Non-Coding RNA Search

Ss1.1-Pig4-TMW8048N18.3

Sequence:


               
               CCCCTTTCAGTGTAACTTCTATGATAAGCCTCAAGTGAGTGGTTTGTGATGAAACTTACG
AAGAAAAGGCATTAAATACCTCTCTGAGTTTGGGGAGGATATCAATGTTAAAGGTATTCT
CCCAGCCCAAAAGCCAAGCCCTCAGAACTGGGAGTGTAGGCTGAGAGGAGAACCAGAGAT
TATGGGAGCCCCCAGTCTCAAATGATGATTGTAATTGCCCCATCTGTGACAGGAACCCCT
GACACCAACTGGAAAATAGTCAAAACATCAGCTGTTATGTGGGCTGGGGTGTGGGGTTCA
TCAAGTTCACTTCTTCCCCTTTGGAAGTGGCTGCATATGTGTGGAACCACTTGTACACAT
GGATGCTCACAGATAAACTTGTGTCCACTTGGAGCTGCCTCTGGCTCTGGCCATCCTGAC
CATGTCATGAGGATTCCAGTCCTCAGTGTCCCACATGTACTGTGGGGATCCACACCTTTG
ACAAGGTCAAGAGTGGCTTTTCTCCAGGAGGCAGGGGGTGGGGGGTGCGACTCTGGTGCT
GTCTGTACTCTGAGGCCTTCATGAAGCAAAAGCTCACTCCAGTGCAGAGGGAATGAAAGG
TGACAGTATACCCATGCTGTGTCCCACATGTCACTCTCCTGTGGACAGAGACACAGGAAG
GAGTTTCTGTATAAATAATTCTCATCACGGGTGTAAATAATGAGAAAGACAGTCCTTGCT
GCTCTACCATAGGGTTTTTCTTTGATGCCTAGTTATGCTGCACATGGCATTTGCCTAAAG
AACTTGGACTGAGCTTTTTAAAAAAGGACAGCTGAAGTTTTATAATCTTTAACAAAGAAA
GTGTAATAGACAGTTACACTAGTGTAGGGTATTTGGGAGATGGTTTGTTTTGGTGGGGGG
AGGAGGTTGTCACTTGTATTTATTGTGACTCTAAGTCTTTGATAATAAATGTTTGAAAAA
AAAAAAAAAAAGGTGGCCACCAAACCGGAATAGAAGTTCCAATAAACAAAGAGGCTGGAA
TCAATGGTTATACATTGTGTCATGAGGAAATTTTAGAATCTGAAGGACAATAAAGAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTTTCAGTGTAACTTCTATGATAAGCCTCAAGTGAGTGGTTTGTGATGAAACTTACG
AAGAAAAGGCATTAAATACCTCTCTGAGTTTGGGGAGGATATCAATGTTAAAGGTATTCT
CCCAGCCCAAAAGCCAAGCCCTCAGAACTGGGAGTGTAGGCTGAGAGGAGAACCAGAGAT
TATGGGAGCCCCCAGTCTCAAATGATGATTGTAATTGCCCCATCTGTGACAGGAACCCCT
GACACCAACTGGAAAATAGTCAAAACATCAGCTGTTATGTGGGCTGGGGTGTGGGGTTCA
TCAAGTTCACTTCTTCCCCTTTGGAAGTGGCTGCATATGTGTGGAACCACTTGTACACAT
GGATGCTCACAGATAAACTTGTGTCCACTTGGAGCTGCCTCTGGCTCTGGCCATCCTGAC
CATGTCATGAGGATTCCAGTCCTCAGTGTCCCACATGTACTGTGGGGATCCACACCTTTG
ACAAGGTCAAGAGTGGCTTTTCTCCAGGAGGCAGGGGGTGGGGGGTGCGACTCTGGTGCT
GTCTGTACTCTGAGGCCTTCATGAAGCAAAAGCTCACTCCAGTGCAGAGGGAATGAAAGG
TGACAGTATACCCATGCTGTGTCCCACATGTCACTCTCCTGTGGACAGAGACACAGGAAG
GAGTTTCTGTATAAATAATTCTCATCACGGGTGTAAATAATGAGAAAGACAGTCCTTGCT
GCTCTACCATAGGGTTTTTCTTTGATGCCTAGTTATGCTGCACATGGCATTTGCCTAAAG
AACTTGGACTGAGCTTTTTAAAAAAGGACAGCTGAAGTTTTATAATCTTTAACAAAGAAA
GTGTAATAGACAGTTACACTAGTGTAGGGTATTTGGGAGATGGTTTGTTTTGGTGGGGGG
AGGAGGTTGTCACTTGTATTTATTGTGACTCTAAGTCTTTGATAATAAATGTTTGAAAAA
AAAAAAAAAAAGGTGGCCACCAAACCGGAATAGAAGTTCCAATAAACAAAGAGGCTGGAA
TCAATGGTTATACATTGTGTCATGAGGAAATTTTAGAATCTGAAGGACAATAAAGAAATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               361-527, + strand, RNAz p=0.998626

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               361-527, + strand, RNAz p=0.998626

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-152, gnl|bosTau2|chr7 (3959493-3959337)
               

               
               1-152, gnl|Hg17|chr19 (19479662-19479853)
               


               
               166-527, gnl|bosTau2|chr7 (3959294-3958952)
               

               
               166-527, gnl|Hg17|chr19 (19479890-19480226)
               


               
               619-1078, gnl|bosTau2|chr7 (3958888-3958460)
               

               
               619-1078, gnl|Hg17|chr19 (19480301-19480721)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-152, gnl|bosTau2|chr7 (3959493-3959337)
               

               
               1-152, gnl|Hg17|chr19 (19479662-19479853)
               


               
               166-527, gnl|bosTau2|chr7 (3959294-3958952)
               

               
               166-527, gnl|Hg17|chr19 (19479890-19480226)
               


               
               619-1078, gnl|bosTau2|chr7 (3958888-3958460)
               

               
               619-1078, gnl|Hg17|chr19 (19480301-19480721)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cki (0.165235)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	1-152, gnl\|bosTau2\|chr7 (3959493-3959337)
	1-152, gnl\|Hg17\|chr19 (19479662-19479853)

	166-527, gnl\|bosTau2\|chr7 (3959294-3958952)
	166-527, gnl\|Hg17\|chr19 (19479890-19480226)

	619-1078, gnl\|bosTau2\|chr7 (3958888-3958460)
	619-1078, gnl\|Hg17\|chr19 (19480301-19480721)

	cki (0.165235)
	spl (0.143184)
	lyg (0.133103)
	kid (0.129735)
	bla (0.124347)
	ecc (0.115035)
	nbm (0.0993246)