Non-Coding RNA Search

Ss1.1-Pig4-TMW8048P06.3

Sequence:


               
               TTTATGTGTTCATCTTCCTGCTTTAGAACCTTGTTTATGGTCTGGGTTTTTCTGAGCAAA
AGCCCACAGTGGTCCCCCGCCCCTTCCCACTCAGCCCTCTCTGCTCTCCGTCAGTTCCGG
GCCCCGGGCTGACAGTCTCCCACTGAGCAGCGCTCGGAGCAGAAGACCAGAAGGTTCCTT
CCTGACCTTAGTTCGCAGAGCCAGGCCAGGTGCACCCCAGCTCAGGAGTTGAGAGGACCC
TCCCCCTGGAGTTGGACAGTGCTCAAGCGGGGGCCTTTTTCTAAGACCCTGATTGAACAG
GGAAGCAAGCACATGATCGAAGCCTCCCCCACTTTTGTATTCAGAAACGGCCCTTCCTCA
CTGTGGTGGTGTTGGTGTGAAGAGCAGCGGAGAGGGCCACACCCCATTCTAAAAAGAGCT
GTCTGAGGTGCTCTGCTCCACCTGGGGTCGACTTCAGTGGCTGAGACCTTCAAGTCCAGG
TGGAGACCCCGGGGGGCCTTCCGCCCCTCTGGCCAGACCCACCCAGTGCCCCCCTCCCTG
CCCCATGTGAGTGTGTGCCAGGGCTGAGCTGCTGCAGGCTCACCCACTGCCCCAGTGCAT
CTGTGCCCGAGTAGGTCTTGGTCCATTGGTACTTTGTTCGAGAGCAGCATATGCCATCCT
GTTGGACACTGTCATTTTGGGCCTTGCCAGTTCTCACAGAATCGCATCACTGTATTTATT
GTATAATATTGTGAATATCGGAAGTTCTGAGCGAGTGCTGTCTAGAAAGAAGGCTTTGGA
GTGTGAATGCTGGTGAGGGGATTTGCGCCTCCTTTCTCTGCTGTGGCCCTGGCCTGCTGA
AAAAATGTGTGGATTTTAGAGTTTGAGCCATTAGCATCCATCTCCTCCCTATTGTTCTTA
TGAAATGCATTAAGGACCAGTATAGAAGAATTCCCCAACCTAAGGAAAAATAACTCTGGA
TGAATTGTTCCAGTTGCATCAGTTACATTTGATGCAGGATCAGTCAGGTCTGGAGGCGAG
TGCCTGCCAGCAGCTTCCCTGTGTGGACCAGTGTGGTCAGCTACTGCCTTCTGGGGCCAT
ACCCCCCATGACTGGGGGTCACGCCAGGATGTAGTCCTGACAACAAGGATCCTCTTATTT
CATTTCTGCAAAATGAAAGAGCCTTTGGATTTACTAGCAGAGTTTTTTCCTCCTTGTATT
TTTAAATCTTGGTTTCCCCCATCCTTCCCATCCCTTGAATGGACTCAGAATTGTCAGCTA
CCTCCCCAGGAGGGGTTTGGGAAGCTTCTGATGGCCCATCAGTTGACTAGACGACAGCTG
TGAGTTAAGAGGTCTGCTGCTAACACGACGGCTTCTCCCAGAGAGCACATGGAGGTCCAG
ACAGATCCAGACCTTGGCCCTAAAAAAAAAAACGTGTGCTGTAAAGTTACTTGATGTATA
TTTATTATAATTATTTATGGTTGCATTTAACAAACTTTTCATTCAACTTGATGCTATTTA
CACCATTGCTGTGTAAAGGAAGCCCACGACAGGAAAAGTTGCACCAATAAATAATCTTCA
TCTAATTTTGATTTACCTTAAGACTTGTGTGACCATCTACTCTTGCTGAGAAGAGTTGAG
GGCCAACATGCTTTGGTGGCTCTGATACTTGAGGGTCACCAAGAGGCTAGGAATTAAAAG
TGTTTTCAATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATGTGTTCATCTTCCTGCTTTAGAACCTTGTTTATGGTCTGGGTTTTTCTGAGCAAA
AGCCCACAGTGGTCCCCCGCCCCTTCCCACTCAGCCCTCTCTGCTCTCCGTCAGTTCCGG
GCCCCGGGCTGACAGTCTCCCACTGAGCAGCGCTCGGAGCAGAAGACCAGAAGGTTCCTT
CCTGACCTTAGTTCGCAGAGCCAGGCCAGGTGCACCCCAGCTCAGGAGTTGAGAGGACCC
TCCCCCTGGAGTTGGACAGTGCTCAAGCGGGGGCCTTTTTCTAAGACCCTGATTGAACAG
GGAAGCAAGCACATGATCGAAGCCTCCCCCACTTTTGTATTCAGAAACGGCCCTTCCTCA
CTGTGGTGGTGTTGGTGTGAAGAGCAGCGGAGAGGGCCACACCCCATTCTAAAAAGAGCT
GTCTGAGGTGCTCTGCTCCACCTGGGGTCGACTTCAGTGGCTGAGACCTTCAAGTCCAGG
TGGAGACCCCGGGGGGCCTTCCGCCCCTCTGGCCAGACCCACCCAGTGCCCCCCTCCCTG
CCCCATGTGAGTGTGTGCCAGGGCTGAGCTGCTGCAGGCTCACCCACTGCCCCAGTGCAT
CTGTGCCCGAGTAGGTCTTGGTCCATTGGTACTTTGTTCGAGAGCAGCATATGCCATCCT
GTTGGACACTGTCATTTTGGGCCTTGCCAGTTCTCACAGAATCGCATCACTGTATTTATT
GTATAATATTGTGAATATCGGAAGTTCTGAGCGAGTGCTGTCTAGAAAGAAGGCTTTGGA
GTGTGAATGCTGGTGAGGGGATTTGCGCCTCCTTTCTCTGCTGTGGCCCTGGCCTGCTGA
AAAAATGTGTGGATTTTAGAGTTTGAGCCATTAGCATCCATCTCCTCCCTATTGTTCTTA
TGAAATGCATTAAGGACCAGTATAGAAGAATTCCCCAACCTAAGGAAAAATAACTCTGGA
TGAATTGTTCCAGTTGCATCAGTTACATTTGATGCAGGATCAGTCAGGTCTGGAGGCGAG
TGCCTGCCAGCAGCTTCCCTGTGTGGACCAGTGTGGTCAGCTACTGCCTTCTGGGGCCAT
ACCCCCCATGACTGGGGGTCACGCCAGGATGTAGTCCTGACAACAAGGATCCTCTTATTT
CATTTCTGCAAAATGAAAGAGCCTTTGGATTTACTAGCAGAGTTTTTTCCTCCTTGTATT
TTTAAATCTTGGTTTCCCCCATCCTTCCCATCCCTTGAATGGACTCAGAATTGTCAGCTA
CCTCCCCAGGAGGGGTTTGGGAAGCTTCTGATGGCCCATCAGTTGACTAGACGACAGCTG
TGAGTTAAGAGGTCTGCTGCTAACACGACGGCTTCTCCCAGAGAGCACATGGAGGTCCAG
ACAGATCCAGACCTTGGCCCTAAAAAAAAAAACGTGTGCTGTAAAGTTACTTGATGTATA
TTTATTATAATTATTTATGGTTGCATTTAACAAACTTTTCATTCAACTTGATGCTATTTA
CACCATTGCTGTGTAAAGGAAGCCCACGACAGGAAAAGTTGCACCAATAAATAATCTTCA
TCTAATTTTGATTTACCTTAAGACTTGTGTGACCATCTACTCTTGCTGAGAAGAGTTGAG
GGCCAACATGCTTTGGTGGCTCTGATACTTGAGGGTCACCAAGAGGCTAGGAATTAAAAG
TGTTTTCAATTC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               301-451, - strand, RNAz p=0.973195
               

               
               1029-1140, - strand, RNAz p=0.665007
               

               
               1410-1567, - strand, RNAz p=0.863071

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               301-451, - strand, RNAz p=0.973195
               

               
               1029-1140, - strand, RNAz p=0.665007
               

               
               1410-1567, - strand, RNAz p=0.863071

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               390-461, - strand, RNAmicro p=0.931893

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               390-461, - strand, RNAmicro p=0.931893

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               24-1685, gnl|bosTau2|chr17 (36990880-36989239)
               

               
               24-1685, gnl|Hg17|chr12 (111062362-111060727)
               

               
               24-1685, gnl|Mm7|chr5 (120601130-120602588)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-1685, gnl|bosTau2|chr17 (36990880-36989239)
               

               
               24-1685, gnl|Hg17|chr12 (111062362-111060727)
               

               
               24-1685, gnl|Mm7|chr5 (120601130-120602588)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cbe (0.478469)
               

               
               ece (0.45861)
               

               
               elu (0.385356)
               

               
               che (0.272628)
               

               
               gul (0.177588)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               ece (0.45861)
               

               
               elu (0.385356)
               

               
               che (0.272628)
               

               
               gul (0.177588)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	301-451, - strand, RNAz p=0.973195
	1029-1140, - strand, RNAz p=0.665007
	1410-1567, - strand, RNAz p=0.863071

	24-1685, gnl\|bosTau2\|chr17 (36990880-36989239)
	24-1685, gnl\|Hg17\|chr12 (111062362-111060727)
	24-1685, gnl\|Mm7\|chr5 (120601130-120602588)

	cbe (0.478469)
	ece (0.45861)
	elu (0.385356)
	che (0.272628)
	gul (0.177588)
	cje (0.165235)
	cki (0.165235)
	lnt (0.142308)
	cbr (0.127975)
	eep (0.122564)
	pgl (0.118483)
	jca (0.11396)
	ldo (0.0970026)