Non-Coding RNA Search

Ss1.1-Pig4-TMW8048K24.5

Sequence:


               
               GCTTTTACCTTCTATATCTTGCTCCTGTTTTTCCACAGGATGCACCCTGGACTCTCATCA
GCCCCTCCCCAGGACAAACCACTTGGAATGGAAAGCCTGGAGCGCTACCAGAGGTAAAAC
TAGGTGAAAGAGGCAGGCGAAGACGGCTGGCCCCTCGAACAAAGGGCTGAAGAAGGCTGG
GGTAGCAGCAGAGGCAACCTCTCAATGCCTCGGTTCTGATCTTCACTGACACTTGGTTGG
GTAGAAGAAATTAAATTGAGTTCTGGTACCTGGGTCCTCCCTGGGCAAATCATTAGAAGC
TGACCTGGCTATCCAAGCGACCACCCCCTTCCCTGGCTCAGACTTTTGGTAAGAGCGGGC
CGGGATACCCACCGGGAGGGAAGAACATGGCTAGATGCTTCCCTCCATTGGCTGCCTCCT
GCATGGACCACACCCTGGGTTTGAAGATCACTCTTAGTTGAAGTTTGACAAAATAAGTTG
AAATTATAAAGAGCTATCTGTAGATAAATTTTAAGTTAATCAAGACAAACCCGAAGTTAT
TCCCTGGCATGCTCAAAGGATTTGTGTGCTTTTACTTATTAATAGGCCAAAGTCCCTCCA
ATTCCTGCAGCTGCTATCAGGAGTTCATCTATAATCTAAAACATGGGCAGGAAAAGTTGC
ATCTTGCTACCTTTGTGACATTAATTTGGTGGTATGCTGGGCTAGTGCATTCCAGCTTAT
AAAAGCCAATTGTTACACTTGCATTTTGAGAGCTGGTTGTTAGACACAGCCGTTATTTAA
CATTAAATCCTAGAAATGATTATCTTCGTTTTTAGTGGAATTTAACTACAACTCCTCAAA
ACTCACCACTCCCTAATTGTTTTTAAACCTATGCTCTTGAGGGTATGTGTTGTATCTGCA
GGGTAGACATAAACCATGTAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTTTACCTTCTATATCTTGCTCCTGTTTTTCCACAGGATGCACCCTGGACTCTCATCA
GCCCCTCCCCAGGACAAACCACTTGGAATGGAAAGCCTGGAGCGCTACCAGAGGTAAAAC
TAGGTGAAAGAGGCAGGCGAAGACGGCTGGCCCCTCGAACAAAGGGCTGAAGAAGGCTGG
GGTAGCAGCAGAGGCAACCTCTCAATGCCTCGGTTCTGATCTTCACTGACACTTGGTTGG
GTAGAAGAAATTAAATTGAGTTCTGGTACCTGGGTCCTCCCTGGGCAAATCATTAGAAGC
TGACCTGGCTATCCAAGCGACCACCCCCTTCCCTGGCTCAGACTTTTGGTAAGAGCGGGC
CGGGATACCCACCGGGAGGGAAGAACATGGCTAGATGCTTCCCTCCATTGGCTGCCTCCT
GCATGGACCACACCCTGGGTTTGAAGATCACTCTTAGTTGAAGTTTGACAAAATAAGTTG
AAATTATAAAGAGCTATCTGTAGATAAATTTTAAGTTAATCAAGACAAACCCGAAGTTAT
TCCCTGGCATGCTCAAAGGATTTGTGTGCTTTTACTTATTAATAGGCCAAAGTCCCTCCA
ATTCCTGCAGCTGCTATCAGGAGTTCATCTATAATCTAAAACATGGGCAGGAAAAGTTGC
ATCTTGCTACCTTTGTGACATTAATTTGGTGGTATGCTGGGCTAGTGCATTCCAGCTTAT
AAAAGCCAATTGTTACACTTGCATTTTGAGAGCTGGTTGTTAGACACAGCCGTTATTTAA
CATTAAATCCTAGAAATGATTATCTTCGTTTTTAGTGGAATTTAACTACAACTCCTCAAA
ACTCACCACTCCCTAATTGTTTTTAAACCTATGCTCTTGAGGGTATGTGTTGTATCTGCA
GGGTAGACATAAACCATGTAAAGG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               64-824, gnl|bosTau2|chr16 (1476081-1476846)
               

               
               64-824, gnl|Hg17|chr1 (202301193-202301958)
               

               
               64-824, gnl|Mm7|chr1 (131934436-131933792)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-824, gnl|bosTau2|chr16 (1476081-1476846)
               

               
               64-824, gnl|Hg17|chr1 (202301193-202301958)
               

               
               64-824, gnl|Mm7|chr1 (131934436-131933792)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               col (0.195008)
               

               
               cki (0.165235)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               cki (0.165235)

	64-824, gnl\|bosTau2\|chr16 (1476081-1476846)
	64-824, gnl\|Hg17\|chr1 (202301193-202301958)
	64-824, gnl\|Mm7\|chr1 (131934436-131933792)