Ss1.1-Pig4-TMW8048L18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTGTCACAGGCATTCTTGTTAGTCAGATCATAGGCCTCGACTTTCTCCTGGGCAATCA TGAGCTATGGCACATCCTGCTTGGTCTATCTGCTGTGCCAGCTGTTCTCCAATCTCTGAT GCTCTTCTTCTGTCCAGAAAGCCCAAGATACCTTTACATCAAGCTGGATGAGGAAGCCAA AGCAAGGAAAAGCTTGAAAAAACTCAGAGGAAGTGATGATGTCACCAAAGACATCACCGA GATGCGAAAAGAAAGGGAAGAAGCATCAAGTGAAAAGAAAGTCTCCATAATTCAGCTCTT CACCAATTCCAGCTACCGACAGCCTATTCTAGTAGCACTGATGCTGCATATGGCTCAGCA ATTTTCTGGAATCAATGGGATCTTTTACTACTCAACCAGCATTTTTCAGACAGCTGGAAT CAGCCAACCTGTTTACGCAACCATTGGAGTTGGCGCTATCAACACGATTTTCACTGCTCT CTCTGTTTTCCTTGTAGAGAAGGCAGGGCGACGCTCTCTGTTTCTAATTGGAATGAGTGG GATGTTTGTTTGTGCCATCTTCATGTCAGTGGGACTTGTGCTACTGGATAAATTGCCTTG GATGAGTTATGTGAGTATGACAGCCATATTCCTCTTTGTCAGTTTCTTTGAAATTGGGCC AGGCCCCATCCCCTGGTTCATGGTGGCCGAGTTTTTCAGTCAAGGACCACGCCCTGCTGC TTTAGCAATGGCTGCATTCAGCAACTGGACCTGCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTGTCACAGGCATTCTTGTTAGTCAGATCATAGGCCTCGACTTTCTCCTGGGCAATCA TGAGCTATGGCACATCCTGCTTGGTCTATCTGCTGTGCCAGCTGTTCTCCAATCTCTGAT GCTCTTCTTCTGTCCAGAAAGCCCAAGATACCTTTACATCAAGCTGGATGAGGAAGCCAA AGCAAGGAAAAGCTTGAAAAAACTCAGAGGAAGTGATGATGTCACCAAAGACATCACCGA GATGCGAAAAGAAAGGGAAGAAGCATCAAGTGAAAAGAAAGTCTCCATAATTCAGCTCTT CACCAATTCCAGCTACCGACAGCCTATTCTAGTAGCACTGATGCTGCATATGGCTCAGCA ATTTTCTGGAATCAATGGGATCTTTTACTACTCAACCAGCATTTTTCAGACAGCTGGAAT CAGCCAACCTGTTTACGCAACCATTGGAGTTGGCGCTATCAACACGATTTTCACTGCTCT CTCTGTTTTCCTTGTAGAGAAGGCAGGGCGACGCTCTCTGTTTCTAATTGGAATGAGTGG GATGTTTGTTTGTGCCATCTTCATGTCAGTGGGACTTGTGCTACTGGATAAATTGCCTTG GATGAGTTATGTGAGTATGACAGCCATATTCCTCTTTGTCAGTTTCTTTGAAATTGGGCC AGGCCCCATCCCCTGGTTCATGGTGGCCGAGTTTTTCAGTCAAGGACCACGCCCTGCTGC TTTAGCAATGGCTGCATTCAGCAACTGGACCTGCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 485-587, + strand, RNAz p=0.558446 | |
| 589-756, + strand, RNAz p=0.66358 | |
| 616-729, + strand, RNAz p=0.637244 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 485-587, + strand, RNAz p=0.558446 | |
| 589-756, + strand, RNAz p=0.66358 | |
| 616-729, + strand, RNAz p=0.637244 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 186-379, gnl|bosTau2|chr1 (61779713-61779520) | |
| 186-379, gnl|Hg17|chr3 (172205969-172205776) | |
| 186-379, gnl|Mm7|chr3 (28535023-28535216) | |
| 485-587, gnl|bosTau2|chr1 (61772851-61772749) | |
| 485-587, gnl|canFam2|chr34 (38376630-38376727) | |
| 485-587, gnl|danRer3|chr3 (38729119-38729205) | |
| 485-587, gnl|dasNov1|scaffold_4085 (52275-52374) | |
| 485-587, gnl|fr1|chrUn (275219737-275219828) | |
| 485-587, gnl|galGal2|chr9 (19191548-19191443) | |
| 485-587, gnl|hg17|chr3 (172199542-172199640) | |
| 485-587, gnl|Hg17|chr3 (172199657-172199555) | |
| 485-587, gnl|loxAfr1|scaffold_49769 (8629-8727) | |
| 485-587, gnl|mm7|chr3 (28542057-28541959) | |
| 485-587, gnl|Mm7|chr3 (28541940-28542042) | |
| 485-587, gnl|monDom2|scaffold_52 (1103188-1103090) | |
| 485-587, gnl|oryCun1|scaffold_182158 (2347-2249) | |
| 485-587, gnl|panTro1|chr2 (175689781-175689879) | |
| 485-587, gnl|rheMac2|chr2 (116053522-116053424) | |
| 485-587, gnl|rn3|chr2 (116008832-116008734) | |
| 485-587, gnl|tetNig1|chrUn_random (46584455-46584351) | |
| 485-587, gnl|xenTro1|scaffold_3 (2310460-2310371) | |
| 589-756, gnl|bosTau2|chr1 (61771692-61771525) | |
| 589-756, gnl|canFam2|chr34 (38375788-38376027) | |
| 589-756, gnl|danRer3|chr23 (29619315-29619536) | |
| 589-756, gnl|dasNov1|scaffold_4085 (50831-51062) | |
| 589-756, gnl|echTel1|scaffold_270150 (8108-8340) | |
| 589-756, gnl|fr1|chrUn (218832316-218832550) | |
| 589-756, gnl|galGal2|chr9 (19192050-19191827) | |
| 589-756, gnl|hg17|chr3 (172198680-172198914) | |
| 589-756, gnl|Hg17|chr3 (172198885-172198718) | |
| 589-756, gnl|loxAfr1|scaffold_49769 (7808-8044) | |
| 589-756, gnl|mm7|chr3 (28542900-28542666) | |
| 589-756, gnl|Mm7|chr3 (28542693-28542860) | |
| 589-756, gnl|monDom2|scaffold_52 (1103925-1103689) | |
| 589-756, gnl|oryCun1|scaffold_182158 (3187-2949) | |
| 589-756, gnl|panTro1|chr2 (175688918-175689152) | |
| 589-756, gnl|rheMac2|chr2 (116054389-116054155) | |
| 589-756, gnl|rn3|chr2 (116009662-116009428) | |
| 589-756, gnl|tetNig1|chr10 (9057665-9057431) | |
| 589-756, gnl|xenTro1|scaffold_3 (2311519-2311292) | |
| 594-750, gnl|bosTau2|chr11 (43022607-43022451) | |
| 594-750, gnl|canFam2|chr15 (3491368-3491166) | |
| 594-750, gnl|danRer3|chr16 (38278580-38278377) | |
| 594-750, gnl|dasNov1|scaffold_99432 (4343-4163) | |
| 594-750, gnl|echTel1|scaffold_293251 (7227-7025) | |
| 594-750, gnl|fr1|chrUn (275219442-275219639) | |
| 594-750, gnl|galGal2|chr21 (6172564-6172767) | |
| 594-750, gnl|hg17|chr1 (43062358-43062561) | |
| 594-750, gnl|Hg17|chr1 (43062565-43062409) | |
| 594-750, gnl|loxAfr1|scaffold_54108 (9679-9499) | |
| 594-750, gnl|mm7|chr4 (118512383-118512181) | |
| 594-750, gnl|Mm7|chr4 (118512175-118512331) | |
| 594-750, gnl|monDom2|scaffold_43 (3794250-3794051) | |
| 594-750, gnl|oryCun1|scaffold_197434 (4140-4304) | |
| 594-750, gnl|panTro1|chr1 (44038146-44038349) | |
| 594-750, gnl|rheMac2|chr1 (45824109-45824311) | |
| 594-750, gnl|rn3|chr5 (139722896-139722696) | |
| 594-750, gnl|tetNig1|chr11 (8032632-8032835) | |
| 594-750, gnl|xenTro1|scaffold_5428 (5002-5199) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 186-379, gnl|bosTau2|chr1 (61779713-61779520) | |
| 186-379, gnl|Hg17|chr3 (172205969-172205776) | |
| 186-379, gnl|Mm7|chr3 (28535023-28535216) | |
| 485-587, gnl|bosTau2|chr1 (61772851-61772749) | |
| 485-587, gnl|canFam2|chr34 (38376630-38376727) | |
| 485-587, gnl|danRer3|chr3 (38729119-38729205) | |
| 485-587, gnl|dasNov1|scaffold_4085 (52275-52374) | |
| 485-587, gnl|fr1|chrUn (275219737-275219828) | |
| 485-587, gnl|galGal2|chr9 (19191548-19191443) | |
| 485-587, gnl|hg17|chr3 (172199542-172199640) | |
| 485-587, gnl|Hg17|chr3 (172199657-172199555) | |
| 485-587, gnl|loxAfr1|scaffold_49769 (8629-8727) | |
| 485-587, gnl|mm7|chr3 (28542057-28541959) | |
| 485-587, gnl|Mm7|chr3 (28541940-28542042) | |
| 485-587, gnl|monDom2|scaffold_52 (1103188-1103090) | |
| 485-587, gnl|oryCun1|scaffold_182158 (2347-2249) | |
| 485-587, gnl|panTro1|chr2 (175689781-175689879) | |
| 485-587, gnl|rheMac2|chr2 (116053522-116053424) | |
| 485-587, gnl|rn3|chr2 (116008832-116008734) | |
| 485-587, gnl|tetNig1|chrUn_random (46584455-46584351) | |
| 485-587, gnl|xenTro1|scaffold_3 (2310460-2310371) | |
| 589-756, gnl|bosTau2|chr1 (61771692-61771525) | |
| 589-756, gnl|canFam2|chr34 (38375788-38376027) | |
| 589-756, gnl|danRer3|chr23 (29619315-29619536) | |
| 589-756, gnl|dasNov1|scaffold_4085 (50831-51062) | |
| 589-756, gnl|echTel1|scaffold_270150 (8108-8340) | |
| 589-756, gnl|fr1|chrUn (218832316-218832550) | |
| 589-756, gnl|galGal2|chr9 (19192050-19191827) | |
| 589-756, gnl|hg17|chr3 (172198680-172198914) | |
| 589-756, gnl|Hg17|chr3 (172198885-172198718) | |
| 589-756, gnl|loxAfr1|scaffold_49769 (7808-8044) | |
| 589-756, gnl|mm7|chr3 (28542900-28542666) | |
| 589-756, gnl|Mm7|chr3 (28542693-28542860) | |
| 589-756, gnl|monDom2|scaffold_52 (1103925-1103689) | |
| 589-756, gnl|oryCun1|scaffold_182158 (3187-2949) | |
| 589-756, gnl|panTro1|chr2 (175688918-175689152) | |
| 589-756, gnl|rheMac2|chr2 (116054389-116054155) | |
| 589-756, gnl|rn3|chr2 (116009662-116009428) | |
| 589-756, gnl|tetNig1|chr10 (9057665-9057431) | |
| 589-756, gnl|xenTro1|scaffold_3 (2311519-2311292) | |
| 594-750, gnl|bosTau2|chr11 (43022607-43022451) | |
| 594-750, gnl|canFam2|chr15 (3491368-3491166) | |
| 594-750, gnl|danRer3|chr16 (38278580-38278377) | |
| 594-750, gnl|dasNov1|scaffold_99432 (4343-4163) | |
| 594-750, gnl|echTel1|scaffold_293251 (7227-7025) | |
| 594-750, gnl|fr1|chrUn (275219442-275219639) | |
| 594-750, gnl|galGal2|chr21 (6172564-6172767) | |
| 594-750, gnl|hg17|chr1 (43062358-43062561) | |
| 594-750, gnl|Hg17|chr1 (43062565-43062409) | |
| 594-750, gnl|loxAfr1|scaffold_54108 (9679-9499) | |
| 594-750, gnl|mm7|chr4 (118512383-118512181) | |
| 594-750, gnl|Mm7|chr4 (118512175-118512331) | |
| 594-750, gnl|monDom2|scaffold_43 (3794250-3794051) | |
| 594-750, gnl|oryCun1|scaffold_197434 (4140-4304) | |
| 594-750, gnl|panTro1|chr1 (44038146-44038349) | |
| 594-750, gnl|rheMac2|chr1 (45824109-45824311) | |
| 594-750, gnl|rn3|chr5 (139722896-139722696) | |
| 594-750, gnl|tetNig1|chr11 (8032632-8032835) | |
| 594-750, gnl|xenTro1|scaffold_5428 (5002-5199) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.150489) |