Non-Coding RNA Search

Ss1.1-Pig4-TMW8048K22.3

Sequence:


               
               GGTGGACAGTTCCAGCCATGCAGCTGCTCATTTTTATTACAAGGTTGGGCATATGTACCT
TTGGTCCAAAGGAAAGAGGACCAGGCTGTTGGCACAGCCCCAAATCACTGCTCAAGGGAT
TCCCCTCAGAAATGGAGATGTTCTGGAAACTCAAATGTCCCCAAAGAGCCATTCCTCATG
TGGTTTCTGGCTAAAGTGGGCTGTAAAGACCTTAAAGAAGTAGGAAGGAGACATAAGGAA
TGAGAAAAAGAAGCAGTGGGATAAGTTAGTACTTCCTATATAATTGTACCTATCCCAGTT
GCTGAATTAGCCAGATGCTATTTTCTACTCTTTTGTTTTTCATTTAGTTATAAACAAAGC
ACATTCTAGCTGATAAAATTTTTTTTTAGGGCCACACCCACGGCATATGGAGGTTCTCAG
CTAGGGGTCGAATCAGAGCTGTAGCTGTCAGCCTATGCCACAGCCTCAGGAGCACAGGAC
CTGAGACCTACAACACAGCTCAGGGTAAGGCCAGATCCTTAACCCACTGAGAAAGGCCAG
GGATCGAACCTACGTCCTCGTGGATACTGGTCAGATTCATTTGCACTGAGCTATGACGGG
AACTCCAAGAAATGGTCATTCTTAACAGAAGAGACTTGTTATAGTAGACACTCCTATTTT
CATCTCTTTGTGTCCCAGCTGTGGGCCTTAAACTATACTCTTAAATCTTCTGAGGGTCTT
TGGCTGGAAGTTATAATTGTGGTTTCACATAGTCGTTTTTTAAGATGAAGGGAATTTAAC
TGGGGAAAAAATTATTTTTCCTTCCTTTTTTTAAATGCAGAGTTGAGAAGGCATTGATGT
ATTATGGTTAATGACAGACCTTTACGTTAATTTTATAAGTAGTATTTAGTCACCATTTAT
ATGAAAAATCTAAGAATTCTGTATTCTTTATAAAAAAGTCTACATTTATAAGCATTTTAT
ATTTTGAAAATCTATTGTGGAAAACAACATAAGAGGACTGAATTAGGTTGTGTATTCTCT
TTAAAATTAGCTAATTTCCACAGTGAGAATTTGGAAATGCATGCATTTTTCAAATTTATA
TTCACATTCTTTGCACATTTAAAAGTAGAAATGCATAATTTCTTATATATTTACTTTTAT
CGCATACCTTACAAAACATATTTTTAAAGACCAATACTCAAAGGATACAATAACATGTCG
ATCAGATGGGTTTCTCTGACGTGTTCTTTCTAACTGAGTTAACTGTTTAGCTTCTCGATT
CCTTGCTGTTAATGTTGCTTTGAGGTCATCCTGCAAATAAGGCATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGACAGTTCCAGCCATGCAGCTGCTCATTTTTATTACAAGGTTGGGCATATGTACCT
TTGGTCCAAAGGAAAGAGGACCAGGCTGTTGGCACAGCCCCAAATCACTGCTCAAGGGAT
TCCCCTCAGAAATGGAGATGTTCTGGAAACTCAAATGTCCCCAAAGAGCCATTCCTCATG
TGGTTTCTGGCTAAAGTGGGCTGTAAAGACCTTAAAGAAGTAGGAAGGAGACATAAGGAA
TGAGAAAAAGAAGCAGTGGGATAAGTTAGTACTTCCTATATAATTGTACCTATCCCAGTT
GCTGAATTAGCCAGATGCTATTTTCTACTCTTTTGTTTTTCATTTAGTTATAAACAAAGC
ACATTCTAGCTGATAAAATTTTTTTTTAGGGCCACACCCACGGCATATGGAGGTTCTCAG
CTAGGGGTCGAATCAGAGCTGTAGCTGTCAGCCTATGCCACAGCCTCAGGAGCACAGGAC
CTGAGACCTACAACACAGCTCAGGGTAAGGCCAGATCCTTAACCCACTGAGAAAGGCCAG
GGATCGAACCTACGTCCTCGTGGATACTGGTCAGATTCATTTGCACTGAGCTATGACGGG
AACTCCAAGAAATGGTCATTCTTAACAGAAGAGACTTGTTATAGTAGACACTCCTATTTT
CATCTCTTTGTGTCCCAGCTGTGGGCCTTAAACTATACTCTTAAATCTTCTGAGGGTCTT
TGGCTGGAAGTTATAATTGTGGTTTCACATAGTCGTTTTTTAAGATGAAGGGAATTTAAC
TGGGGAAAAAATTATTTTTCCTTCCTTTTTTTAAATGCAGAGTTGAGAAGGCATTGATGT
ATTATGGTTAATGACAGACCTTTACGTTAATTTTATAAGTAGTATTTAGTCACCATTTAT
ATGAAAAATCTAAGAATTCTGTATTCTTTATAAAAAAGTCTACATTTATAAGCATTTTAT
ATTTTGAAAATCTATTGTGGAAAACAACATAAGAGGACTGAATTAGGTTGTGTATTCTCT
TTAAAATTAGCTAATTTCCACAGTGAGAATTTGGAAATGCATGCATTTTTCAAATTTATA
TTCACATTCTTTGCACATTTAAAAGTAGAAATGCATAATTTCTTATATATTTACTTTTAT
CGCATACCTTACAAAACATATTTTTAAAGACCAATACTCAAAGGATACAATAACATGTCG
ATCAGATGGGTTTCTCTGACGTGTTCTTTCTAACTGAGTTAACTGTTTAGCTTCTCGATT
CCTTGCTGTTAATGTTGCTTTGAGGTCATCCTGCAAATAAGGCATTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               608-1308, gnl|bosTau2|chr14 (43843632-43844332)
               

               
               608-1308, gnl|Hg17|chr8 (94786969-94786297)
               

               
               608-1308, gnl|Mm7|chr4 (12094872-12095488)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               608-1308, gnl|bosTau2|chr14 (43843632-43844332)
               

               
               608-1308, gnl|Hg17|chr8 (94786969-94786297)
               

               
               608-1308, gnl|Mm7|chr4 (12094872-12095488)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               tra (0.123092)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	608-1308, gnl\|bosTau2\|chr14 (43843632-43844332)
	608-1308, gnl\|Hg17\|chr8 (94786969-94786297)
	608-1308, gnl\|Mm7\|chr4 (12094872-12095488)