Non-Coding RNA Search

Ss1.1-Pig4-TMW8048L04.3

Sequence:


               
               TTTATAAGCATTTCAATTAAAAAACACACTGCAGAAATTATTAGGCATTTCTGCTTTCCA
AGCTGTTATTAACACATTGAAAACAATACAGAGAATCTCTGTGTAGAATTTGAATCTGAT
CCAAGCTGAGCGTTAGGCTAAGTTTTGCCTATGTGGGAGGGTAGAATGACTATGCATGTA
CCTTTCATCATGCTGACATACCGAAATAAAATAGCACCTACTATCATATCAAGGGTAGCT
ATTCTTTACAGCATTTAGCAAACCTGACTCAGAGCACATATGAGGTTAGACATTAGCATA
CCAGTAAGTTATAATAAAGAGAAGGATCTTTATACCAAATTAAGAAAGAAAATATTGCAG
ATTCAGGTTTTTTCTTCTTCTTTCCACTGATCGAAGCATGTCTGCAGTCTCCTTTGTTGA
AGGCAGGATAGTCATAGGAGTTAAAGCTCCACAGCATAACTTTGGAGGAGTGTGCAGGGA
CTAGTTCTCTGCTGGGAGAGGTCCTTCCCATTCTTCCCTGCTGAGTATTTTTCCTGTTAG
TGTTTATACTGAGCTAGTACTGTAACTTGCAAATGAGTGCAAATTTAAATGCAATGTTTT
CCTCACAATTTGCACATTTCACATTTTTTGGACTGCTAGTTTTTCTATTTAAATATTTGC
CTTCATGTTAGGAATGTAATATGTGGACATGACATATTTGTAGTTAACTGGAACATACCA
AGTCAATACTTCTTTTCTTAGTCCAGTTTAGTACCTTTTCTTTTCATGTATTCAAGGTTA
AACACCAACCACATTTTAAGGCTAAGTTGAAACTAAACCAATAGAGCATTTCTTATAATG
AAAATGAATGTTAGGCTTTTTGTGGCCAGTTAATAGCTGATGAGATTGGTGATATTATTT
ATTACCACAGCCTATTGTATAAACTATGCAGAGTTAATTATTATTTGCTTGAAAAATATT
AGCCAGTGTTGTCATATTTTGATGTACTTCCTTGGTTATGACCAAAAAATATGTTCTTAA
AATACTGAAACCGATGTCTGTGTGTTTAAATGTTTACCAGCAAATTGTCTCATCATGTTA
ATGAGAATGTTTAATGCCTTTGTGGTAAATAGTAAAATATAATGGCATAAAAGCACCTTT
CTCTGAAGGCAATGTGATGTTTGGGCTGTGAAATACATATGTAAAAGAAAAATAAATGTT
ATTTGTTAATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATAAGCATTTCAATTAAAAAACACACTGCAGAAATTATTAGGCATTTCTGCTTTCCA
AGCTGTTATTAACACATTGAAAACAATACAGAGAATCTCTGTGTAGAATTTGAATCTGAT
CCAAGCTGAGCGTTAGGCTAAGTTTTGCCTATGTGGGAGGGTAGAATGACTATGCATGTA
CCTTTCATCATGCTGACATACCGAAATAAAATAGCACCTACTATCATATCAAGGGTAGCT
ATTCTTTACAGCATTTAGCAAACCTGACTCAGAGCACATATGAGGTTAGACATTAGCATA
CCAGTAAGTTATAATAAAGAGAAGGATCTTTATACCAAATTAAGAAAGAAAATATTGCAG
ATTCAGGTTTTTTCTTCTTCTTTCCACTGATCGAAGCATGTCTGCAGTCTCCTTTGTTGA
AGGCAGGATAGTCATAGGAGTTAAAGCTCCACAGCATAACTTTGGAGGAGTGTGCAGGGA
CTAGTTCTCTGCTGGGAGAGGTCCTTCCCATTCTTCCCTGCTGAGTATTTTTCCTGTTAG
TGTTTATACTGAGCTAGTACTGTAACTTGCAAATGAGTGCAAATTTAAATGCAATGTTTT
CCTCACAATTTGCACATTTCACATTTTTTGGACTGCTAGTTTTTCTATTTAAATATTTGC
CTTCATGTTAGGAATGTAATATGTGGACATGACATATTTGTAGTTAACTGGAACATACCA
AGTCAATACTTCTTTTCTTAGTCCAGTTTAGTACCTTTTCTTTTCATGTATTCAAGGTTA
AACACCAACCACATTTTAAGGCTAAGTTGAAACTAAACCAATAGAGCATTTCTTATAATG
AAAATGAATGTTAGGCTTTTTGTGGCCAGTTAATAGCTGATGAGATTGGTGATATTATTT
ATTACCACAGCCTATTGTATAAACTATGCAGAGTTAATTATTATTTGCTTGAAAAATATT
AGCCAGTGTTGTCATATTTTGATGTACTTCCTTGGTTATGACCAAAAAATATGTTCTTAA
AATACTGAAACCGATGTCTGTGTGTTTAAATGTTTACCAGCAAATTGTCTCATCATGTTA
ATGAGAATGTTTAATGCCTTTGTGGTAAATAGTAAAATATAATGGCATAAAAGCACCTTT
CTCTGAAGGCAATGTGATGTTTGGGCTGTGAAATACATATGTAAAAGAAAAATAAATGTT
ATTTGTTAATGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               807-923, + strand, RNAz p=0.553779

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               807-923, + strand, RNAz p=0.553779

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1208, gnl|bosTau2|chr10 (41252501-41253718)
               

               
               1-1208, gnl|Hg17|chr15 (49528456-49527282)
               

               
               1-1208, gnl|Mm7|chr9 (54396072-54394939)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1208, gnl|bosTau2|chr10 (41252501-41253718)
               

               
               1-1208, gnl|Hg17|chr15 (49528456-49527282)
               

               
               1-1208, gnl|Mm7|chr9 (54396072-54394939)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

	1-1208, gnl\|bosTau2\|chr10 (41252501-41253718)
	1-1208, gnl\|Hg17\|chr15 (49528456-49527282)
	1-1208, gnl\|Mm7\|chr9 (54396072-54394939)

	ret (0.257467)
	mgp (0.230681)
	tes (0.207814)
	liv (0.146284)
	lin (0.145603)
	thg (0.126791)
	tra (0.123092)