Non-Coding RNA Search

Ss1.1-Pig4-TMW8048M02.3

Sequence:


               
               ACCTGAGGAGGACGAGGAGGACGAGGAGGAGGAGGAAGACGAGGAGGGAGATGAGGAGGC
CCCCACTCCAGGAGGGGCCTCCAGACTGGCAGGAGAGTCCACCAAGTCTCATAGAGCACC
TCTTGGCCCTGAGCAAGGCTTGCATCCCCTAACGTGGGTTCTGGCTCTTTCTTTCATAGC
TCTGATCATCATATTCACTTTGTCTTAGTATGCTCATTCTTGGCTTTCTCTGCTTTAATT
TATAAGTAAAATTGGCATGATTCCTGCTCCCAAGAGGCTATGTCTCATCGAGGAGCCCAA
AGTTCACGAACCAGTTCGAATTGCATATGACAGGCCCAAACATCAAAGGGAACACCTACT
CACTGAGCCTGGAAAGTCCTGTAAGCACTCAGGTGATGCTTCTACAGAGATGGCATTGAG
ACAGTGAAAGCGTGGGAGCTGGGGTGGAGTGTGATGGTGCATCTTTGTGCCACCTGTCGG
CCAGGGACCAGCACGCTGGCCATCTGTGCCCACCCTTGCTCTCTCCGGCAAAGGCCACTC
TGCAGGGAGTGTGCGTGTGAGTGAGCGCGATGTGCAGTTGCATAGCCTTGTCAAAGTCAC
AGTATCTTTTCTGTCATTCTAGTTCCAGGGTCTCTTCCATGAGGACGACAGGCATCCGGA
AAGTGCTAACTCGCCACTTTGGGTGCTTACTGTCTCTGCCTTGTTTCCATCACTGGAAAT
CATATAAAGAATTTTAGCATTTTTGGTCCTTGGTAAAACCTAGAAGACATTTGTGATGTT
ATAAAATGGAAGTTTTGGGGGTTTTTTCTTTTTTTTTTTTTAATCTAAGAAGTTGTGAAT
GTTGTTAATCACTTAGCAGTTGAAATAAATGTAGAGGAAACCCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTGAGGAGGACGAGGAGGACGAGGAGGAGGAGGAAGACGAGGAGGGAGATGAGGAGGC
CCCCACTCCAGGAGGGGCCTCCAGACTGGCAGGAGAGTCCACCAAGTCTCATAGAGCACC
TCTTGGCCCTGAGCAAGGCTTGCATCCCCTAACGTGGGTTCTGGCTCTTTCTTTCATAGC
TCTGATCATCATATTCACTTTGTCTTAGTATGCTCATTCTTGGCTTTCTCTGCTTTAATT
TATAAGTAAAATTGGCATGATTCCTGCTCCCAAGAGGCTATGTCTCATCGAGGAGCCCAA
AGTTCACGAACCAGTTCGAATTGCATATGACAGGCCCAAACATCAAAGGGAACACCTACT
CACTGAGCCTGGAAAGTCCTGTAAGCACTCAGGTGATGCTTCTACAGAGATGGCATTGAG
ACAGTGAAAGCGTGGGAGCTGGGGTGGAGTGTGATGGTGCATCTTTGTGCCACCTGTCGG
CCAGGGACCAGCACGCTGGCCATCTGTGCCCACCCTTGCTCTCTCCGGCAAAGGCCACTC
TGCAGGGAGTGTGCGTGTGAGTGAGCGCGATGTGCAGTTGCATAGCCTTGTCAAAGTCAC
AGTATCTTTTCTGTCATTCTAGTTCCAGGGTCTCTTCCATGAGGACGACAGGCATCCGGA
AAGTGCTAACTCGCCACTTTGGGTGCTTACTGTCTCTGCCTTGTTTCCATCACTGGAAAT
CATATAAAGAATTTTAGCATTTTTGGTCCTTGGTAAAACCTAGAAGACATTTGTGATGTT
ATAAAATGGAAGTTTTGGGGGTTTTTTCTTTTTTTTTTTTTAATCTAAGAAGTTGTGAAT
GTTGTTAATCACTTAGCAGTTGAAATAAATGTAGAGGAAACCCAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               639-757, + strand, RNAz p=0.932055

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               639-757, + strand, RNAz p=0.932055

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of AL832488, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of AL832488, +

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               126-885, gnl|bosTau2|chr7 (2436872-2436098)
               

               
               126-885, gnl|Hg17|chr19 (18963491-18962701)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-885, gnl|bosTau2|chr7 (2436872-2436098)
               

               
               126-885, gnl|Hg17|chr19 (18963491-18962701)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               eye (0.341006)
               

               
               cje (0.330469)
               

               
               fce (0.271592)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               eye (0.341006)
               

               
               cje (0.330469)
               

               
               fce (0.271592)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	126-885, gnl\|bosTau2\|chr7 (2436872-2436098)
	126-885, gnl\|Hg17\|chr19 (18963491-18962701)

	elu (0.385356)
	thg (0.380373)
	eye (0.341006)
	cje (0.330469)
	fce (0.271592)
	tes (0.207814)
	fcc (0.197785)
	mcp (0.170648)
	nje (0.16592)
	lun (0.150489)
	ski (0.146735)
	spl (0.143184)
	lnt (0.142308)
	che (0.136314)
	eru (0.120048)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)
	ldo (0.0970026)