Non-Coding RNA Search

Ss1.1-Pig4-TMW8048L06.5

Sequence:


               
               AAGCTAAAAATTTCCCTCTCTTTCCTGCAAGTTTCCCAAACATCATGATTCTGATTTCCA
GGTCAGAGAGTAAGGTTGTATTCTTTGCATATGGAGAGTCCCTGGAACTGCATTGTGATG
GGCTAATTATTATGAACCTATTGTGAGCAAGGCCAGACCCTGGGTGTGGCAGAAGAAACT
TAACACACCTGCTCAATGATCTGCAGGCCCCAAGTGCTCCTGATGAACAGCTCCCTCCCT
GCAGCCTGGAGTTGGTGAGCAGACTCTTTCTTTGGGCTGAGCCAGTTCCCATGATTTTAA
AGGGATTGGGAGAAGGACCCAATATTTAAGAGGACTGGAAAGCTGTATGTGGCATTTCTG
ATTTCATTCCTAAATGGTAGTTCCCTTAAGTATGTGGAAAATAAGAAACTTTGCTAAAAT
TTTTAACTTGAAAAGACCATTGGTTTGAGAGAGATGAAAACCATGTCCATATAAAAACTT
GTGCGCAAATGTACACAGAAGCATTGTTCATTATAGCTCAAAAGAGGAAACAGTTCAAAT
GCCCATGAATCAATGAATGAATAAACAACCTTAGTATATCCCCGCAGTGAAATACTATTT
GGCAATAAAAAAGGAATGAAATATTGATGCATGCTGCAGTGTTGATGAGCCTTAAAACAT
TATGCTGAGTGAAAGAAGCCATTCACCAAGGAGCACATACTGTATGATTCTATTTGTATG
AAATTCCTATAATGGGCAAATCTATAGAGAGAGAAAACAGGCGAGTGGTCACCAAAGGCT
GTAGGTCAGAGTGGAGGCATGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCTAAAAATTTCCCTCTCTTTCCTGCAAGTTTCCCAAACATCATGATTCTGATTTCCA
GGTCAGAGAGTAAGGTTGTATTCTTTGCATATGGAGAGTCCCTGGAACTGCATTGTGATG
GGCTAATTATTATGAACCTATTGTGAGCAAGGCCAGACCCTGGGTGTGGCAGAAGAAACT
TAACACACCTGCTCAATGATCTGCAGGCCCCAAGTGCTCCTGATGAACAGCTCCCTCCCT
GCAGCCTGGAGTTGGTGAGCAGACTCTTTCTTTGGGCTGAGCCAGTTCCCATGATTTTAA
AGGGATTGGGAGAAGGACCCAATATTTAAGAGGACTGGAAAGCTGTATGTGGCATTTCTG
ATTTCATTCCTAAATGGTAGTTCCCTTAAGTATGTGGAAAATAAGAAACTTTGCTAAAAT
TTTTAACTTGAAAAGACCATTGGTTTGAGAGAGATGAAAACCATGTCCATATAAAAACTT
GTGCGCAAATGTACACAGAAGCATTGTTCATTATAGCTCAAAAGAGGAAACAGTTCAAAT
GCCCATGAATCAATGAATGAATAAACAACCTTAGTATATCCCCGCAGTGAAATACTATTT
GGCAATAAAAAAGGAATGAAATATTGATGCATGCTGCAGTGTTGATGAGCCTTAAAACAT
TATGCTGAGTGAAAGAAGCCATTCACCAAGGAGCACATACTGTATGATTCTATTTGTATG
AAATTCCTATAATGGGCAAATCTATAGAGAGAGAAAACAGGCGAGTGGTCACCAAAGGCT
GTAGGTCAGAGTGGAGGCATGGAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               445-762, gnl|bosTau2|chr10 (27173830-27173516)
               

               
               445-762, gnl|Hg17|chr15 (38654661-38654367)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               445-762, gnl|bosTau2|chr10 (27173830-27173516)
               

               
               445-762, gnl|Hg17|chr15 (38654661-38654367)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	445-762, gnl\|bosTau2\|chr10 (27173830-27173516)
	445-762, gnl\|Hg17\|chr15 (38654661-38654367)

	gul (0.177588)
	tbr (0.154178)
	ski (0.146735)
	hyp (0.142837)
	pgl (0.118483)
	ecc (0.115035)
	spc (0.113366)