Ss1.1-Pig4-TMW8048M12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGAGTTTAACCAGTAATGCCGTTTGGTTGCCAATATCAAGCAAAGCAAACAAAAGCCA GTTTTCATCTGCTTTTTAAGAAAAGTGGTAGTCCTTTTCGCAGTGCCTGACCTGACCATA TCCGAGTGTGAGGCGCAGGCTCACAGAATCAGGGAATCATCATGAAGTTGTATGTGTTTC TGGTTAACACTGGGACCACCCTGACATTTGACACTGAACTTACAGTGCAAACTGTGGCGG ACCTCAAGCATGCCATCCATAGCAAGTACAAGATTGCGGCCCAGCACCAGGTGCTCGTGG TCAACGGAGGGGAGTGCATGGCTGCCGATCGGAGGGTGTGCACCTACAGCGCTGGGACGG ATACAAATCCAATTTTTCTTTTTAACAAAGAAATGATCTTATCTGAACGTCTACCTGCTA TTCCTAAAACTACCTTTTCAACAGAAAATGACATGGAAATAAAAGTTGAAGAGTCCCTTA TGATGCCTGCAGTTTTTCACACTGTCGCTTCAAGGACACAACTTGCAGTGGAAATGTATG AAGTTGCCAAGAAACTTTGCTCTTTCTGTGAAGGTCTGGTCCATGATGAACATCTTCAAC ATCAAGGCTGGGCTGCAATCATGGCCAATCTGGAGGATTGCTCAAATTCATACCAAAAGC TGCTTTTCAAATTTGAAAGTATTTATTCAAATTATCTGCAGTCTGTAGAAGACATCAAGT TGAAACTTACTCATTTAGGAACTGCAGTTTCAGTGATGGCCAAGATTCCGCTGTTGGAGT GCCTGACCAGACACAGCTATAGAGAGTGTTTGGGAAGATTGGATTCCCTGCCTGAACACG AAGGCTCAGAAGAGGCGGAGACGAAGACTTCCGCTGACCTGGTGCTGTCTCCTGAGATGC CTGCAACACCGATCAAACCCTTGTCAACCTCGTGTCTGAAGGCAGCGGAACATGTAGCCC CAGAAGCCACGGATGCTGAAAGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGAGTTTAACCAGTAATGCCGTTTGGTTGCCAATATCAAGCAAAGCAAACAAAAGCCA GTTTTCATCTGCTTTTTAAGAAAAGTGGTAGTCCTTTTCGCAGTGCCTGACCTGACCATA TCCGAGTGTGAGGCGCAGGCTCACAGAATCAGGGAATCATCATGAAGTTGTATGTGTTTC TGGTTAACACTGGGACCACCCTGACATTTGACACTGAACTTACAGTGCAAACTGTGGCGG ACCTCAAGCATGCCATCCATAGCAAGTACAAGATTGCGGCCCAGCACCAGGTGCTCGTGG TCAACGGAGGGGAGTGCATGGCTGCCGATCGGAGGGTGTGCACCTACAGCGCTGGGACGG ATACAAATCCAATTTTTCTTTTTAACAAAGAAATGATCTTATCTGAACGTCTACCTGCTA TTCCTAAAACTACCTTTTCAACAGAAAATGACATGGAAATAAAAGTTGAAGAGTCCCTTA TGATGCCTGCAGTTTTTCACACTGTCGCTTCAAGGACACAACTTGCAGTGGAAATGTATG AAGTTGCCAAGAAACTTTGCTCTTTCTGTGAAGGTCTGGTCCATGATGAACATCTTCAAC ATCAAGGCTGGGCTGCAATCATGGCCAATCTGGAGGATTGCTCAAATTCATACCAAAAGC TGCTTTTCAAATTTGAAAGTATTTATTCAAATTATCTGCAGTCTGTAGAAGACATCAAGT TGAAACTTACTCATTTAGGAACTGCAGTTTCAGTGATGGCCAAGATTCCGCTGTTGGAGT GCCTGACCAGACACAGCTATAGAGAGTGTTTGGGAAGATTGGATTCCCTGCCTGAACACG AAGGCTCAGAAGAGGCGGAGACGAAGACTTCCGCTGACCTGGTGCTGTCTCCTGAGATGC CTGCAACACCGATCAAACCCTTGTCAACCTCGTGTCTGAAGGCAGCGGAACATGTAGCCC CAGAAGCCACGGATGCTGAAAGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 734-892, + strand, RNAz p=0.824684 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 734-892, + strand, RNAz p=0.824684 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 5-109, gnl|bosTau2|chr14 (10760883-10760988) | |
| 5-109, gnl|canFam2|chr29 (7523292-7523531) | |
| 5-109, gnl|dasNov1|scaffold_298699 (1039-805) | |
| 5-109, gnl|galGal2|chr2 (109163400-109163638) | |
| 5-109, gnl|hg17|chr8 (53761908-53762143) | |
| 5-109, gnl|Hg17|chr8 (53762082-53761969) | |
| 5-109, gnl|loxAfr1|scaffold_11110 (24345-24100) | |
| 5-109, gnl|mm7|chr1 (6229070-6228838) | |
| 5-109, gnl|Mm7|chr1 (6228904-6229012) | |
| 5-109, gnl|monDom2|scaffold_4 (112025392-112025158) | |
| 5-109, gnl|oryCun1|scaffold_206915 (11076-10843) | |
| 5-109, gnl|panTro1|chr7 (55392684-55392919) | |
| 5-109, gnl|rheMac2|chr8 (55260018-55260253) | |
| 5-109, gnl|rn3|chr5 (13344163-13344391) | |
| 230-360, gnl|bosTau2|chr14 (10762946-10763076) | |
| 230-360, gnl|canFam2|chr29 (7520771-7520911) | |
| 230-360, gnl|danRer3|chrNA (11994280-11994142) | |
| 230-360, gnl|dasNov1|scaffold_91990 (3882-3742) | |
| 230-360, gnl|fr1|chrUn (61471323-61471461) | |
| 230-360, gnl|galGal2|chr2 (109158837-109158977) | |
| 230-360, gnl|hg17|chr8 (53758993-53759133) | |
| 230-360, gnl|Hg17|chr8 (53759129-53758999) | |
| 230-360, gnl|loxAfr1|scaffold_11110 (32882-32742) | |
| 230-360, gnl|mm7|chr1 (6235062-6234922) | |
| 230-360, gnl|Mm7|chr1 (6234924-6235054) | |
| 230-360, gnl|monDom2|scaffold_4 (112028820-112028680) | |
| 230-360, gnl|oryCun1|scaffold_206915 (17626-17475) | |
| 230-360, gnl|panTro1|chr7 (55389725-55389865) | |
| 230-360, gnl|rheMac2|chr8 (55257101-55257242) | |
| 230-360, gnl|rn3|chr5 (13338425-13338565) | |
| 230-360, gnl|tetNig1|chr15_random (771881-772017) | |
| 230-360, gnl|xenTro1|scaffold_8 (1455692-1455831) | |
| 530-733, gnl|bosTau2|chr14 (10765667-10765870) | |
| 530-733, gnl|canFam2|chr29 (7506450-7506685) | |
| 530-733, gnl|danRer3|chrNA (11996770-11996545) | |
| 530-733, gnl|dasNov1|scaffold_108329 (542-310) | |
| 530-733, gnl|echTel1|scaffold_168676 (5018-4786) | |
| 530-733, gnl|fr1|chrUn (61470797-61471024) | |
| 530-733, gnl|galGal2|chr2 (109147959-109148200) | |
| 530-733, gnl|hg17|chr8 (53751474-53751712) | |
| 530-733, gnl|Hg17|chr8 (53751685-53751482) | |
| 530-733, gnl|loxAfr1|scaffold_122752 (3720-3952) | |
| 530-733, gnl|mm7|chr1 (6239440-6239206) | |
| 530-733, gnl|Mm7|chr1 (6239227-6239430) | |
| 530-733, gnl|monDom2|scaffold_4 (112032313-112032075) | |
| 530-733, gnl|oryCun1|scaffold_119630 (233-4) | |
| 530-733, gnl|panTro1|chr7 (55382189-55382427) | |
| 530-733, gnl|rheMac2|chr8 (55247779-55248017) | |
| 530-733, gnl|rn3|chr5 (13334492-13334719) | |
| 530-733, gnl|tetNig1|chr15_random (771343-771556) | |
| 530-733, gnl|xenTro1|scaffold_8 (1446229-1446455) | |
| 734-982, gnl|bosTau2|chr14 (10767247-10767495) | |
| 734-982, gnl|Hg17|chr8 (53749387-53749139) | |
| 734-982, gnl|Mm7|chr1 (6240918-6241166) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-109, gnl|bosTau2|chr14 (10760883-10760988) | |
| 5-109, gnl|canFam2|chr29 (7523292-7523531) | |
| 5-109, gnl|dasNov1|scaffold_298699 (1039-805) | |
| 5-109, gnl|galGal2|chr2 (109163400-109163638) | |
| 5-109, gnl|hg17|chr8 (53761908-53762143) | |
| 5-109, gnl|Hg17|chr8 (53762082-53761969) | |
| 5-109, gnl|loxAfr1|scaffold_11110 (24345-24100) | |
| 5-109, gnl|mm7|chr1 (6229070-6228838) | |
| 5-109, gnl|Mm7|chr1 (6228904-6229012) | |
| 5-109, gnl|monDom2|scaffold_4 (112025392-112025158) | |
| 5-109, gnl|oryCun1|scaffold_206915 (11076-10843) | |
| 5-109, gnl|panTro1|chr7 (55392684-55392919) | |
| 5-109, gnl|rheMac2|chr8 (55260018-55260253) | |
| 5-109, gnl|rn3|chr5 (13344163-13344391) | |
| 230-360, gnl|bosTau2|chr14 (10762946-10763076) | |
| 230-360, gnl|canFam2|chr29 (7520771-7520911) | |
| 230-360, gnl|danRer3|chrNA (11994280-11994142) | |
| 230-360, gnl|dasNov1|scaffold_91990 (3882-3742) | |
| 230-360, gnl|fr1|chrUn (61471323-61471461) | |
| 230-360, gnl|galGal2|chr2 (109158837-109158977) | |
| 230-360, gnl|hg17|chr8 (53758993-53759133) | |
| 230-360, gnl|Hg17|chr8 (53759129-53758999) | |
| 230-360, gnl|loxAfr1|scaffold_11110 (32882-32742) | |
| 230-360, gnl|mm7|chr1 (6235062-6234922) | |
| 230-360, gnl|Mm7|chr1 (6234924-6235054) | |
| 230-360, gnl|monDom2|scaffold_4 (112028820-112028680) | |
| 230-360, gnl|oryCun1|scaffold_206915 (17626-17475) | |
| 230-360, gnl|panTro1|chr7 (55389725-55389865) | |
| 230-360, gnl|rheMac2|chr8 (55257101-55257242) | |
| 230-360, gnl|rn3|chr5 (13338425-13338565) | |
| 230-360, gnl|tetNig1|chr15_random (771881-772017) | |
| 230-360, gnl|xenTro1|scaffold_8 (1455692-1455831) | |
| 530-733, gnl|bosTau2|chr14 (10765667-10765870) | |
| 530-733, gnl|canFam2|chr29 (7506450-7506685) | |
| 530-733, gnl|danRer3|chrNA (11996770-11996545) | |
| 530-733, gnl|dasNov1|scaffold_108329 (542-310) | |
| 530-733, gnl|echTel1|scaffold_168676 (5018-4786) | |
| 530-733, gnl|fr1|chrUn (61470797-61471024) | |
| 530-733, gnl|galGal2|chr2 (109147959-109148200) | |
| 530-733, gnl|hg17|chr8 (53751474-53751712) | |
| 530-733, gnl|Hg17|chr8 (53751685-53751482) | |
| 530-733, gnl|loxAfr1|scaffold_122752 (3720-3952) | |
| 530-733, gnl|mm7|chr1 (6239440-6239206) | |
| 530-733, gnl|Mm7|chr1 (6239227-6239430) | |
| 530-733, gnl|monDom2|scaffold_4 (112032313-112032075) | |
| 530-733, gnl|oryCun1|scaffold_119630 (233-4) | |
| 530-733, gnl|panTro1|chr7 (55382189-55382427) | |
| 530-733, gnl|rheMac2|chr8 (55247779-55248017) | |
| 530-733, gnl|rn3|chr5 (13334492-13334719) | |
| 530-733, gnl|tetNig1|chr15_random (771343-771556) | |
| 530-733, gnl|xenTro1|scaffold_8 (1446229-1446455) | |
| 734-982, gnl|bosTau2|chr14 (10767247-10767495) | |
| 734-982, gnl|Hg17|chr8 (53749387-53749139) | |
| 734-982, gnl|Mm7|chr1 (6240918-6241166) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ldo (0.0970026) |