Ss1.1-Pig4-TMW8048L10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCACTTGGCCGGGTCCAGGAGAGGTGGGCGGCGGAGGGCCTCGGTGCACCAAGCCCCC GGTTTCGACCGTGCGAGGTGTCCGGGCCAGGAGCGCGAGATCCGATTCCGGAGCTGCCAT GATTGAAGTAGTAGCAGAGTTGAGCAGAGGTCCTGTGTTTCTGGCGGGGGAAGCGCTGGA GTGTGTGGTGACTGTCACCAACCCCCTGCCGCCTACGGCCACGTCTGCATCCAGTGAGGC TCTGGCTTGGGCCAGTGCTCAAATCCACTGCCAGTTTCATGCCAGTGAGAGTCGAGTAGC CCTGCCTCCCCCTGACTCCAGTCAACCAGATGTCCAGCCTGAGAGCCAGACTGTCTTTCT ACCACACCGAGGTGAGAGGGGTCAGTGTATACTTTCCACTCCACCAAAAATCCTGTTCTG TGACCTGAGGCTAGACCCTGGAGAGTCCAAATCATACTCCTACAGCGAAGTGCTGCCTAT AGAGGGACCACCCTCCTTTCGGGGTCAGTCAGTGAAGTATGTCTACAAACTGACCATTGG CTGCCAGCGCGTCAACTCCCCCATCACTTTACTCAGGGTCCCACTGAGGGTTCTTGTGCT GACTGGCCTTCAAGATGTCCAGTTTCCCCAGGATGAGGCTGTAGCCCCATCCAGTCCATT CCTGGAGGAGGATGAAGGTGGGAAGAAGGATTCATGGCTCGCCGAGCTGGCTGGGGAGCG CCTCATGGCTGCTACATCCTGCCGCAGCCTCCATCTGTACAACATCAGTGATGGCCGAGG AAAAGTGGGGACGTTTGGCATCTTCAAATCTGTATACAGACTCGGCGAGGATGTAGTGGG GACCTTGAACTTAGGGGAAGGAACTGTAGCGTGTTTGCAGTTTTCAGTAAGCTTACAGAC CGAGGAGCGTGTGCAGCCTGAGTACCAGCGGCGCCGTGGGGCAGGGGGTGCCCCCTCTGT GTCTCATGTGACCCATGCCCGGCACCAGGAGTCCTGCCTGCATACCACCAGAACCAGCTT CTCCCTCCCCATCCCCCTCAGCTCCACCCCAGGCTTCTGCACAGCCATTGTATCCCTGAA GTGGCGTTTGCATTTTGAATTCGTGACATCCCGGGAGCCAGGGTTGGTGCTCTTACCTCC CACGGAACAGCCCGAGCCTGTCACCTGGACGGGGCCTGAGCAAGTGCCTGTAGACACCTT CAGCTGGGACCTCCCCATCAAGGTGCTGCCTACAAGCCCTACCTTGGCCTCCTATGCGGC CCCAGGTCCCAGCACCAGCACCATAACCATCTGAAACTGGCCCACGTGGCACTGCTTTCT TCCGGATACTGAGAACTCAGCACCTGGACTCTAGTAGGACCCGTTTTTTCCACCTGGGGT CCAGCGGCACAGACAATGAAAGGCAGGCTTTCAGCTGTAGCATTAACTTATTTATTCAGA ATAAATTGGCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCACTTGGCCGGGTCCAGGAGAGGTGGGCGGCGGAGGGCCTCGGTGCACCAAGCCCCC GGTTTCGACCGTGCGAGGTGTCCGGGCCAGGAGCGCGAGATCCGATTCCGGAGCTGCCAT GATTGAAGTAGTAGCAGAGTTGAGCAGAGGTCCTGTGTTTCTGGCGGGGGAAGCGCTGGA GTGTGTGGTGACTGTCACCAACCCCCTGCCGCCTACGGCCACGTCTGCATCCAGTGAGGC TCTGGCTTGGGCCAGTGCTCAAATCCACTGCCAGTTTCATGCCAGTGAGAGTCGAGTAGC CCTGCCTCCCCCTGACTCCAGTCAACCAGATGTCCAGCCTGAGAGCCAGACTGTCTTTCT ACCACACCGAGGTGAGAGGGGTCAGTGTATACTTTCCACTCCACCAAAAATCCTGTTCTG TGACCTGAGGCTAGACCCTGGAGAGTCCAAATCATACTCCTACAGCGAAGTGCTGCCTAT AGAGGGACCACCCTCCTTTCGGGGTCAGTCAGTGAAGTATGTCTACAAACTGACCATTGG CTGCCAGCGCGTCAACTCCCCCATCACTTTACTCAGGGTCCCACTGAGGGTTCTTGTGCT GACTGGCCTTCAAGATGTCCAGTTTCCCCAGGATGAGGCTGTAGCCCCATCCAGTCCATT CCTGGAGGAGGATGAAGGTGGGAAGAAGGATTCATGGCTCGCCGAGCTGGCTGGGGAGCG CCTCATGGCTGCTACATCCTGCCGCAGCCTCCATCTGTACAACATCAGTGATGGCCGAGG AAAAGTGGGGACGTTTGGCATCTTCAAATCTGTATACAGACTCGGCGAGGATGTAGTGGG GACCTTGAACTTAGGGGAAGGAACTGTAGCGTGTTTGCAGTTTTCAGTAAGCTTACAGAC CGAGGAGCGTGTGCAGCCTGAGTACCAGCGGCGCCGTGGGGCAGGGGGTGCCCCCTCTGT GTCTCATGTGACCCATGCCCGGCACCAGGAGTCCTGCCTGCATACCACCAGAACCAGCTT CTCCCTCCCCATCCCCCTCAGCTCCACCCCAGGCTTCTGCACAGCCATTGTATCCCTGAA GTGGCGTTTGCATTTTGAATTCGTGACATCCCGGGAGCCAGGGTTGGTGCTCTTACCTCC CACGGAACAGCCCGAGCCTGTCACCTGGACGGGGCCTGAGCAAGTGCCTGTAGACACCTT CAGCTGGGACCTCCCCATCAAGGTGCTGCCTACAAGCCCTACCTTGGCCTCCTATGCGGC CCCAGGTCCCAGCACCAGCACCATAACCATCTGAAACTGGCCCACGTGGCACTGCTTTCT TCCGGATACTGAGAACTCAGCACCTGGACTCTAGTAGGACCCGTTTTTTCCACCTGGGGT CCAGCGGCACAGACAATGAAAGGCAGGCTTTCAGCTGTAGCATTAACTTATTTATTCAGA ATAAATTGGCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 233-1452, - strand, RNAz p=0.986528 | |
| 605-752, + strand, RNAz p=0.99642 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 233-1452, - strand, RNAz p=0.986528 | |
| 605-752, + strand, RNAz p=0.99642 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 233-378, gnl|bosTau2|chr8 (28483519-28483664) | |
| 233-378, gnl|Hg17|chr9 (35740238-35740383) | |
| 233-378, gnl|Mm7|chr4 (43593699-43593844) | |
| 605-752, gnl|bosTau2|chr8 (28484546-28484693) | |
| 605-752, gnl|canFam2|chr11 (55307640-55307802) | |
| 605-752, gnl|danRer3|chr7 (11129941-11130091) | |
| 605-752, gnl|dasNov1|scaffold_62744 (6981-6819) | |
| 605-752, gnl|echTel1|scaffold_306867 (54492-54344) | |
| 605-752, gnl|fr1|chrUn (150536672-150536832) | |
| 605-752, gnl|galGal2|chrZ_random (8418265-8418157) | |
| 605-752, gnl|hg17|chr9 (35741263-35741425) | |
| 605-752, gnl|Hg17|chr9 (35741262-35741409) | |
| 605-752, gnl|loxAfr1|scaffold_47560 (2936-3098) | |
| 605-752, gnl|mm7|chr4 (43594678-43594840) | |
| 605-752, gnl|Mm7|chr4 (43594677-43594824) | |
| 605-752, gnl|monDom2|scaffold_17 (45775681-45775520) | |
| 605-752, gnl|oryCun1|scaffold_181089 (6965-6806) | |
| 605-752, gnl|panTro1|chr11 (36300374-36300536) | |
| 605-752, gnl|rheMac2|chr15 (41770280-41770118) | |
| 605-752, gnl|rn3|chr5 (60059692-60059854) | |
| 605-752, gnl|tetNig1|chrUn_random (21600424-21600265) | |
| 605-752, gnl|xenTro1|scaffold_1685 (77614-77770) | |
| 753-880, gnl|bosTau2|chr8 (28484877-28485004) | |
| 753-880, gnl|Hg17|chr9 (35741624-35741751) | |
| 753-880, gnl|Mm7|chr4 (43595002-43595129) | |
| 1070-1452, gnl|bosTau2|chr8 (28485941-28486323) | |
| 1070-1452, gnl|Hg17|chr9 (35742647-35743030) | |
| 1070-1452, gnl|Mm7|chr4 (43596673-43597066) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 233-378, gnl|bosTau2|chr8 (28483519-28483664) | |
| 233-378, gnl|Hg17|chr9 (35740238-35740383) | |
| 233-378, gnl|Mm7|chr4 (43593699-43593844) | |
| 605-752, gnl|bosTau2|chr8 (28484546-28484693) | |
| 605-752, gnl|canFam2|chr11 (55307640-55307802) | |
| 605-752, gnl|danRer3|chr7 (11129941-11130091) | |
| 605-752, gnl|dasNov1|scaffold_62744 (6981-6819) | |
| 605-752, gnl|echTel1|scaffold_306867 (54492-54344) | |
| 605-752, gnl|fr1|chrUn (150536672-150536832) | |
| 605-752, gnl|galGal2|chrZ_random (8418265-8418157) | |
| 605-752, gnl|hg17|chr9 (35741263-35741425) | |
| 605-752, gnl|Hg17|chr9 (35741262-35741409) | |
| 605-752, gnl|loxAfr1|scaffold_47560 (2936-3098) | |
| 605-752, gnl|mm7|chr4 (43594678-43594840) | |
| 605-752, gnl|Mm7|chr4 (43594677-43594824) | |
| 605-752, gnl|monDom2|scaffold_17 (45775681-45775520) | |
| 605-752, gnl|oryCun1|scaffold_181089 (6965-6806) | |
| 605-752, gnl|panTro1|chr11 (36300374-36300536) | |
| 605-752, gnl|rheMac2|chr15 (41770280-41770118) | |
| 605-752, gnl|rn3|chr5 (60059692-60059854) | |
| 605-752, gnl|tetNig1|chrUn_random (21600424-21600265) | |
| 605-752, gnl|xenTro1|scaffold_1685 (77614-77770) | |
| 753-880, gnl|bosTau2|chr8 (28484877-28485004) | |
| 753-880, gnl|Hg17|chr9 (35741624-35741751) | |
| 753-880, gnl|Mm7|chr4 (43595002-43595129) | |
| 1070-1452, gnl|bosTau2|chr8 (28485941-28486323) | |
| 1070-1452, gnl|Hg17|chr9 (35742647-35743030) | |
| 1070-1452, gnl|Mm7|chr4 (43596673-43597066) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| clu (0.239292) | |
| ton (0.1755) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eru (0.120048) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.239292) | |
| ton (0.1755) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eru (0.120048) |