Non-Coding RNA Search

Ss1.1-Pig4-TMW8048P08.3

Sequence:


               
               GTTTAACGATGTGGCAAACTCAGGTTTGAACTTAGATGGCAATAAAATACCTTGTATTTT
TCTTGATTGAGAACCAGAGATGTTGAAAGCAAAAATTACCTCAAATATTGTGAAACCCTT
CATTTTCAACTTAAGATAATTTGTTTTACAAAATGGAAGGTGACTCTTTGGTGGGCTTAT
AAATTGGGAAGAGTATTGGATTACCCCTGAAACGTCTCTGGAAGCTTCTGTTAACCTAAT
TTTTTTTTAAAGTCGGACAATGGTATATAACTTTTAACTCTCGATAGGAACTAATTCTGA
AGCATCAAATGCTTCTGAAACAGAATCTGACCACAGAGACGAACTCAGTGATTGGTCATT
AGCTCCAACAGAGGAAGAGAGGGAGAACTTCCTGCGCAGAGGAGACGGGCGACGGCGTGG
AGGTGGAGGAAGAGGACAGGGAGGAAGAGGACGCGGAGGTGGCTTCAAAGGAAACGACGA
TCACTCCCGAACAGATAATCGTTCGCGTAATCCAAGGGAGGCGAAAGGCAGAACAGCAGA
TGGATCCCTCCAGATCAGAGTTGACTGCAATAATGAAAGGAGTGTCCACACTAAAACCTT
ACAGAATACCTCCAGCGAAGGTAATCGGCTGCGCACGGGTAAAGATCGTAACCAGAAGAA
GGAAAAGCCGGACAGCGTGGACGGTCAGCAACCACTTGTGAACGGAGTACCCTAAACTGC
GTAATTCTGGAGTTATATTTCCTATACCATTTCTGTAACTCGTATTCCATATTAGCAAAC
TTTGTTAGGCCAAAGACAAATAGTAGGCAAGGTGGCACAGGGCATGAAATGAGCACCAGT
TCTCTTAAGACTTACGTTTTTCGTATTGGCCATAAGCACCCATTTCCAAATCTGCACAAA
AAGAGATCTTAAAAATTTGAAATATTACTTGAAAGTAATTAAACATACTTCGTACTTCAG
GACAAGATTTTGGTTTGGTTTATTTTTTAAATACCAGGCAATGGTATTCTTTGTTAATTT
GGACCGTTTTCCTGCGTTGGGTGATAACTCACCGGGACATTTCAGTTTTTCGGAATAAAT
AGCATTTATGGTCATTATATTAGACTTCTGTTTTTAATTCCATCTAGAAGTCCTCGAAAT
ACTCTTGTCATTTCATGTCCTGTGTCAGTTTATGTTTTGGTCCACTTTTCCAGTATTTTA
GTGGACCCTGAGATGTGTGTGATGTGACGTTTGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTAACGATGTGGCAAACTCAGGTTTGAACTTAGATGGCAATAAAATACCTTGTATTTT
TCTTGATTGAGAACCAGAGATGTTGAAAGCAAAAATTACCTCAAATATTGTGAAACCCTT
CATTTTCAACTTAAGATAATTTGTTTTACAAAATGGAAGGTGACTCTTTGGTGGGCTTAT
AAATTGGGAAGAGTATTGGATTACCCCTGAAACGTCTCTGGAAGCTTCTGTTAACCTAAT
TTTTTTTTAAAGTCGGACAATGGTATATAACTTTTAACTCTCGATAGGAACTAATTCTGA
AGCATCAAATGCTTCTGAAACAGAATCTGACCACAGAGACGAACTCAGTGATTGGTCATT
AGCTCCAACAGAGGAAGAGAGGGAGAACTTCCTGCGCAGAGGAGACGGGCGACGGCGTGG
AGGTGGAGGAAGAGGACAGGGAGGAAGAGGACGCGGAGGTGGCTTCAAAGGAAACGACGA
TCACTCCCGAACAGATAATCGTTCGCGTAATCCAAGGGAGGCGAAAGGCAGAACAGCAGA
TGGATCCCTCCAGATCAGAGTTGACTGCAATAATGAAAGGAGTGTCCACACTAAAACCTT
ACAGAATACCTCCAGCGAAGGTAATCGGCTGCGCACGGGTAAAGATCGTAACCAGAAGAA
GGAAAAGCCGGACAGCGTGGACGGTCAGCAACCACTTGTGAACGGAGTACCCTAAACTGC
GTAATTCTGGAGTTATATTTCCTATACCATTTCTGTAACTCGTATTCCATATTAGCAAAC
TTTGTTAGGCCAAAGACAAATAGTAGGCAAGGTGGCACAGGGCATGAAATGAGCACCAGT
TCTCTTAAGACTTACGTTTTTCGTATTGGCCATAAGCACCCATTTCCAAATCTGCACAAA
AAGAGATCTTAAAAATTTGAAATATTACTTGAAAGTAATTAAACATACTTCGTACTTCAG
GACAAGATTTTGGTTTGGTTTATTTTTTAAATACCAGGCAATGGTATTCTTTGTTAATTT
GGACCGTTTTCCTGCGTTGGGTGATAACTCACCGGGACATTTCAGTTTTTCGGAATAAAT
AGCATTTATGGTCATTATATTAGACTTCTGTTTTTAATTCCATCTAGAAGTCCTCGAAAT
ACTCTTGTCATTTCATGTCCTGTGTCAGTTTATGTTTTGGTCCACTTTTCCAGTATTTTA
GTGGACCCTGAGATGTGTGTGATGTGACGTTTGTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|388754|gb|AAA62469.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|388754|gb|AAA62469.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               262-381, - strand, RNAz p=0.890088
               

               
               1059-1236, + strand, RNAz p=0.993259

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               262-381, - strand, RNAz p=0.890088
               

               
               1059-1236, + strand, RNAz p=0.993259

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of M67468, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of M67468, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-471, gnl|bosTau2|chrX (10783394-10782922)
               

               
               1-471, gnl|Hg17|chrX (146731645-146732118)
               

               
               1-471, gnl|Mm7|chrX (64106568-64107004)
               


               
               552-1236, gnl|bosTau2|chrX (10779586-10778903)
               

               
               552-1236, gnl|Hg17|chrX (146735747-146736423)
               

               
               552-1236, gnl|Mm7|chrX (64110102-64110774)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-471, gnl|bosTau2|chrX (10783394-10782922)
               

               
               1-471, gnl|Hg17|chrX (146731645-146732118)
               

               
               1-471, gnl|Mm7|chrX (64106568-64107004)
               


               
               552-1236, gnl|bosTau2|chrX (10779586-10778903)
               

               
               552-1236, gnl|Hg17|chrX (146735747-146736423)
               

               
               552-1236, gnl|Mm7|chrX (64110102-64110774)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               ova (0.387397)
               

               
               thg (0.253582)
               

               
               hea (0.204499)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.387397)
               

               
               thg (0.253582)
               

               
               hea (0.204499)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	262-381, - strand, RNAz p=0.890088
	1059-1236, + strand, RNAz p=0.993259

	1-471, gnl\|bosTau2\|chrX (10783394-10782922)
	1-471, gnl\|Hg17\|chrX (146731645-146732118)
	1-471, gnl\|Mm7\|chrX (64106568-64107004)

	552-1236, gnl\|bosTau2\|chrX (10779586-10778903)
	552-1236, gnl\|Hg17\|chrX (146735747-146736423)
	552-1236, gnl\|Mm7\|chrX (64110102-64110774)

	ova (0.387397)
	thg (0.253582)
	hea (0.204499)
	cut (0.169924)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	csk (0.140746)
	sug (0.127291)
	bla (0.124347)
	eru (0.120048)
	pgl (0.118483)
	spc (0.113366)