Ss1.1-Pig4-TMW8048N23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGACCTGCCAGAGCAAAATTTGACTTTAAAGCTCAGACGCTAAAGGAGCTTCCGCTGCA GAAGGGAGATATTGTTTACATTTATAAGCAGATCGATCAGAACTGGTACGAAGGAGAGCA CCATGGCCGGGTGGGGATCTTCCCCCGCACCTACATCGAGCTTCTTCCCCCTGCTGAGAA GGCTCAGCCCAAAAAGCTGACACCAGTGCAGGTTCTGGAATACGGCGAAGCCATCGCCAA GTTTAACTTCAATGGTGATACGCAAGTGGAAATGTCCTTCAGAAAGGGCGAGAGGATCAC ACTGCTTCGACAGGTGGACGAGAACTGGTATGAAGGGAGGATCCCAGGGACGTCCCGGCA AGGCATCTTCCCCATCACCTATGTGGATGTGATCAAGCGGCCACTGGTGAAAAACCCCGT GGATTACATCGATCTGCCTTTCTCCTCCTCCCCAAGTCGAAGTGCCACTGCAAGCCCTCA GCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAAACCTCCCAGGATTT ATTTAGCTACCAAGCATTGTATAGCTATATACCGCAGAATGATGATGAATTGGAACTCCG AGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTGTTGGTACTTC AAGAAGGACAAGGCAGTTTGGTACTTTCCCAGGCAACTATGTGAGGCCTTTATATCTATA AGAAGACTGAAAACCACGGAGATGATCCTTTATTGGAGGATGAAGCAGAATTCATGTATT GGTCTCTTTATTTAAATGTTGAGTCAGTAGGAAAACTAATGCAGTGGATAAAGTAAGAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGACCTGCCAGAGCAAAATTTGACTTTAAAGCTCAGACGCTAAAGGAGCTTCCGCTGCA GAAGGGAGATATTGTTTACATTTATAAGCAGATCGATCAGAACTGGTACGAAGGAGAGCA CCATGGCCGGGTGGGGATCTTCCCCCGCACCTACATCGAGCTTCTTCCCCCTGCTGAGAA GGCTCAGCCCAAAAAGCTGACACCAGTGCAGGTTCTGGAATACGGCGAAGCCATCGCCAA GTTTAACTTCAATGGTGATACGCAAGTGGAAATGTCCTTCAGAAAGGGCGAGAGGATCAC ACTGCTTCGACAGGTGGACGAGAACTGGTATGAAGGGAGGATCCCAGGGACGTCCCGGCA AGGCATCTTCCCCATCACCTATGTGGATGTGATCAAGCGGCCACTGGTGAAAAACCCCGT GGATTACATCGATCTGCCTTTCTCCTCCTCCCCAAGTCGAAGTGCCACTGCAAGCCCTCA GCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAAACCTCCCAGGATTT ATTTAGCTACCAAGCATTGTATAGCTATATACCGCAGAATGATGATGAATTGGAACTCCG AGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTGTTGGTACTTC AAGAAGGACAAGGCAGTTTGGTACTTTCCCAGGCAACTATGTGAGGCCTTTATATCTATA AGAAGACTGAAAACCACGGAGATGATCCTTTATTGGAGGATGAAGCAGAATTCATGTATT GGTCTCTTTATTTAAATGTTGAGTCAGTAGGAAAACTAATGCAGTGGATAAAGTAAGAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 324-443, + strand, RNAz p=0.595221 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 324-443, + strand, RNAz p=0.595221 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC042612, + |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 57-160, gnl|bosTau2|chr26 (10866151-10866254) | |
| 57-160, gnl|Hg17|chr10 (97091414-97091311) | |
| 57-160, gnl|Mm7|chr19 (40208508-40208405) | |
| 285-492, gnl|bosTau2|chr26 (10868171-10868377) | |
| 285-492, gnl|canFam2|chr28 (11856914-11857126) | |
| 285-492, gnl|danRer3|chr19 (59843151-59843357) | |
| 285-492, gnl|dasNov1|scaffold_2309 (29231-29019) | |
| 285-492, gnl|echTel1|scaffold_318799 (95981-96195) | |
| 285-492, gnl|fr1|chrUn (241688195-241687995) | |
| 285-492, gnl|galGal2|chr6 (15668867-15668653) | |
| 285-492, gnl|hg17|chr10 (97088870-97089085) | |
| 285-492, gnl|Hg17|chr10 (97089076-97088870) | |
| 285-492, gnl|loxAfr1|scaffold_12108 (39085-39300) | |
| 285-492, gnl|mm7|chr19 (40205447-40205662) | |
| 285-492, gnl|Mm7|chr19 (40205653-40205447) | |
| 285-492, gnl|monDom2|scaffold_14 (27627740-27627524) | |
| 285-492, gnl|oryCun1|scaffold_213007 (69044-69259) | |
| 285-492, gnl|panTro1|chr8 (98726365-98726580) | |
| 285-492, gnl|rheMac2|chr9 (94873675-94873890) | |
| 285-492, gnl|rn3|chr1 (245536072-245536287) | |
| 285-492, gnl|tetNig1|chr17 (822316-822116) | |
| 285-492, gnl|xenTro1|scaffold_228 (208385-208172) | |
| 653-840, gnl|bosTau2|chr26 (10709086-10708900) | |
| 653-840, gnl|canFam2|chr28 (11835213-11835397) | |
| 653-840, gnl|echTel1|scaffold_318799 (73109-73322) | |
| 653-840, gnl|galGal2|chr6 (15680477-15680301) | |
| 653-840, gnl|hg17|chr10 (97064620-97064801) | |
| 653-840, gnl|Hg17|chr10 (97064874-97064695) | |
| 653-840, gnl|loxAfr1|scaffold_8270 (44462-44658) | |
| 653-840, gnl|mm7|chr19 (40188667-40188832) | |
| 653-840, gnl|Mm7|chr19 (40188905-40188718) | |
| 653-840, gnl|monDom2|scaffold_14 (27649209-27648959) | |
| 653-840, gnl|oryCun1|scaffold_213007 (49213-49396) | |
| 653-840, gnl|panTro1|chr8 (98702065-98702246) | |
| 653-840, gnl|rheMac2|chr9 (94848807-94848988) | |
| 653-840, gnl|rn3|chr1 (245516570-245516737) | |
| 653-840, gnl|xenTro1|scaffold_228 (221231-221045) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 57-160, gnl|bosTau2|chr26 (10866151-10866254) | |
| 57-160, gnl|Hg17|chr10 (97091414-97091311) | |
| 57-160, gnl|Mm7|chr19 (40208508-40208405) | |
| 285-492, gnl|bosTau2|chr26 (10868171-10868377) | |
| 285-492, gnl|canFam2|chr28 (11856914-11857126) | |
| 285-492, gnl|danRer3|chr19 (59843151-59843357) | |
| 285-492, gnl|dasNov1|scaffold_2309 (29231-29019) | |
| 285-492, gnl|echTel1|scaffold_318799 (95981-96195) | |
| 285-492, gnl|fr1|chrUn (241688195-241687995) | |
| 285-492, gnl|galGal2|chr6 (15668867-15668653) | |
| 285-492, gnl|hg17|chr10 (97088870-97089085) | |
| 285-492, gnl|Hg17|chr10 (97089076-97088870) | |
| 285-492, gnl|loxAfr1|scaffold_12108 (39085-39300) | |
| 285-492, gnl|mm7|chr19 (40205447-40205662) | |
| 285-492, gnl|Mm7|chr19 (40205653-40205447) | |
| 285-492, gnl|monDom2|scaffold_14 (27627740-27627524) | |
| 285-492, gnl|oryCun1|scaffold_213007 (69044-69259) | |
| 285-492, gnl|panTro1|chr8 (98726365-98726580) | |
| 285-492, gnl|rheMac2|chr9 (94873675-94873890) | |
| 285-492, gnl|rn3|chr1 (245536072-245536287) | |
| 285-492, gnl|tetNig1|chr17 (822316-822116) | |
| 285-492, gnl|xenTro1|scaffold_228 (208385-208172) | |
| 653-840, gnl|bosTau2|chr26 (10709086-10708900) | |
| 653-840, gnl|canFam2|chr28 (11835213-11835397) | |
| 653-840, gnl|echTel1|scaffold_318799 (73109-73322) | |
| 653-840, gnl|galGal2|chr6 (15680477-15680301) | |
| 653-840, gnl|hg17|chr10 (97064620-97064801) | |
| 653-840, gnl|Hg17|chr10 (97064874-97064695) | |
| 653-840, gnl|loxAfr1|scaffold_8270 (44462-44658) | |
| 653-840, gnl|mm7|chr19 (40188667-40188832) | |
| 653-840, gnl|Mm7|chr19 (40188905-40188718) | |
| 653-840, gnl|monDom2|scaffold_14 (27649209-27648959) | |
| 653-840, gnl|oryCun1|scaffold_213007 (49213-49396) | |
| 653-840, gnl|panTro1|chr8 (98702065-98702246) | |
| 653-840, gnl|rheMac2|chr9 (94848807-94848988) | |
| 653-840, gnl|rn3|chr1 (245516570-245516737) | |
| 653-840, gnl|xenTro1|scaffold_228 (221231-221045) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| duo (0.345602) | |
| ton (0.1755) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| csk (0.140746) | |
| ute (0.132784) | |
| cov (0.132153) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.345602) | |
| ton (0.1755) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| csk (0.140746) | |
| ute (0.132784) | |
| cov (0.132153) |