Ss1.1-Pig4-TMW8048M09.5
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CTCGCTACCCGGCGCTGCGCGGCGAAGATGGCGGCCTCCGCCTGGGCGCGCACCGCCGTG
GTCCTTCTCTGTGTCTCTGATCTGCTGCTTCTCGTGCTGCTGCCGCCAAGGGCGTTCGCC
GCTGAGGGCCCAGCCAAAACGCCCAGCGAGGCTACTCCACCTCCCCGGAAGAAGAAGAAG
GATATTCGCGACTACAATGATGCGGACATGGCTCGTCTTCTGGAACAGTGGGAGAAAGAT
GACGACATAGAAGAAGGAGACCTCCCAGAGCACAAGAGGCCCTCCGCGCCTATCGACTTC
TCACAGATAGACCCGGGCAAGCCCGAGAGCATACTGAAAATGACGAAGAAAGGCAAGACG
CTTATGATGTTTGTCACTGTATCCGGAAACCCCACTGAGAAGGAGACGGAGGAAATCACA
AGCCTCTGGCAGGGCAGTCTTTTCAACGCCAACTATGACGTCCAAAGGTTCATCGTGGGA
TCAGACCGGGCCATCTTCATGCTGCGTGACGGGAGCTACGCCTGGGAGATCAAGGACTTT
TTGGTCAGTCAAGACAGGTGTGCCGATGTCACGCTGGAGGGACAGGTATACCCCGGGAAA
GGAGGCGGAAGCAAAGAGAAAAATAAAACCAAGCAAGAGAAGGGCAAAAAGAAGAAGGAG
GGAGACTCCAAATCTCGGGCTTCGAAGGACGACAACCGAGCTGGGAGTCAAAGACAAGAG
CTGTAGCGGGGCCGCTGCCACGGGCTCTGCACAGGAGCGGGCACAGGGACAGGGCGGCCG
TGGGGCACCACACACTGATGGACTTGTAGTTTCTGCTGGAAAAGCTCTGCCACATGACCA
GTTGGTGGTCCGTATGAGAATTCCTGTCTAAAAGTCTTCGAGAAAGAAAACATTGGCTTT
GTAATTAACATGGGACACTGACAAATGCACGTTTACTCTCAGATCACTTAGATGGAAACC
GGCGGTGTTGCTTTTTCCTTAAATATAGGGGAGTTGCTGGCTGGGTGGTGCCATCACCCC
GCTGGCCATACCTGCTCTGATCCGGCCCCCTGCTGTGTCTGTGCTGTTTACTTCTGTTAG
CTGAAAGGACACCAGGTTCTTAACCAGACAAACTGAAGACTCTTGACGTGATTGCATCAG
CTCTGTGCTGCAGATATCACCTTCATTACTGTGAAATGAAAACGACGCCCTGGGAGCACG
GCACGGAGCTCCAGTAACTAGATAGACAATCAGGACGCCAGGATGCTTGAATCCCAGATC
TATGCAGCAGATGCAGAGGACGGCAAATAATGCAATTTGGAAATCCTCCGTGTTCCCTTT
GAGTTTCTTGGACTGGAATCCCTCTTATCAGTTAGTGAGAACCCTTGGTATCTATCAGGT
GTTACCGGGGTCTGTAAGTCCAGGGGTTCTGTCAACTCGGAACCTTAATTCAGGAAAGAG
TAATGCTGGGGTTGAGAGCCGAGTGTTCCATTTCATGTGATGGTTTTCATGGGTGTCAGT
CAGGCATCAGCAGAGTCTTCGCAGGGTGTAGCAGAAGACTCGACCCCCTTCTTCATTTCT
ACACATTTTTCTTTGATAAAGTGCCTAAATTTGTGGTGGTTTTGTATGGTACTAACACGA
CACCTACCTGTTACCGTCTGGTTTGGCTGTTCCTGTGTCAGAGTTGACTCTGAGTGAGAG
GGGCCAAATTTTCCCCCCCCCCTTATTTTTAAGAACTAAAATTATTTG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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CTCGCTACCCGGCGCTGCGCGGCGAAGATGGCGGCCTCCGCCTGGGCGCGCACCGCCGTG
GTCCTTCTCTGTGTCTCTGATCTGCTGCTTCTCGTGCTGCTGCCGCCAAGGGCGTTCGCC
GCTGAGGGCCCAGCCAAAACGCCCAGCGAGGCTACTCCACCTCCCCGGAAGAAGAAGAAG
GATATTCGCGACTACAATGATGCGGACATGGCTCGTCTTCTGGAACAGTGGGAGAAAGAT
GACGACATAGAAGAAGGAGACCTCCCAGAGCACAAGAGGCCCTCCGCGCCTATCGACTTC
TCACAGATAGACCCGGGCAAGCCCGAGAGCATACTGAAAATGACGAAGAAAGGCAAGACG
CTTATGATGTTTGTCACTGTATCCGGAAACCCCACTGAGAAGGAGACGGAGGAAATCACA
AGCCTCTGGCAGGGCAGTCTTTTCAACGCCAACTATGACGTCCAAAGGTTCATCGTGGGA
TCAGACCGGGCCATCTTCATGCTGCGTGACGGGAGCTACGCCTGGGAGATCAAGGACTTT
TTGGTCAGTCAAGACAGGTGTGCCGATGTCACGCTGGAGGGACAGGTATACCCCGGGAAA
GGAGGCGGAAGCAAAGAGAAAAATAAAACCAAGCAAGAGAAGGGCAAAAAGAAGAAGGAG
GGAGACTCCAAATCTCGGGCTTCGAAGGACGACAACCGAGCTGGGAGTCAAAGACAAGAG
CTGTAGCGGGGCCGCTGCCACGGGCTCTGCACAGGAGCGGGCACAGGGACAGGGCGGCCG
TGGGGCACCACACACTGATGGACTTGTAGTTTCTGCTGGAAAAGCTCTGCCACATGACCA
GTTGGTGGTCCGTATGAGAATTCCTGTCTAAAAGTCTTCGAGAAAGAAAACATTGGCTTT
GTAATTAACATGGGACACTGACAAATGCACGTTTACTCTCAGATCACTTAGATGGAAACC
GGCGGTGTTGCTTTTTCCTTAAATATAGGGGAGTTGCTGGCTGGGTGGTGCCATCACCCC
GCTGGCCATACCTGCTCTGATCCGGCCCCCTGCTGTGTCTGTGCTGTTTACTTCTGTTAG
CTGAAAGGACACCAGGTTCTTAACCAGACAAACTGAAGACTCTTGACGTGATTGCATCAG
CTCTGTGCTGCAGATATCACCTTCATTACTGTGAAATGAAAACGACGCCCTGGGAGCACG
GCACGGAGCTCCAGTAACTAGATAGACAATCAGGACGCCAGGATGCTTGAATCCCAGATC
TATGCAGCAGATGCAGAGGACGGCAAATAATGCAATTTGGAAATCCTCCGTGTTCCCTTT
GAGTTTCTTGGACTGGAATCCCTCTTATCAGTTAGTGAGAACCCTTGGTATCTATCAGGT
GTTACCGGGGTCTGTAAGTCCAGGGGTTCTGTCAACTCGGAACCTTAATTCAGGAAAGAG
TAATGCTGGGGTTGAGAGCCGAGTGTTCCATTTCATGTGATGGTTTTCATGGGTGTCAGT
CAGGCATCAGCAGAGTCTTCGCAGGGTGTAGCAGAAGACTCGACCCCCTTCTTCATTTCT
ACACATTTTTCTTTGATAAAGTGCCTAAATTTGTGGTGGTTTTGTATGGTACTAACACGA
CACCTACCTGTTACCGTCTGGTTTGGCTGTTCCTGTGTCAGAGTTGACTCTGAGTGAGAG
GGGCCAAATTTTCCCCCCCCCCTTATTTTTAAGAACTAAAATTATTTG
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10-234, gnl|bosTau2|chr21 (19286224-19286000) |
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10-234, gnl|Hg17|chr15 (79069205-79068975) |
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10-234, gnl|Mm7|chr7 (79813845-79814055) |
| |
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466-1520, gnl|bosTau2|chr21 (19279026-19278021) |
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466-1520, gnl|Hg17|chr15 (79058876-79057811) |
| |
|
1557-1728, gnl|bosTau2|chr21 (19278023-19277851) |
|
1557-1728, gnl|canFam2|chr3 (59572317-59572005) |
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1557-1728, gnl|dasNov1|scaffold_197925 (720-1022) |
|
1557-1728, gnl|hg17|chr15 (79057547-79057869) |
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1557-1728, gnl|Hg17|chr15 (79057813-79057648) |
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1557-1728, gnl|loxAfr1|scaffold_4640 (77642-77311) |
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1557-1728, gnl|mm7|chr7 (79820680-79820375) |
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1557-1728, gnl|Mm7|chr7 (79820421-79820580) |
|
1557-1728, gnl|monDom2|scaffold_45 (6035688-6035376) |
|
1557-1728, gnl|oryCun1|scaffold_190343 (8882-8561) |
|
1557-1728, gnl|panTro1|chr16 (79780861-79781180) |
|
1557-1728, gnl|rn3|chr1 (140251853-140251550) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
10-234, gnl|bosTau2|chr21 (19286224-19286000) |
|
10-234, gnl|Hg17|chr15 (79069205-79068975) |
|
10-234, gnl|Mm7|chr7 (79813845-79814055) |
| |
|
466-1520, gnl|bosTau2|chr21 (19279026-19278021) |
|
466-1520, gnl|Hg17|chr15 (79058876-79057811) |
| |
|
1557-1728, gnl|bosTau2|chr21 (19278023-19277851) |
|
1557-1728, gnl|canFam2|chr3 (59572317-59572005) |
|
1557-1728, gnl|dasNov1|scaffold_197925 (720-1022) |
|
1557-1728, gnl|hg17|chr15 (79057547-79057869) |
|
1557-1728, gnl|Hg17|chr15 (79057813-79057648) |
|
1557-1728, gnl|loxAfr1|scaffold_4640 (77642-77311) |
|
1557-1728, gnl|mm7|chr7 (79820680-79820375) |
|
1557-1728, gnl|Mm7|chr7 (79820421-79820580) |
|
1557-1728, gnl|monDom2|scaffold_45 (6035688-6035376) |
|
1557-1728, gnl|oryCun1|scaffold_190343 (8882-8561) |
|
1557-1728, gnl|panTro1|chr16 (79780861-79781180) |
|
1557-1728, gnl|rn3|chr1 (140251853-140251550) |
|
clu (1.3161) |
|
pro (0.512033) |
|
pgl (0.473934) |
|
jca (0.45584) |
|
csp (0.322373) |
|
nca (0.273748) |
|
ute (0.265569) |
|
cov (0.264306) |
|
bla (0.248694) |
|
cty (0.20816) |
|
sag (0.182715) |
|
sto (0.179824) |
|
ton (0.1755) |
|
eye (0.170503) |
|
cli (0.152812) |
|
eli (0.151814) |
|
lun (0.150489) |
|
spl (0.143184) |
|
pla (0.133672) |
|
med (0.116252) |
|
nbm (0.0993246) |
|
ldo (0.0970026) |
|
clu (1.3161) |
|
pro (0.512033) |
|
pgl (0.473934) |
|
jca (0.45584) |
|
csp (0.322373) |
|
nca (0.273748) |
|
ute (0.265569) |
|
cov (0.264306) |
|
bla (0.248694) |
|
cty (0.20816) |
|
sag (0.182715) |
|
sto (0.179824) |
|
ton (0.1755) |
|
eye (0.170503) |
|
cli (0.152812) |
|
eli (0.151814) |
|
lun (0.150489) |
|
spl (0.143184) |
|
pla (0.133672) |
|
med (0.116252) |
|
nbm (0.0993246) |
|
ldo (0.0970026) |
