Non-Coding RNA Search

Ss1.1-Pig4-TMW8048L20.5

Sequence:


               
               GTCATTTCTTGGCGACTAGAGGACACATTCAAAATGGCGGTAGTGGCTGGGCTGGTGCGG
AGGCCCCTGGAGCAGGTCTCCGGGCTGCTGCTGAGGAGGCGCTTCCACCGCACGGCGCCG
GCGGCGCTGCAGGTAACAGTTCGTGACGCTATAAATCAAGGTATGGATGAGGAGCTGGAA
AGAGATGAGAAGGTATTTCTCCTTGGGGAAGAAGTTGCTCAGTATGATGGGGCATATAAG
GTTAGTCGAGGCCTGTGGAAGAAGTATGGAGATAAGAGGATCATAGACACTCCCATATCT
GAGATGGGCTTTGCTGGAATTGCTGTAGGTGCGGCTATGGCTGGGTTGAGGCCCATTTGC
GAATTTATGACCTTCAATTTCTCTATGCAAGCCATTGACCAGGTTATAAACTCAGCTGCC
AAGACCTATTACATGTCGGGGGGCCTTCAGTCTGTGCCCATAGTCTTCAGGGGGCCCAAT
GGTGCCTCAGCAGGTGTAGCAGCCCAGCACTCACAGTGCTTTGCTGCCTGGTATGGGCAC
TGCCCAGGCTTAAAGGTGGTCAGCCCCTGGAGCTCAGAAGATGCGAAAGGACTTATTAAA
TCAGCCATTCGGGATAACAATCCAGTGGTGGTGCTGGAGAATGAATTAATGTATGGAGTT
CCTTTTGAACTTCCTGCAGAAGCTCAGTCAAAAGATTTTCTGATTCCTATTGGAAAAGCC
AAAATAGAAAGGCAAGGGACACACATAACGATAGTTTCCCATTCAAGACCTGTGGGCCAC
TGCTTAGAAGCTGCCACAGTGCTATCTAAAGAAGGAATTGAATGTGAGGTGATAAATATG
CGAACCATCAGACCAATGGACATTGAAACAATAGAAGCCAGTGTCATGAAGACCACTCAT
CTCATAACTGTGGAAGGAGGCTGGCCACAGTTTGGAATAGGAGCTGAAATTTGTGCCAGG
ATCATGGAAGGCCCCGCATTCAATTTCCTGGATGCTCCTGCAGTTCGAGTCACTGGTGCT
GATGTTCCTATGCCTTATGCAAAGATTCTGGAAGACAACTCTGTACCTCAGGTTAAAGAC
ATCATTTTTGCAATAAAGAAAACACTAAATATCTAGTTTGGACTTGAATTTAAAGTCAGT
GGGATTTACCTAAAATGCTTTCTGGATTGTCTTGTTAAGACCTTTTGATTCATGAAGTTA
TCTGTAAGGCAACAACACAGATGTTTTTGTGCTGGGAAGAACTTTAAATGTGTTTGTGGA
AAAACTTTCCACTCTCCTGCCTAGGTTCCATGCTATTTTTATCTGTTATAATTGCCTTGT
TCTTTGAGGAAGATTAATGTAAAATTCTGCTCTTTCACTAAAAGGATAAGGTATGAATGT
GGCAGAGTCCTGATGAAAGATATATCCAAAAAAAGATAACTTATATGTAAAAATAAAAGC
ATATAATCTACATTTACTGTTATTGTTTTGATAAGGAATAAAGGAATTCCTAATTCTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCATTTCTTGGCGACTAGAGGACACATTCAAAATGGCGGTAGTGGCTGGGCTGGTGCGG
AGGCCCCTGGAGCAGGTCTCCGGGCTGCTGCTGAGGAGGCGCTTCCACCGCACGGCGCCG
GCGGCGCTGCAGGTAACAGTTCGTGACGCTATAAATCAAGGTATGGATGAGGAGCTGGAA
AGAGATGAGAAGGTATTTCTCCTTGGGGAAGAAGTTGCTCAGTATGATGGGGCATATAAG
GTTAGTCGAGGCCTGTGGAAGAAGTATGGAGATAAGAGGATCATAGACACTCCCATATCT
GAGATGGGCTTTGCTGGAATTGCTGTAGGTGCGGCTATGGCTGGGTTGAGGCCCATTTGC
GAATTTATGACCTTCAATTTCTCTATGCAAGCCATTGACCAGGTTATAAACTCAGCTGCC
AAGACCTATTACATGTCGGGGGGCCTTCAGTCTGTGCCCATAGTCTTCAGGGGGCCCAAT
GGTGCCTCAGCAGGTGTAGCAGCCCAGCACTCACAGTGCTTTGCTGCCTGGTATGGGCAC
TGCCCAGGCTTAAAGGTGGTCAGCCCCTGGAGCTCAGAAGATGCGAAAGGACTTATTAAA
TCAGCCATTCGGGATAACAATCCAGTGGTGGTGCTGGAGAATGAATTAATGTATGGAGTT
CCTTTTGAACTTCCTGCAGAAGCTCAGTCAAAAGATTTTCTGATTCCTATTGGAAAAGCC
AAAATAGAAAGGCAAGGGACACACATAACGATAGTTTCCCATTCAAGACCTGTGGGCCAC
TGCTTAGAAGCTGCCACAGTGCTATCTAAAGAAGGAATTGAATGTGAGGTGATAAATATG
CGAACCATCAGACCAATGGACATTGAAACAATAGAAGCCAGTGTCATGAAGACCACTCAT
CTCATAACTGTGGAAGGAGGCTGGCCACAGTTTGGAATAGGAGCTGAAATTTGTGCCAGG
ATCATGGAAGGCCCCGCATTCAATTTCCTGGATGCTCCTGCAGTTCGAGTCACTGGTGCT
GATGTTCCTATGCCTTATGCAAAGATTCTGGAAGACAACTCTGTACCTCAGGTTAAAGAC
ATCATTTTTGCAATAAAGAAAACACTAAATATCTAGTTTGGACTTGAATTTAAAGTCAGT
GGGATTTACCTAAAATGCTTTCTGGATTGTCTTGTTAAGACCTTTTGATTCATGAAGTTA
TCTGTAAGGCAACAACACAGATGTTTTTGTGCTGGGAAGAACTTTAAATGTGTTTGTGGA
AAAACTTTCCACTCTCCTGCCTAGGTTCCATGCTATTTTTATCTGTTATAATTGCCTTGT
TCTTTGAGGAAGATTAATGTAAAATTCTGCTCTTTCACTAAAAGGATAAGGTATGAATGT
GGCAGAGTCCTGATGAAAGATATATCCAAAAAAAGATAACTTATATGTAAAAATAAAAGC
ATATAATCTACATTTACTGTTATTGTTTTGATAAGGAATAAAGGAATTCCTAATTCTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|448581|prf||1917268B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|448581|prf||1917268B

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               429-546, + strand, RNAz p=0.758637

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               429-546, + strand, RNAz p=0.758637

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               18-1507, gnl|bosTau2|chr15 (24763639-24765127)
               

               
               18-1507, gnl|Hg17|chr3 (58394592-58388403)
               

               
               18-1507, gnl|Mm7|chr1 (4766707-4768146)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-1507, gnl|bosTau2|chr15 (24763639-24765127)
               

               
               18-1507, gnl|Hg17|chr3 (58394592-58388403)
               

               
               18-1507, gnl|Mm7|chr1 (4766707-4768146)

Expressed library(ies): 65 entry(ies)

More info

Expressed library(ies): 65 entry(ies)

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               kid (1.16762)
               

               
               fat (1.03199)
               

               
               isp (0.902256)
               

               
               ssp (0.677599)
               

               
               vin (0.665115)
               

               
               ret (0.643666)
               

               
               sug (0.636456)
               

               
               hea (0.613497)
               

               
               bfe (0.599431)
               

               
               fce (0.543183)
               

               
               ill (0.526778)
               

               
               nco (0.485201)
               

               
               ldo (0.485013)
               

               
               fco (0.471624)
               

               
               tbr (0.462535)
               

               
               mgp (0.461361)
               

               
               tes (0.415628)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               cmu (0.372787)
               

               
               tra (0.369276)
               

               
               sag (0.36543)
               

               
               rec (0.346141)
               

               
               eye (0.341006)
               

               
               spc (0.340097)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               hyp (0.285673)
               

               
               csk (0.281492)
               

               
               cga (0.279096)
               

               
               ste (0.270416)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 65 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (1.16762)
               

               
               fat (1.03199)
               

               
               isp (0.902256)
               

               
               ssp (0.677599)
               

               
               vin (0.665115)
               

               
               ret (0.643666)
               

               
               sug (0.636456)
               

               
               hea (0.613497)
               

               
               bfe (0.599431)
               

               
               fce (0.543183)
               

               
               ill (0.526778)
               

               
               nco (0.485201)
               

               
               ldo (0.485013)
               

               
               fco (0.471624)
               

               
               tbr (0.462535)
               

               
               mgp (0.461361)
               

               
               tes (0.415628)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               cmu (0.372787)
               

               
               tra (0.369276)
               

               
               sag (0.36543)
               

               
               rec (0.346141)
               

               
               eye (0.341006)
               

               
               spc (0.340097)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               hyp (0.285673)
               

               
               csk (0.281492)
               

               
               cga (0.279096)
               

               
               ste (0.270416)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	18-1507, gnl\|bosTau2\|chr15 (24763639-24765127)
	18-1507, gnl\|Hg17\|chr3 (58394592-58388403)
	18-1507, gnl\|Mm7\|chr1 (4766707-4768146)

	kid (1.16762)
	fat (1.03199)
	isp (0.902256)
	ssp (0.677599)
	vin (0.665115)
	ret (0.643666)
	sug (0.636456)
	hea (0.613497)
	bfe (0.599431)
	fce (0.543183)
	ill (0.526778)
	nco (0.485201)
	ldo (0.485013)
	fco (0.471624)
	tbr (0.462535)
	mgp (0.461361)
	tes (0.415628)
	aor (0.390549)
	elu (0.385356)
	nlu (0.383362)
	cmu (0.372787)
	tra (0.369276)
	sag (0.36543)
	rec (0.346141)
	eye (0.341006)
	spc (0.340097)
	cki (0.330469)
	sme (0.305437)
	cag (0.302389)
	hyp (0.285673)
	csk (0.281492)
	cga (0.279096)
	ste (0.270416)
	ute (0.265569)
	ova (0.258264)
	ese (0.253004)
	cbe (0.239234)
	med (0.232504)
	mas (0.210305)
	eje (0.197668)
	nep (0.183925)
	mgm (0.180343)
	sto (0.179824)
	fty (0.17584)
	fbs (0.175346)
	duo (0.172801)
	mcp (0.170648)
	fhi (0.169578)
	mga (0.160205)
	cli (0.152812)
	lun (0.150489)
	ski (0.146735)
	liv (0.146284)
	cst (0.140036)
	hlv (0.139256)
	nca (0.136874)
	che (0.136314)
	lyg (0.133103)
	nmm (0.132802)
	eru (0.120048)
	clu (0.119646)
	ebs (0.118301)
	jca (0.11396)
	nbm (0.0993246)
	jej (0.0989218)