Ss1.1-Pig4-TMW8048O01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCAGTTGTCATTGATGAGATATTTCAAGAAAAAAAATTTAATTAAAAAAAATAAAATAC AAAAATCCAAATGTTACTGCCCTGTTGAAATGTAAGATACAGTTTCTCCTATTTCAGCCC TGCTGAATCACCTGTCCCTTCAAAATCACCTTTCACAACCCTCAGAATCTGCCTTTTTTT AATTGCCCAGGCCTCTCTGTATCCTAGAGGTAAACATGACTCATTTTCTTTTACCTAAAA TGCACTGATGTAAAAGTAGGAAAAAAGAAAACAGAACTCGAAAATCCCTTCCAAACCACC CACTGGTCCCACTCACCTACGCATAGCAGAGTCACTACTGTTAATCCCTTAATCTGATTT TGTTTGGATATTTATCTTGTACCTGCTGCTAAACACACTGCAGGAGGGACTCTGAAACCT CAAGCCACCTACTCACCTCTCTTATCTGTGTCTGTGTATTATTAAAATGTCTATTCAAAT ATCAAAAACTTTCTAACATCATGCAGCTTGTATTCAGTTTACCTAAAGGCCCCAAATACC ATGTCAGATCTCTTCTGCTAAAAGAGCTAATGAACTATGAAAACGTGAATGACATCATGT GTTTTGCTTCATTTGTTTTTATCAAATTTATAGGCCAAGTGTGATTTTAAAAACTTACAG ACACTGAATTAATCTTCCCTGCTACTTGGAAACCAGAAAATAATGACTGGTCATTCATTA TATCTTTCTTAGTTCAAAAGCACATTTTTTTACCAAATTAAATCTGATTGTATTTGAAAT GATTCAATTCATTTATGGCAGAGGAATATCAATCCTAATGACTTCTAAAAATGTAACTAA CTGAATCATTACCTTACATTTATTGTTTAATAAGCATATTTTGAAAATGTATGGCTAGAG CGTCATAATAAAATGATATATCTTTCTTTAGTAATTACATTAAAATTAATCATGTTTGAT TAATTAGTTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCAGTTGTCATTGATGAGATATTTCAAGAAAAAAAATTTAATTAAAAAAAATAAAATAC AAAAATCCAAATGTTACTGCCCTGTTGAAATGTAAGATACAGTTTCTCCTATTTCAGCCC TGCTGAATCACCTGTCCCTTCAAAATCACCTTTCACAACCCTCAGAATCTGCCTTTTTTT AATTGCCCAGGCCTCTCTGTATCCTAGAGGTAAACATGACTCATTTTCTTTTACCTAAAA TGCACTGATGTAAAAGTAGGAAAAAAGAAAACAGAACTCGAAAATCCCTTCCAAACCACC CACTGGTCCCACTCACCTACGCATAGCAGAGTCACTACTGTTAATCCCTTAATCTGATTT TGTTTGGATATTTATCTTGTACCTGCTGCTAAACACACTGCAGGAGGGACTCTGAAACCT CAAGCCACCTACTCACCTCTCTTATCTGTGTCTGTGTATTATTAAAATGTCTATTCAAAT ATCAAAAACTTTCTAACATCATGCAGCTTGTATTCAGTTTACCTAAAGGCCCCAAATACC ATGTCAGATCTCTTCTGCTAAAAGAGCTAATGAACTATGAAAACGTGAATGACATCATGT GTTTTGCTTCATTTGTTTTTATCAAATTTATAGGCCAAGTGTGATTTTAAAAACTTACAG ACACTGAATTAATCTTCCCTGCTACTTGGAAACCAGAAAATAATGACTGGTCATTCATTA TATCTTTCTTAGTTCAAAAGCACATTTTTTTACCAAATTAAATCTGATTGTATTTGAAAT GATTCAATTCATTTATGGCAGAGGAATATCAATCCTAATGACTTCTAAAAATGTAACTAA CTGAATCATTACCTTACATTTATTGTTTAATAAGCATATTTTGAAAATGTATGGCTAGAG CGTCATAATAAAATGATATATCTTTCTTTAGTAATTACATTAAAATTAATCATGTTTGAT TAATTAGTTCTT |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-194, gnl|bosTau2|chr5 (37956941-37956746) | |
| 1-194, gnl|canFam2|chr15 (44207760-44208078) | |
| 1-194, gnl|dasNov1|scaffold_256 (19316-19606) | |
| 1-194, gnl|echTel1|scaffold_316487 (74864-74544) | |
| 1-194, gnl|hg17|chr12 (101292846-101293168) | |
| 1-194, gnl|Hg17|chr12 (101293103-101292877) | |
| 1-194, gnl|loxAfr1|scaffold_116330 (1747-2079) | |
| 1-194, gnl|mm7|chr10 (87494565-87494251) | |
| 1-194, gnl|Mm7|chr10 (87494322-87494532) | |
| 1-194, gnl|monDom2|scaffold_34 (10961062-10960707) | |
| 1-194, gnl|oryCun1|scaffold_52248 (1055-1369) | |
| 1-194, gnl|panTro1|chr10_random (711981-711660) | |
| 1-194, gnl|rheMac2|chr11 (103587625-103587966) | |
| 1-194, gnl|rn3|chr7 (24630495-24630183) | |
| 238-972, gnl|bosTau2|chr5 (37956745-37956016) | |
| 238-972, gnl|canFam2|chr15 (44206865-44207713) | |
| 238-972, gnl|echTel1|scaffold_316487 (75760-74918) | |
| 238-972, gnl|hg17|chr12 (101291946-101292792) | |
| 238-972, gnl|Hg17|chr12 (101292876-101292110) | |
| 238-972, gnl|loxAfr1|scaffold_116330 (848-1693) | |
| 238-972, gnl|mm7|chr10 (87495404-87494619) | |
| 238-972, gnl|Mm7|chr10 (87494533-87495262) | |
| 238-972, gnl|monDom2|scaffold_34 (10961987-10961118) | |
| 238-972, gnl|oryCun1|scaffold_52248 (181-1005) | |
| 238-972, gnl|panTro1|chr10 (103758130-103758976) | |
| 238-972, gnl|rheMac2|chr11 (103586723-103587571) | |
| 238-972, gnl|rn3|chr7 (24631359-24630551) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-194, gnl|bosTau2|chr5 (37956941-37956746) | |
| 1-194, gnl|canFam2|chr15 (44207760-44208078) | |
| 1-194, gnl|dasNov1|scaffold_256 (19316-19606) | |
| 1-194, gnl|echTel1|scaffold_316487 (74864-74544) | |
| 1-194, gnl|hg17|chr12 (101292846-101293168) | |
| 1-194, gnl|Hg17|chr12 (101293103-101292877) | |
| 1-194, gnl|loxAfr1|scaffold_116330 (1747-2079) | |
| 1-194, gnl|mm7|chr10 (87494565-87494251) | |
| 1-194, gnl|Mm7|chr10 (87494322-87494532) | |
| 1-194, gnl|monDom2|scaffold_34 (10961062-10960707) | |
| 1-194, gnl|oryCun1|scaffold_52248 (1055-1369) | |
| 1-194, gnl|panTro1|chr10_random (711981-711660) | |
| 1-194, gnl|rheMac2|chr11 (103587625-103587966) | |
| 1-194, gnl|rn3|chr7 (24630495-24630183) | |
| 238-972, gnl|bosTau2|chr5 (37956745-37956016) | |
| 238-972, gnl|canFam2|chr15 (44206865-44207713) | |
| 238-972, gnl|echTel1|scaffold_316487 (75760-74918) | |
| 238-972, gnl|hg17|chr12 (101291946-101292792) | |
| 238-972, gnl|Hg17|chr12 (101292876-101292110) | |
| 238-972, gnl|loxAfr1|scaffold_116330 (848-1693) | |
| 238-972, gnl|mm7|chr10 (87495404-87494619) | |
| 238-972, gnl|Mm7|chr10 (87494533-87495262) | |
| 238-972, gnl|monDom2|scaffold_34 (10961987-10961118) | |
| 238-972, gnl|oryCun1|scaffold_52248 (181-1005) | |
| 238-972, gnl|panTro1|chr10 (103758130-103758976) | |
| 238-972, gnl|rheMac2|chr11 (103586723-103587571) | |
| 238-972, gnl|rn3|chr7 (24631359-24630551) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| ret (0.257467) | |
| tes (0.207814) | |
| aor (0.195274) | |
| fat (0.147427) | |
| bla (0.124347) | |
| tra (0.123092) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (0.257467) | |
| tes (0.207814) | |
| aor (0.195274) | |
| fat (0.147427) | |
| bla (0.124347) | |
| tra (0.123092) |