Ss1.1-Pig4-TMW8048M07.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCGGCGTGAGTTGCATGTTGTGTGAGGATCCCGGGGCCGCCGCGTCGCTCGGGTCCT ACCATGGCCGTCACCATCACGCTCAAAACGCTGCAACAGCAGACCTTCAAGATCCGCATG GAGCCTGATGAGACGGTGAAGGTGCTAAAAGAGAAGATAGAAGCTGAGAAGGGTCGTGAT GCCTTCCCCGTGGCTGGACAGAAACTCATCTATGCTGGCAAGATCCTGAGTGACGATGTC CCCATCAGGGACTATCGAATTGATGAGAAGAACTTTGTGGTCGTCATGGTGACCAAGGCC AAAACTAGCCCAGGCACCTCAGTACCCCCAGAGGCCTCACCCACTGCTGCCCCGGAGTCT TCCACATCCTTCCCATTGGCCCCTGCCTCAGGCATGTCCCACCCCCCATCTCCTGCCAGA GAGGACAAGAGCCCATCGGAGGAATCGGTCCCCACGACATCTCCGGAGTCCGTGTCAGGC TCTGTTCCCTCTTCAGGTAGCAGCGGGCGAGAGGAAGACGCGGCCTCCACGCTAGTGACT GGCTCTGAGTATGAGACAATGCTGACAGAGATCACGTCCATGGGCTATGAGCGGGAGCGG GTCGTGGCTGCCCTGAGAGCCAGCTACAACAACCCCCACCGAGCCGTGGAGTATCTGCTC ACGGGAATTCCTGGGAGCCCCGAGCCAGAACATGGTTCTGTCCAGGAGAGCCAAGTATCG GAGCAGCCGCCTACGGAAGCAGGAGAGAACCCCCTGGAATTCCTGAGGGACCAGCCCCAG TTCCAGAACATGCGGCAGGTGATTCAGCAGAACCCGGCACTGCTGCCCGCCCTGCTCCAG CAGCTGGGCCAGGAGAACCCCCAGCTTTTACAGCAAATCAGCCGGCACCAGGAGCAGTTT ATCCAGATGTTGAATGAGCCCCCTGGGGAGCTGGCGGACATCTCTGACGTGGAGGGCGAG GTGGGTGCAATAGGTGAGGAGGCTCCACAAATGAACTACATCCAGGTGACGCCGCAGGAA AAAGAAGCTATAGAGAGGTTGAAGGCCCTGGGCTTCCCAGAGAGCCTGGTGATCCAGGCC TACTTCGCTTGTGAAAAAAACGAGAACTTGGCTGCCAACTTCCTCCTGAGTCAGAACTTT GATGACGAGTGATGCTGGGAGGCTAGGTTGCCCACCACCCCTCCCCCCTCCCCCCCCAAC TCCACAAAAGTTTTATAAAAGAAAAAATATATATATATATTCATGTTTATTTAAGAAGTG GGAAAAAAAATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCGGCGTGAGTTGCATGTTGTGTGAGGATCCCGGGGCCGCCGCGTCGCTCGGGTCCT ACCATGGCCGTCACCATCACGCTCAAAACGCTGCAACAGCAGACCTTCAAGATCCGCATG GAGCCTGATGAGACGGTGAAGGTGCTAAAAGAGAAGATAGAAGCTGAGAAGGGTCGTGAT GCCTTCCCCGTGGCTGGACAGAAACTCATCTATGCTGGCAAGATCCTGAGTGACGATGTC CCCATCAGGGACTATCGAATTGATGAGAAGAACTTTGTGGTCGTCATGGTGACCAAGGCC AAAACTAGCCCAGGCACCTCAGTACCCCCAGAGGCCTCACCCACTGCTGCCCCGGAGTCT TCCACATCCTTCCCATTGGCCCCTGCCTCAGGCATGTCCCACCCCCCATCTCCTGCCAGA GAGGACAAGAGCCCATCGGAGGAATCGGTCCCCACGACATCTCCGGAGTCCGTGTCAGGC TCTGTTCCCTCTTCAGGTAGCAGCGGGCGAGAGGAAGACGCGGCCTCCACGCTAGTGACT GGCTCTGAGTATGAGACAATGCTGACAGAGATCACGTCCATGGGCTATGAGCGGGAGCGG GTCGTGGCTGCCCTGAGAGCCAGCTACAACAACCCCCACCGAGCCGTGGAGTATCTGCTC ACGGGAATTCCTGGGAGCCCCGAGCCAGAACATGGTTCTGTCCAGGAGAGCCAAGTATCG GAGCAGCCGCCTACGGAAGCAGGAGAGAACCCCCTGGAATTCCTGAGGGACCAGCCCCAG TTCCAGAACATGCGGCAGGTGATTCAGCAGAACCCGGCACTGCTGCCCGCCCTGCTCCAG CAGCTGGGCCAGGAGAACCCCCAGCTTTTACAGCAAATCAGCCGGCACCAGGAGCAGTTT ATCCAGATGTTGAATGAGCCCCCTGGGGAGCTGGCGGACATCTCTGACGTGGAGGGCGAG GTGGGTGCAATAGGTGAGGAGGCTCCACAAATGAACTACATCCAGGTGACGCCGCAGGAA AAAGAAGCTATAGAGAGGTTGAAGGCCCTGGGCTTCCCAGAGAGCCTGGTGATCCAGGCC TACTTCGCTTGTGAAAAAAACGAGAACTTGGCTGCCAACTTCCTCCTGAGTCAGAACTTT GATGACGAGTGATGCTGGGAGGCTAGGTTGCCCACCACCCCTCCCCCCTCCCCCCCCAAC TCCACAAAAGTTTTATAAAAGAAAAAATATATATATATATTCATGTTTATTTAAGAAGTG GGAAAAAAAATC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-138, gnl|bosTau2|chr7 (8633024-8633161) | |
| 1-138, gnl|Hg17|chr19 (12917700-12917837) | |
| 1-138, gnl|Mm7|chr8 (83426738-83426601) | |
| 288-479, gnl|bosTau2|chr7 (8634940-8635131) | |
| 288-479, gnl|canFam2|chr20 (52248354-52248059) | |
| 288-479, gnl|fr1|chrUn (141164905-141165160) | |
| 288-479, gnl|hg17|chr19 (12919979-12920277) | |
| 288-479, gnl|Hg17|chr19 (12919981-12920172) | |
| 288-479, gnl|mm7|chr8 (83424774-83424474) | |
| 288-479, gnl|Mm7|chr8 (83424770-83424579) | |
| 288-479, gnl|monDom2|scaffold_159 (141726-142033) | |
| 288-479, gnl|oryCun1|scaffold_157802 (20115-19928) | |
| 288-479, gnl|panTro1|chr20 (13529236-13529534) | |
| 288-479, gnl|rheMac2|chr19 (12620607-12620903) | |
| 288-479, gnl|rn3|chr19 (24977908-24978199) | |
| 534-664, gnl|bosTau2|chr7 (8635446-8635576) | |
| 534-664, gnl|canFam2|chr20 (52247853-52247702) | |
| 534-664, gnl|danRer3|chr22 (4448459-4448594) | |
| 534-664, gnl|dasNov1|scaffold_226359 (419-291) | |
| 534-664, gnl|fr1|chrUn (236584462-236584316) | |
| 534-664, gnl|hg17|chr19 (12920486-12920637) | |
| 534-664, gnl|Hg17|chr19 (12920498-12920628) | |
| 534-664, gnl|loxAfr1|scaffold_15906 (26430-26536) | |
| 534-664, gnl|mm7|chr8 (83424260-83424111) | |
| 534-664, gnl|Mm7|chr8 (83424246-83424116) | |
| 534-664, gnl|monDom2|scaffold_159 (143600-143753) | |
| 534-664, gnl|oryCun1|scaffold_157802 (19881-19756) | |
| 534-664, gnl|panTro1|chr20 (13529802-13529941) | |
| 534-664, gnl|rheMac2|chr19 (12621112-12621263) | |
| 534-664, gnl|rn3|chr19 (24978406-24978552) | |
| 534-664, gnl|tetNig1|chrUn_random (92924331-92924183) | |
| 534-664, gnl|xenTro1|scaffold_415 (368045-367910) | |
| 738-873, gnl|bosTau2|chr7 (8636037-8636172) | |
| 738-873, gnl|Hg17|chr19 (12921087-12921222) | |
| 738-873, gnl|Mm7|chr8 (83423705-83423570) | |
| 1038-1270, gnl|bosTau2|chr7 (8638276-8638515) | |
| 1038-1270, gnl|Hg17|chr19 (12924749-12924973) | |
| 1038-1270, gnl|Mm7|chr8 (83421785-83421550) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-138, gnl|bosTau2|chr7 (8633024-8633161) | |
| 1-138, gnl|Hg17|chr19 (12917700-12917837) | |
| 1-138, gnl|Mm7|chr8 (83426738-83426601) | |
| 288-479, gnl|bosTau2|chr7 (8634940-8635131) | |
| 288-479, gnl|canFam2|chr20 (52248354-52248059) | |
| 288-479, gnl|fr1|chrUn (141164905-141165160) | |
| 288-479, gnl|hg17|chr19 (12919979-12920277) | |
| 288-479, gnl|Hg17|chr19 (12919981-12920172) | |
| 288-479, gnl|mm7|chr8 (83424774-83424474) | |
| 288-479, gnl|Mm7|chr8 (83424770-83424579) | |
| 288-479, gnl|monDom2|scaffold_159 (141726-142033) | |
| 288-479, gnl|oryCun1|scaffold_157802 (20115-19928) | |
| 288-479, gnl|panTro1|chr20 (13529236-13529534) | |
| 288-479, gnl|rheMac2|chr19 (12620607-12620903) | |
| 288-479, gnl|rn3|chr19 (24977908-24978199) | |
| 534-664, gnl|bosTau2|chr7 (8635446-8635576) | |
| 534-664, gnl|canFam2|chr20 (52247853-52247702) | |
| 534-664, gnl|danRer3|chr22 (4448459-4448594) | |
| 534-664, gnl|dasNov1|scaffold_226359 (419-291) | |
| 534-664, gnl|fr1|chrUn (236584462-236584316) | |
| 534-664, gnl|hg17|chr19 (12920486-12920637) | |
| 534-664, gnl|Hg17|chr19 (12920498-12920628) | |
| 534-664, gnl|loxAfr1|scaffold_15906 (26430-26536) | |
| 534-664, gnl|mm7|chr8 (83424260-83424111) | |
| 534-664, gnl|Mm7|chr8 (83424246-83424116) | |
| 534-664, gnl|monDom2|scaffold_159 (143600-143753) | |
| 534-664, gnl|oryCun1|scaffold_157802 (19881-19756) | |
| 534-664, gnl|panTro1|chr20 (13529802-13529941) | |
| 534-664, gnl|rheMac2|chr19 (12621112-12621263) | |
| 534-664, gnl|rn3|chr19 (24978406-24978552) | |
| 534-664, gnl|tetNig1|chrUn_random (92924331-92924183) | |
| 534-664, gnl|xenTro1|scaffold_415 (368045-367910) | |
| 738-873, gnl|bosTau2|chr7 (8636037-8636172) | |
| 738-873, gnl|Hg17|chr19 (12921087-12921222) | |
| 738-873, gnl|Mm7|chr8 (83423705-83423570) | |
| 1038-1270, gnl|bosTau2|chr7 (8638276-8638515) | |
| 1038-1270, gnl|Hg17|chr19 (12924749-12924973) | |
| 1038-1270, gnl|Mm7|chr8 (83421785-83421550) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| pla (0.66836) | |
| ton (0.351) | |
| nca (0.273748) | |
| nmm (0.265604) | |
| med (0.232504) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| cbl (0.114797) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.66836) | |
| ton (0.351) | |
| nca (0.273748) | |
| nmm (0.265604) | |
| med (0.232504) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| cbl (0.114797) |