Ss1.1-Pig4-TMW8048M14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGACTGTTCAAGTACAATCATGCTGGACAATATAGTGAGGAAGGATGCTAGTGTAGACC ATGGCCAGCCCAGACCACCCTCCAACAGGACCGTCCAGTCACCAAATTCATCAGTGCCAT CTCCAGGCCTTGCAGGACCTGTTACCATGACAGGTGTACACCCACCAATACGTTCACCGA GTGCCTCCAGTGTTGGGAGCCGAGGAAGCTCTGGCTCTTCCAGCAAACCAACAGGAGCTG ATTCTACACACAAAGTCCCAGTGGTCATGTTGGAGCCAATCCGAATAAAACAAGAAAACA GTGGACCACCTGAAAATTATGATTTTCCTGTTGTTATAGTGAAGCAAGAATCAGATGAAG AATCTAGGCCTCAAAATACCAACTATCCAAGAAGCATACTTACGTCCCTGCTCTTGAATA GCAGTCAGAGCTCTGCTTCTGAGGAGTCTGTGCTAAGATCAGACGCCCCTGATAGCACAG GAGATCAACCTGGGCTTCACCAGGAAACTTCCTCCACTGGCAAGTCAGAGTGGCTGGATG CCTCCCAGAAGTCCCCCCTTCTTGTTGGAGAGACAAGGAAAGAGGACGACCCCAATGAGG ACTGGTGTGCAGTGTGTCAGAACGGAGGGGAACTCCTGTGCTGTGAGAAGTGTCCCAAAG TATTCCACCTGTCTTGTCACGTGCCCACGCTGGCAAATTTTCCGAGTGGAGAGTGGATTT GCACTTTCTGCCGAGACTTATCCAAACCAGAAGTTGAGTATGATTGTGATGCTCCCAGTC ACAACTCAGAAAAAAAGAAAACTGAAGGCCTTGTTAAACTAACACCAATAGATAAAAGGA AGTGTGAACGTCTACTTCTGTTTCTTTACTGCCATGAAATGAGCCTGGCTTTTCAAGACC CAGTTCCTCTAACTGTGCCTGATTATTATAAAATAATTAAAAACCCAATGGACTTGTCAA CCATCAAGAAAAGACTACAGGAAGATTATTCCATGTATACAAAGCCTGAAGATTTTGTAG CTGATTTTAGATTGATCTTTCAAAACTGTGCCGAATTCAATGAGCCTGATTCAGAAGTAG CCAATGCCGGTATAAAACTTGAAAGCTATTTTGAAGAACTTCTGAAGAACCTTTACCCGG AAAAAAAGTTTCCCAAACTAGAATTCAGGAATGAATCAGAAGATAATAAATTTAGTGACG ACTCAGATGATGACTTTGTACAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGACTGTTCAAGTACAATCATGCTGGACAATATAGTGAGGAAGGATGCTAGTGTAGACC ATGGCCAGCCCAGACCACCCTCCAACAGGACCGTCCAGTCACCAAATTCATCAGTGCCAT CTCCAGGCCTTGCAGGACCTGTTACCATGACAGGTGTACACCCACCAATACGTTCACCGA GTGCCTCCAGTGTTGGGAGCCGAGGAAGCTCTGGCTCTTCCAGCAAACCAACAGGAGCTG ATTCTACACACAAAGTCCCAGTGGTCATGTTGGAGCCAATCCGAATAAAACAAGAAAACA GTGGACCACCTGAAAATTATGATTTTCCTGTTGTTATAGTGAAGCAAGAATCAGATGAAG AATCTAGGCCTCAAAATACCAACTATCCAAGAAGCATACTTACGTCCCTGCTCTTGAATA GCAGTCAGAGCTCTGCTTCTGAGGAGTCTGTGCTAAGATCAGACGCCCCTGATAGCACAG GAGATCAACCTGGGCTTCACCAGGAAACTTCCTCCACTGGCAAGTCAGAGTGGCTGGATG CCTCCCAGAAGTCCCCCCTTCTTGTTGGAGAGACAAGGAAAGAGGACGACCCCAATGAGG ACTGGTGTGCAGTGTGTCAGAACGGAGGGGAACTCCTGTGCTGTGAGAAGTGTCCCAAAG TATTCCACCTGTCTTGTCACGTGCCCACGCTGGCAAATTTTCCGAGTGGAGAGTGGATTT GCACTTTCTGCCGAGACTTATCCAAACCAGAAGTTGAGTATGATTGTGATGCTCCCAGTC ACAACTCAGAAAAAAAGAAAACTGAAGGCCTTGTTAAACTAACACCAATAGATAAAAGGA AGTGTGAACGTCTACTTCTGTTTCTTTACTGCCATGAAATGAGCCTGGCTTTTCAAGACC CAGTTCCTCTAACTGTGCCTGATTATTATAAAATAATTAAAAACCCAATGGACTTGTCAA CCATCAAGAAAAGACTACAGGAAGATTATTCCATGTATACAAAGCCTGAAGATTTTGTAG CTGATTTTAGATTGATCTTTCAAAACTGTGCCGAATTCAATGAGCCTGATTCAGAAGTAG CCAATGCCGGTATAAAACTTGAAAGCTATTTTGAAGAACTTCTGAAGAACCTTTACCCGG AAAAAAAGTTTCCCAAACTAGAATTCAGGAATGAATCAGAAGATAATAAATTTAGTGACG ACTCAGATGATGACTTTGTACAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 260-1174, + strand, RNAz p=0.980401 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 260-1174, + strand, RNAz p=0.980401 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 1-136, gnl|bosTau2|chr4 (60302070-60301935) | |
| 1-136, gnl|canFam2|chrUn (40383650-40383807) | |
| 1-136, gnl|dasNov1|scaffold_15846 (7582-7450) | |
| 1-136, gnl|echTel1|scaffold_174706 (6977-6817) | |
| 1-136, gnl|galGal2|chr1 (53078047-53077897) | |
| 1-136, gnl|hg17|chr7 (137715492-137715652) | |
| 1-136, gnl|Hg17|chr7 (137715508-137715643) | |
| 1-136, gnl|loxAfr1|scaffold_26888 (34372-34212) | |
| 1-136, gnl|mm7|chr6 (37884405-37884565) | |
| 1-136, gnl|Mm7|chr6 (37884421-37884556) | |
| 1-136, gnl|monDom2|scaffold_22 (3948682-3948524) | |
| 1-136, gnl|oryCun1|scaffold_180466 (68118-68278) | |
| 1-136, gnl|panTro1|chr6 (140470429-140470589) | |
| 1-136, gnl|rheMac2|chr3 (176066609-176066769) | |
| 1-136, gnl|rn3|chr4 (65778886-65779046) | |
| 1-136, gnl|xenTro1|scaffold_332 (1152944-1153088) | |
| 207-377, gnl|bosTau2|chr4 (60298047-60297877) | |
| 207-377, gnl|canFam2|chrUn (40385654-40385826) | |
| 207-377, gnl|dasNov1|scaffold_15846 (7375-7203) | |
| 207-377, gnl|echTel1|scaffold_174706 (824-652) | |
| 207-377, gnl|galGal2|chr1 (53074814-53074642) | |
| 207-377, gnl|hg17|chr7 (137719419-137719591) | |
| 207-377, gnl|Hg17|chr7 (137719418-137719588) | |
| 207-377, gnl|loxAfr1|scaffold_26888 (29770-29595) | |
| 207-377, gnl|mm7|chr6 (37887929-37888101) | |
| 207-377, gnl|Mm7|chr6 (37887928-37888098) | |
| 207-377, gnl|monDom2|scaffold_22 (3944266-3944094) | |
| 207-377, gnl|oryCun1|scaffold_180466 (71239-71411) | |
| 207-377, gnl|panTro1|chr6 (140474361-140474533) | |
| 207-377, gnl|rheMac2|chr3 (176070877-176071049) | |
| 207-377, gnl|rn3|chr4 (65782933-65783105) | |
| 207-377, gnl|xenTro1|scaffold_332 (1154090-1154262) | |
| 378-722, gnl|bosTau2|chr4 (60294818-60294474) | |
| 378-722, gnl|Hg17|chr7 (137721204-137721546) | |
| 378-722, gnl|Mm7|chr6 (37888435-37888771) | |
| 1056-1224, gnl|bosTau2|chr4 (60287632-60287465) | |
| 1056-1224, gnl|canFam2|chr17 (55194037-55193919) | |
| 1056-1224, gnl|danRer3|chr8 (3587975-3588091) | |
| 1056-1224, gnl|dasNov1|scaffold_11884 (42425-42310) | |
| 1056-1224, gnl|echTel1|scaffold_229453 (195-292) | |
| 1056-1224, gnl|fr1|chrUn (103380620-103380731) | |
| 1056-1224, gnl|galGal2|chr1 (53067596-53067483) | |
| 1056-1224, gnl|hg17|chr7 (137726722-137726837) | |
| 1056-1224, gnl|Hg17|chr7 (137726734-137726901) | |
| 1056-1224, gnl|loxAfr1|scaffold_23802 (24203-24089) | |
| 1056-1224, gnl|mm7|chr6 (37896407-37896522) | |
| 1056-1224, gnl|Mm7|chr6 (37896419-37896586) | |
| 1056-1224, gnl|monDom2|scaffold_22 (3932956-3932841) | |
| 1056-1224, gnl|oryCun1|scaffold_173008 (19288-19400) | |
| 1056-1224, gnl|panTro1|chr6 (140481975-140482090) | |
| 1056-1224, gnl|rheMac2|chr3 (176077700-176077815) | |
| 1056-1224, gnl|rn3|chr4 (65793060-65793175) | |
| 1056-1224, gnl|tetNig1|chr13 (11519943-11519832) | |
| 1056-1224, gnl|xenTro1|scaffold_332 (1156769-1156884) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-136, gnl|bosTau2|chr4 (60302070-60301935) | |
| 1-136, gnl|canFam2|chrUn (40383650-40383807) | |
| 1-136, gnl|dasNov1|scaffold_15846 (7582-7450) | |
| 1-136, gnl|echTel1|scaffold_174706 (6977-6817) | |
| 1-136, gnl|galGal2|chr1 (53078047-53077897) | |
| 1-136, gnl|hg17|chr7 (137715492-137715652) | |
| 1-136, gnl|Hg17|chr7 (137715508-137715643) | |
| 1-136, gnl|loxAfr1|scaffold_26888 (34372-34212) | |
| 1-136, gnl|mm7|chr6 (37884405-37884565) | |
| 1-136, gnl|Mm7|chr6 (37884421-37884556) | |
| 1-136, gnl|monDom2|scaffold_22 (3948682-3948524) | |
| 1-136, gnl|oryCun1|scaffold_180466 (68118-68278) | |
| 1-136, gnl|panTro1|chr6 (140470429-140470589) | |
| 1-136, gnl|rheMac2|chr3 (176066609-176066769) | |
| 1-136, gnl|rn3|chr4 (65778886-65779046) | |
| 1-136, gnl|xenTro1|scaffold_332 (1152944-1153088) | |
| 207-377, gnl|bosTau2|chr4 (60298047-60297877) | |
| 207-377, gnl|canFam2|chrUn (40385654-40385826) | |
| 207-377, gnl|dasNov1|scaffold_15846 (7375-7203) | |
| 207-377, gnl|echTel1|scaffold_174706 (824-652) | |
| 207-377, gnl|galGal2|chr1 (53074814-53074642) | |
| 207-377, gnl|hg17|chr7 (137719419-137719591) | |
| 207-377, gnl|Hg17|chr7 (137719418-137719588) | |
| 207-377, gnl|loxAfr1|scaffold_26888 (29770-29595) | |
| 207-377, gnl|mm7|chr6 (37887929-37888101) | |
| 207-377, gnl|Mm7|chr6 (37887928-37888098) | |
| 207-377, gnl|monDom2|scaffold_22 (3944266-3944094) | |
| 207-377, gnl|oryCun1|scaffold_180466 (71239-71411) | |
| 207-377, gnl|panTro1|chr6 (140474361-140474533) | |
| 207-377, gnl|rheMac2|chr3 (176070877-176071049) | |
| 207-377, gnl|rn3|chr4 (65782933-65783105) | |
| 207-377, gnl|xenTro1|scaffold_332 (1154090-1154262) | |
| 378-722, gnl|bosTau2|chr4 (60294818-60294474) | |
| 378-722, gnl|Hg17|chr7 (137721204-137721546) | |
| 378-722, gnl|Mm7|chr6 (37888435-37888771) | |
| 1056-1224, gnl|bosTau2|chr4 (60287632-60287465) | |
| 1056-1224, gnl|canFam2|chr17 (55194037-55193919) | |
| 1056-1224, gnl|danRer3|chr8 (3587975-3588091) | |
| 1056-1224, gnl|dasNov1|scaffold_11884 (42425-42310) | |
| 1056-1224, gnl|echTel1|scaffold_229453 (195-292) | |
| 1056-1224, gnl|fr1|chrUn (103380620-103380731) | |
| 1056-1224, gnl|galGal2|chr1 (53067596-53067483) | |
| 1056-1224, gnl|hg17|chr7 (137726722-137726837) | |
| 1056-1224, gnl|Hg17|chr7 (137726734-137726901) | |
| 1056-1224, gnl|loxAfr1|scaffold_23802 (24203-24089) | |
| 1056-1224, gnl|mm7|chr6 (37896407-37896522) | |
| 1056-1224, gnl|Mm7|chr6 (37896419-37896586) | |
| 1056-1224, gnl|monDom2|scaffold_22 (3932956-3932841) | |
| 1056-1224, gnl|oryCun1|scaffold_173008 (19288-19400) | |
| 1056-1224, gnl|panTro1|chr6 (140481975-140482090) | |
| 1056-1224, gnl|rheMac2|chr3 (176077700-176077815) | |
| 1056-1224, gnl|rn3|chr4 (65793060-65793175) | |
| 1056-1224, gnl|tetNig1|chr13 (11519943-11519832) | |
| 1056-1224, gnl|xenTro1|scaffold_332 (1156769-1156884) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cbe (0.239234) | |
| ece (0.229305) | |
| col (0.195008) | |
| tbr (0.154178) | |
| pla (0.133672) | |
| thg (0.126791) | |
| ese (0.126502) | |
| cbl (0.114797) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.239234) | |
| ece (0.229305) | |
| col (0.195008) | |
| tbr (0.154178) | |
| pla (0.133672) | |
| thg (0.126791) | |
| ese (0.126502) | |
| cbl (0.114797) |