Non-Coding RNA Search

Ss1.1-Pig4-TMW8048L09.3

Sequence:


               
               CTCTGCCTCTGCTCATTATGGCTGTCTGCTACTCAGGAATCATTAAAACACTGCTGAGAT
GCCCCAGTAGAAAAAAATACAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTCT
TCATCTTCTGGACACCCTACAACCTGGTTCTCCTTCTCCTTGCTTTTCAAATAAACCTGG
AGGCCAGCTGTGAACAGAGCAAACAGCTGGACCTGGCCCTGCTGGTGACGGAGGTGATCG
CCAATTCACACTGCTGCGTCAACCCCGTAATCTATGCCTTTGTTGGCGAGAGGTTCCAGA
AGCACCTCCGCCACTTTTTCCACAGACATGTGGCCATCTACCTGAGCAAATTCATCCCAT
TTATTCCTAGTGAAAGAATGGAAAGAACCAGCTCTGTCTCCCCATCAACGGGAGAGCAGG
AACTCTCTGCTGTATTTTAGGTCAGATGCAGAACATTGTCTGAAGAAGATGAAGCAAATA
CATTGACCTCTATACCAGTCCTTTGAACTTCCAGCACAGCACTGAAGCTCTGAAGACATT
AAAATATATACACAATGGTGGAGGTATATCTATGCACCCCAAAGTCATTACCAAAGGTCA
ATGGTTGGGCAGTGACTCGTGGTCAACCCTGAAGAGCAGAGCTTTGCTTGATTCTCTCAA
GAGTTACATACATTTTAATGCACCTGAAGTTAGATAGTTACTATATGCAGCTACAAACAA
GTAAAGCTTATCTTCTTTTACTTCAGCCAGTTATTGACATAAAGGAAACATATTTCACAA
AATACAATAAATCGATTACATTCCTTCTAAATGTGCCTAATTTTTTCTTTGCTTGATGAA
AATACATCTTAAAAATGTATATGCCTTATGTGAGAAAAAGAATGTGTGTGTGTGCACGTG
CGCATGTGCGTGTGTGTGTGGTGTGAGACTGGGTCACTTTGCTGTACAGTAGAAATTGAC
AGAACATTGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGCCTCTGCTCATTATGGCTGTCTGCTACTCAGGAATCATTAAAACACTGCTGAGAT
GCCCCAGTAGAAAAAAATACAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTCT
TCATCTTCTGGACACCCTACAACCTGGTTCTCCTTCTCCTTGCTTTTCAAATAAACCTGG
AGGCCAGCTGTGAACAGAGCAAACAGCTGGACCTGGCCCTGCTGGTGACGGAGGTGATCG
CCAATTCACACTGCTGCGTCAACCCCGTAATCTATGCCTTTGTTGGCGAGAGGTTCCAGA
AGCACCTCCGCCACTTTTTCCACAGACATGTGGCCATCTACCTGAGCAAATTCATCCCAT
TTATTCCTAGTGAAAGAATGGAAAGAACCAGCTCTGTCTCCCCATCAACGGGAGAGCAGG
AACTCTCTGCTGTATTTTAGGTCAGATGCAGAACATTGTCTGAAGAAGATGAAGCAAATA
CATTGACCTCTATACCAGTCCTTTGAACTTCCAGCACAGCACTGAAGCTCTGAAGACATT
AAAATATATACACAATGGTGGAGGTATATCTATGCACCCCAAAGTCATTACCAAAGGTCA
ATGGTTGGGCAGTGACTCGTGGTCAACCCTGAAGAGCAGAGCTTTGCTTGATTCTCTCAA
GAGTTACATACATTTTAATGCACCTGAAGTTAGATAGTTACTATATGCAGCTACAAACAA
GTAAAGCTTATCTTCTTTTACTTCAGCCAGTTATTGACATAAAGGAAACATATTTCACAA
AATACAATAAATCGATTACATTCCTTCTAAATGTGCCTAATTTTTTCTTTGCTTGATGAA
AATACATCTTAAAAATGTATATGCCTTATGTGAGAAAAAGAATGTGTGTGTGTGCACGTG
CGCATGTGCGTGTGTGTGTGGTGTGAGACTGGGTCACTTTGCTGTACAGTAGAAATTGAC
AGAACATTGTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|41688302|dbj|BAD08654.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|41688302|dbj|BAD08654.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               317-471, - strand, RNAz p=0.994476

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               317-471, - strand, RNAz p=0.994476

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-808, gnl|bosTau2|chr22 (42449225-42450059)
               

               
               1-808, gnl|Hg17|chr3 (46282279-46283120)
               

               
               1-808, gnl|Mm7|chr9 (123748169-123748976)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-808, gnl|bosTau2|chr22 (42449225-42450059)
               

               
               1-808, gnl|Hg17|chr3 (46282279-46283120)
               

               
               1-808, gnl|Mm7|chr9 (123748169-123748976)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               thg (0.253582)
               

               
               cbl (0.229595)
               

               
               fco (0.157208)
               

               
               nbm (0.0993246)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               cbl (0.229595)
               

               
               fco (0.157208)
               

               
               nbm (0.0993246)

	1-808, gnl\|bosTau2\|chr22 (42449225-42450059)
	1-808, gnl\|Hg17\|chr3 (46282279-46283120)
	1-808, gnl\|Mm7\|chr9 (123748169-123748976)