Ss1.1-Pig4-TMW8048M18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGAGCGCCGCGCCCCGCCTCATCTCCGCGACCCGCGAGGCCGCTCAGGTCTCTGCTGTG GCCACCTGAGCCTGCAGGATGTTTCACGGGATCCCAGCCACTCCTGGCATGGGAGCCCCT GGAAACAAGCCGGAGCTGTATGAGGAGGTGAAGCTGTACAAGAATGCCCGTGAGCGGGAG AAGTACGACAACATGGCCGAGCTGTTTGCAGTCGTGAAGACGATGCAGGCCCTGGAGAAG GCGTACATCAAGGACTGCGTCACCCCCAACGAGTACACTGCGGCCTGCTCCCGGCTCCTG GTCCAGTACAAAGCTGCCTTCCGGCAGGTTCAGGGCTCAGAAGTCAGCTCCATTGATGAA TTCTGCCGCAAGTTCCGTCTGGACTGCCCGCTCGCCATGGAGAGGATCAAGGAGGACCGG CCCATCACCATCAAGGACGACAAGGGCAACCTCAACCGCTGCATCGCTGATGTCGTCTCG CTCTTCATCACCGTGATGGACAAGCTGCGCCTGGAGATCCGCGCCATGGACGAGATCCAG CCGGACCTGCGGGAGCTGATGGAGACCATGCATCGCATGAGCCACCTGCCTCCCGACTTC GAGGGCCGCCAGACGGTCAGCCAGTGGCTGCAGACCCTGAGCGGCATGTCGGCCTCGGAC GAGCTGGACGACTCCCAGGTGCGCCAGATGCTCTTTGACCTGGAATCGGCCTACAACGCC TTCAATCGCTTCCTGCACGCCTGAGCCCAGCCTCCCTGCCCAGATGTGCAGCCAGGGCAC AGCCTTCCTTGTGGTTCCTGCTCGCCCACTGGTCATCTGTACCCTGCTGTCCACAGCAGC CCCATCTAGGTGTCTGTCCATGGTGTCTCGAACCTGGAGCCCCCTCCCCACAATAAAGAT GCTCTCTGACTCCTGCCGCTGAGGGCAGCTCTCCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGAGCGCCGCGCCCCGCCTCATCTCCGCGACCCGCGAGGCCGCTCAGGTCTCTGCTGTG GCCACCTGAGCCTGCAGGATGTTTCACGGGATCCCAGCCACTCCTGGCATGGGAGCCCCT GGAAACAAGCCGGAGCTGTATGAGGAGGTGAAGCTGTACAAGAATGCCCGTGAGCGGGAG AAGTACGACAACATGGCCGAGCTGTTTGCAGTCGTGAAGACGATGCAGGCCCTGGAGAAG GCGTACATCAAGGACTGCGTCACCCCCAACGAGTACACTGCGGCCTGCTCCCGGCTCCTG GTCCAGTACAAAGCTGCCTTCCGGCAGGTTCAGGGCTCAGAAGTCAGCTCCATTGATGAA TTCTGCCGCAAGTTCCGTCTGGACTGCCCGCTCGCCATGGAGAGGATCAAGGAGGACCGG CCCATCACCATCAAGGACGACAAGGGCAACCTCAACCGCTGCATCGCTGATGTCGTCTCG CTCTTCATCACCGTGATGGACAAGCTGCGCCTGGAGATCCGCGCCATGGACGAGATCCAG CCGGACCTGCGGGAGCTGATGGAGACCATGCATCGCATGAGCCACCTGCCTCCCGACTTC GAGGGCCGCCAGACGGTCAGCCAGTGGCTGCAGACCCTGAGCGGCATGTCGGCCTCGGAC GAGCTGGACGACTCCCAGGTGCGCCAGATGCTCTTTGACCTGGAATCGGCCTACAACGCC TTCAATCGCTTCCTGCACGCCTGAGCCCAGCCTCCCTGCCCAGATGTGCAGCCAGGGCAC AGCCTTCCTTGTGGTTCCTGCTCGCCCACTGGTCATCTGTACCCTGCTGTCCACAGCAGC CCCATCTAGGTGTCTGTCCATGGTGTCTCGAACCTGGAGCCCCCTCCCCACAATAAAGAT GCTCTCTGACTCCTGCCGCTGAGGGCAGCTCTCCCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 273-377, gnl|bosTau2|chr14 (3330078-3330182) | |
| 273-377, gnl|canFam2|chr13 (40872779-40872911) | |
| 273-377, gnl|danRer3|chr25 (2746414-2746523) | |
| 273-377, gnl|dasNov1|scaffold_219642 (4142-4016) | |
| 273-377, gnl|echTel1|scaffold_248505 (2737-2862) | |
| 273-377, gnl|fr1|chrUn (181983310-181983436) | |
| 273-377, gnl|hg17|chr8 (145621132-145621262) | |
| 273-377, gnl|Hg17|chr8 (145621242-145621138) | |
| 273-377, gnl|mm7|chr15 (76705936-76706067) | |
| 273-377, gnl|Mm7|chr15 (76706046-76705942) | |
| 273-377, gnl|monDom2|scaffold_79 (3259885-3260015) | |
| 273-377, gnl|panTro1|chr7 (148876620-148876750) | |
| 273-377, gnl|rheMac2|chr8 (147080323-147080453) | |
| 273-377, gnl|rn3|chr7 (114705993-114706124) | |
| 273-377, gnl|tetNig1|chr21 (1924020-1924133) | |
| 273-377, gnl|xenTro1|scaffold_2147 (3864-3730) | |
| 379-480, gnl|bosTau2|chr14 (3330287-3330388) | |
| 379-480, gnl|canFam2|chr13 (40872274-40872401) | |
| 379-480, gnl|danRer3|chr25 (2745156-2745264) | |
| 379-480, gnl|dasNov1|scaffold_219642 (4398-4269) | |
| 379-480, gnl|echTel1|scaffold_248505 (2540-2656) | |
| 379-480, gnl|fr1|chrUn (181983132-181983242) | |
| 379-480, gnl|hg17|chr8 (145620905-145621029) | |
| 379-480, gnl|Hg17|chr8 (145621010-145620909) | |
| 379-480, gnl|mm7|chr15 (76705719-76705844) | |
| 379-480, gnl|Mm7|chr15 (76705824-76705723) | |
| 379-480, gnl|monDom2|scaffold_79 (3259631-3259760) | |
| 379-480, gnl|panTro1|chr7 (148876393-148876517) | |
| 379-480, gnl|rheMac2|chr8 (147080094-147080219) | |
| 379-480, gnl|rn3|chr7 (114705775-114705900) | |
| 379-480, gnl|tetNig1|chr21 (1923835-1923945) | |
| 379-480, gnl|xenTro1|scaffold_2147 (4308-4193) | |
| 626-756, gnl|bosTau2|chr14 (3330911-3331041) | |
| 626-756, gnl|Hg17|chr8 (145620114-145619985) | |
| 626-756, gnl|Mm7|chr15 (76704903-76704782) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 273-377, gnl|bosTau2|chr14 (3330078-3330182) | |
| 273-377, gnl|canFam2|chr13 (40872779-40872911) | |
| 273-377, gnl|danRer3|chr25 (2746414-2746523) | |
| 273-377, gnl|dasNov1|scaffold_219642 (4142-4016) | |
| 273-377, gnl|echTel1|scaffold_248505 (2737-2862) | |
| 273-377, gnl|fr1|chrUn (181983310-181983436) | |
| 273-377, gnl|hg17|chr8 (145621132-145621262) | |
| 273-377, gnl|Hg17|chr8 (145621242-145621138) | |
| 273-377, gnl|mm7|chr15 (76705936-76706067) | |
| 273-377, gnl|Mm7|chr15 (76706046-76705942) | |
| 273-377, gnl|monDom2|scaffold_79 (3259885-3260015) | |
| 273-377, gnl|panTro1|chr7 (148876620-148876750) | |
| 273-377, gnl|rheMac2|chr8 (147080323-147080453) | |
| 273-377, gnl|rn3|chr7 (114705993-114706124) | |
| 273-377, gnl|tetNig1|chr21 (1924020-1924133) | |
| 273-377, gnl|xenTro1|scaffold_2147 (3864-3730) | |
| 379-480, gnl|bosTau2|chr14 (3330287-3330388) | |
| 379-480, gnl|canFam2|chr13 (40872274-40872401) | |
| 379-480, gnl|danRer3|chr25 (2745156-2745264) | |
| 379-480, gnl|dasNov1|scaffold_219642 (4398-4269) | |
| 379-480, gnl|echTel1|scaffold_248505 (2540-2656) | |
| 379-480, gnl|fr1|chrUn (181983132-181983242) | |
| 379-480, gnl|hg17|chr8 (145620905-145621029) | |
| 379-480, gnl|Hg17|chr8 (145621010-145620909) | |
| 379-480, gnl|mm7|chr15 (76705719-76705844) | |
| 379-480, gnl|Mm7|chr15 (76705824-76705723) | |
| 379-480, gnl|monDom2|scaffold_79 (3259631-3259760) | |
| 379-480, gnl|panTro1|chr7 (148876393-148876517) | |
| 379-480, gnl|rheMac2|chr8 (147080094-147080219) | |
| 379-480, gnl|rn3|chr7 (114705775-114705900) | |
| 379-480, gnl|tetNig1|chr21 (1923835-1923945) | |
| 379-480, gnl|xenTro1|scaffold_2147 (4308-4193) | |
| 626-756, gnl|bosTau2|chr14 (3330911-3331041) | |
| 626-756, gnl|Hg17|chr8 (145620114-145619985) | |
| 626-756, gnl|Mm7|chr15 (76704903-76704782) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| fcc (0.791139) | |
| nje (0.66368) | |
| cag (0.453583) | |
| jej (0.395687) | |
| cly (0.361925) | |
| csp (0.322373) | |
| eli (0.303628) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| thg (0.253582) | |
| jca (0.22792) | |
| mas (0.210305) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cki (0.165235) | |
| pty (0.142714) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.791139) | |
| nje (0.66368) | |
| cag (0.453583) | |
| jej (0.395687) | |
| cly (0.361925) | |
| csp (0.322373) | |
| eli (0.303628) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| thg (0.253582) | |
| jca (0.22792) | |
| mas (0.210305) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cki (0.165235) | |
| pty (0.142714) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) |