Non-Coding RNA Search

Ss1.1-Pig4-TMW8048O18.5

Sequence:


               
               GTGTTTTCCCCTGGTGCAGGCGCTGTTCCTTGCAGAGCGGAAGCCATAGGAGGAGGAATT
TAAGGACGAAGACCGGCTGCTACCCCCCTCAGCACTCCAAGCTGCAAGCTGCGCCATGCT
TCCTCTCCGCAGTGGCCTAACTAGGATTCTGTCCCCGCGGATGCTAGCTACTCAGGTATG
CTCATCTTTTGCCACAGGACCCAGACAATACGATGGAACATTCTATGAATTTCGTACCGA
TTATCTTAAGCCCTCAAAGATGAATGAGTTCCTGGAAAATGTTAAGAAAAACATTCATCT
TCGGACAGCTCGCTCTGAATTGGTTGGATACTGGAGTGTAGAATTTGGAGGCAGACTGAA
TAAGGTGTTTCATATTTGGAAGTATGACAATTTTGCTCATCGAATTGAAGTTCAGAAAGC
CTTGGCCAAAGATAAGGAATGGCAAGAACAATTTCTCATTCCAAATCTGGCTCTTATTGA
TAAACAGGAGAGTGAAATTACTTATCTGGTGCCATGGTGCAAATTAGAAAAACCTCCAAA
AGAAGGAGTTTATGAACTGGCTACTTTTCAGATGAAACCTGGTGGGCCAGCTCTGTGGGG
GGACCCATTTAAAAGGGCAGTTCACACTCATATCAATCAAGGCTATGCAAAATTAGTTGG
AGTATTCCATGCAGAATATGGCATGCTCAACAGAGTTCACGTTCTTTGGTGGAACGAGAG
TGCAGATAGCCGTGCAGCCGGGAGACATCAGTCTCATGAGGATCCCAGGGTCGTGGCAGC
TGTTCGGGAAAGTGTCAACTTCCTTGGGTCTCAGCAGAATATGCTTCTGACTCCTACATC
ATTTTCACCTTTGAAATAGTTTTCTACTAAAATACAAAGCATTTCATGAACTGCTGCAAG
ATATGTCTGCTAATGGTGCTTGATTTTTCCTAAAAGATTCTCATTTTTATTTGAAGGAGG
TGGTAAGCTATTGCTATGTCCCTTGCAGTTTTAAAAACCACCGCTGTCCACTGTCACCAC
CACCTCAAGAAACAGTCTATTCATTTTCCCCTTGACATTTTAGTATCTGCTAGACATTAA
AAATAGTTGCTATTGGAGTTCTCCTGAGGTGCAGTGGTATAAGGATTTGGTGGTGTCACT
GCAGTGGCTTGGGTCAGTGCTGTGACATGGGTTCAACCCCTGGCCTGGGAACTTCCACTT
GCCATGGGTGTGGCCAAAAAAAATAGTTGCCATTACTACAAGATCTTGATTTTTTATTTG
TTTCAGAATATCTCTTACACTCCATTTGACAGCCCTCTATTTTTAAAGCATCTTCTAATA
TTCAAATGATCATGTTACATTTCCATACATGTGATAATATTTTTAAGTTATTTGAATACA
TTATCAACCTTTCATCATGTCAGTTTTTCTGAGATTTTAAGGCTTGATATTCATAAAAAT
ATTAAGCATATTTCTTTATTACGGAAAAGTACAATATCATCAGTGTCATCTTATTAATTA
TAGTTTTTACATTAATAATCAGTTACTTGGAAAATAATACTGTTAGGTCCTGCTATTAAA
AATCATTGATGACTCCTTGGTTTATATGCTGCAGTGTCATTACAGTTAATTTTACTAATT
TTTACTTCATTTTGGATCACTGTTTAACAAAGGTACTTGGTCATCTGTTTGTTTTCATGA
GTTATTTTTTGATATGGACATGTTTGCCCTAATAAAAGCCTATATATACAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTTTTCCCCTGGTGCAGGCGCTGTTCCTTGCAGAGCGGAAGCCATAGGAGGAGGAATT
TAAGGACGAAGACCGGCTGCTACCCCCCTCAGCACTCCAAGCTGCAAGCTGCGCCATGCT
TCCTCTCCGCAGTGGCCTAACTAGGATTCTGTCCCCGCGGATGCTAGCTACTCAGGTATG
CTCATCTTTTGCCACAGGACCCAGACAATACGATGGAACATTCTATGAATTTCGTACCGA
TTATCTTAAGCCCTCAAAGATGAATGAGTTCCTGGAAAATGTTAAGAAAAACATTCATCT
TCGGACAGCTCGCTCTGAATTGGTTGGATACTGGAGTGTAGAATTTGGAGGCAGACTGAA
TAAGGTGTTTCATATTTGGAAGTATGACAATTTTGCTCATCGAATTGAAGTTCAGAAAGC
CTTGGCCAAAGATAAGGAATGGCAAGAACAATTTCTCATTCCAAATCTGGCTCTTATTGA
TAAACAGGAGAGTGAAATTACTTATCTGGTGCCATGGTGCAAATTAGAAAAACCTCCAAA
AGAAGGAGTTTATGAACTGGCTACTTTTCAGATGAAACCTGGTGGGCCAGCTCTGTGGGG
GGACCCATTTAAAAGGGCAGTTCACACTCATATCAATCAAGGCTATGCAAAATTAGTTGG
AGTATTCCATGCAGAATATGGCATGCTCAACAGAGTTCACGTTCTTTGGTGGAACGAGAG
TGCAGATAGCCGTGCAGCCGGGAGACATCAGTCTCATGAGGATCCCAGGGTCGTGGCAGC
TGTTCGGGAAAGTGTCAACTTCCTTGGGTCTCAGCAGAATATGCTTCTGACTCCTACATC
ATTTTCACCTTTGAAATAGTTTTCTACTAAAATACAAAGCATTTCATGAACTGCTGCAAG
ATATGTCTGCTAATGGTGCTTGATTTTTCCTAAAAGATTCTCATTTTTATTTGAAGGAGG
TGGTAAGCTATTGCTATGTCCCTTGCAGTTTTAAAAACCACCGCTGTCCACTGTCACCAC
CACCTCAAGAAACAGTCTATTCATTTTCCCCTTGACATTTTAGTATCTGCTAGACATTAA
AAATAGTTGCTATTGGAGTTCTCCTGAGGTGCAGTGGTATAAGGATTTGGTGGTGTCACT
GCAGTGGCTTGGGTCAGTGCTGTGACATGGGTTCAACCCCTGGCCTGGGAACTTCCACTT
GCCATGGGTGTGGCCAAAAAAAATAGTTGCCATTACTACAAGATCTTGATTTTTTATTTG
TTTCAGAATATCTCTTACACTCCATTTGACAGCCCTCTATTTTTAAAGCATCTTCTAATA
TTCAAATGATCATGTTACATTTCCATACATGTGATAATATTTTTAAGTTATTTGAATACA
TTATCAACCTTTCATCATGTCAGTTTTTCTGAGATTTTAAGGCTTGATATTCATAAAAAT
ATTAAGCATATTTCTTTATTACGGAAAAGTACAATATCATCAGTGTCATCTTATTAATTA
TAGTTTTTACATTAATAATCAGTTACTTGGAAAATAATACTGTTAGGTCCTGCTATTAAA
AATCATTGATGACTCCTTGGTTTATATGCTGCAGTGTCATTACAGTTAATTTTACTAATT
TTTACTTCATTTTGGATCACTGTTTAACAAAGGTACTTGGTCATCTGTTTGTTTTCATGA
GTTATTTTTTGATATGGACATGTTTGCCCTAATAAAAGCCTATATATACAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|58568053|gb|AAW78972.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|58568053|gb|AAW78972.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               782-1090, gnl|bosTau2|chr8 (50648007-50647697)
               

               
               782-1090, gnl|Hg17|chr9 (104601097-104601407)
               


               
               1219-1418, gnl|bosTau2|chr8 (50647708-50647509)
               

               
               1219-1418, gnl|Hg17|chr9 (104601396-104601597)
               


               
               1429-1737, gnl|bosTau2|chr24 (39980823-39981138)
               

               
               1429-1737, gnl|Hg17|chr9 (104615373-104615670)
               


               
               1492-1721, gnl|bosTau2|chr14 (42588497-42588724)
               

               
               1492-1721, gnl|Hg17|chr9 (104601709-104601948)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               782-1090, gnl|bosTau2|chr8 (50648007-50647697)
               

               
               782-1090, gnl|Hg17|chr9 (104601097-104601407)
               


               
               1219-1418, gnl|bosTau2|chr8 (50647708-50647509)
               

               
               1219-1418, gnl|Hg17|chr9 (104601396-104601597)
               


               
               1429-1737, gnl|bosTau2|chr24 (39980823-39981138)
               

               
               1429-1737, gnl|Hg17|chr9 (104615373-104615670)
               


               
               1492-1721, gnl|bosTau2|chr14 (42588497-42588724)
               

               
               1492-1721, gnl|Hg17|chr9 (104601709-104601948)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               lyg (0.532411)
               

               
               pro (0.512033)
               

               
               mgp (0.461361)
               

               
               liv (0.292569)
               

               
               che (0.272628)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.532411)
               

               
               pro (0.512033)
               

               
               mgp (0.461361)
               

               
               liv (0.292569)
               

               
               che (0.272628)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	782-1090, gnl\|bosTau2\|chr8 (50648007-50647697)
	782-1090, gnl\|Hg17\|chr9 (104601097-104601407)

	1219-1418, gnl\|bosTau2\|chr8 (50647708-50647509)
	1219-1418, gnl\|Hg17\|chr9 (104601396-104601597)

	1429-1737, gnl\|bosTau2\|chr24 (39980823-39981138)
	1429-1737, gnl\|Hg17\|chr9 (104615373-104615670)

	1492-1721, gnl\|bosTau2\|chr14 (42588497-42588724)
	1492-1721, gnl\|Hg17\|chr9 (104601709-104601948)

	lyg (0.532411)
	pro (0.512033)
	mgp (0.461361)
	liv (0.292569)
	che (0.272628)
	kid (0.259471)
	cbe (0.239234)
	pgl (0.236967)
	mgm (0.180343)
	sto (0.179824)
	fty (0.17584)
	fat (0.147427)
	ski (0.146735)
	spl (0.143184)
	csk (0.140746)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	tra (0.123092)
	eep (0.122564)
	spc (0.113366)
	cty (0.10408)