGTTGATTTTAATAAAATCATAATTTAAAAAATGAAATGGTAAGATTATCAGGAAATTAG
GAGAGCTATCCTAGTGTAATTTAGAAAAAGTAAGCAAAAAATTCACAAATTGTTAATGAA
TTAATAATCTGATTCAAGGACTGTATGGGAAAAATGGAGGAAAGTTTTCAGAAAACGGCG
TGGTTTTCTTACTGTGTTATTTTGATGGGTAATTTGGTAACAACTGAATGGGAAAAGTGC
TTCAGCTGTCTTTGAAAAAGAAGTTAAAATTCTGTAACATATATCCATAATATATCCTAA
GTACTGGAAAAGAAAAAGTAATTTATCAGAGCCAGTGTGTTTCCATTGGAAGCTTAAATA
ACATCATTAAGGAAGGAGAAAAAACTATATAACTTCATTTCCCACCAAGTTTCAGTTTGT
GTTTGTCTAGAAGAGGCTTGGCTGCAGCTGGGAGAAAAGGCCAGTGAATTTTGTTGAAAT
AGTTAAAATATAATTAATTGATCTAATAGGAATAGAAAATTATTTTCTAATAAAATCATT
CTGCACTCCTGCCAGACAAACAATTTTAGTAATATCTTAGGGATTTTTGAGGTGAATTAG
ACTGTATTTGGCATAGAATTTGGAAATGTAACTTGAATGTAAATATGCTGCAGAATGTTG
AATGTATAGGTAGAAATACTTTTTTTGTCAATGCCAAATACCTATTACAAATGAACTTTA
AAAAGTACATTCCTCCTTTGCACACTAAAATTACTTTATAAAACTCATGATTTTGCTCTT
TCAGCGTAACAGTTGGCCTAAAGATTAGAAGTCATTTTCTTGTTATCACAGGTGTCAATA
TTTTTCTGTATTTTGTTTATAATTTTATTTTTTAAATAAAAAATTTATAAAGATAAACTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1311, gnl|bosTau2|chr5 (50403073-50404360)
               

               
               1-1311, gnl|Hg17|chr12 (22494087-22492784)
               

               
               1-1311, gnl|Mm7|chr6 (143103591-143102392)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1311, gnl|bosTau2|chr5 (50403073-50404360)
               

               
               1-1311, gnl|Hg17|chr12 (22494087-22492784)
               

               
               1-1311, gnl|Mm7|chr6 (143103591-143102392)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               fty (0.351679)
               

               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	1-1311, gnl\|bosTau2\|chr5 (50403073-50404360)
	1-1311, gnl\|Hg17\|chr12 (22494087-22492784)
	1-1311, gnl\|Mm7\|chr6 (143103591-143102392)

	fty (0.351679)
	fco (0.314416)
	ret (0.257467)
	tra (0.246184)
	cmu (0.186393)
	mgm (0.180343)
	rec (0.17307)
	nje (0.16592)
	bfe (0.149858)
	liv (0.146284)
	lin (0.145603)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	jca (0.11396)
	spc (0.113366)