Non-Coding RNA Search

Ss1.1-Pig4-TMW8048P14.3

Sequence:


               
               CACTCCCTCCCACCGCACCACAGGTCTTACCTCACAAGCTCTAACCTAAATCACAGAGGA
CTAACAGTGACCTCCCTTGCGGCCCCTCCAGGGGGCCGGTCACACCCCCGACACCTCACA
TTAGTGCCTCGACTCTTAGTGGCAGAACTGGGTTGGGGAAGTTTGTGATCTGGAGCTCAG
CACATGCTTGGCAACATTTTTCTCATTTCATTAGCACTAAAGTCTCTTATTCTCAGGAAT
TTGTCAAAAAAGAGTAAAAACCACCTGAGATTCCGCATACCAGATTATGAACTTTTCTCA
TAGGTTTGAATTGCTTCCTTACCTGTCATAAATTAACCACAGCTTCATTTGACCACCAGG
TCTTCAGTCTGTTGACAGTTTTCAGCATGACCGAATCGCTCATTTTTTTTTTTTTTTTGC
TTTCAGAAATTGGCTTGGTTCTCTTTAGAGTTGGTGTAAACATGCCATGTAATAAATGAT
TTCCACTTAATGGTACAACAAAATTATTGCTTTCTTAGATGTATGTGTAGTAAAAGTCAA
TATACACATTTATATAATTTTTCTTCAAAATCTTATACTTAATTTGATATTTCTAAAAAT
TGCACATGTAAGTCATGTGTATAACATGCTAAAGTACTTTAACTGTGATCTTAAAACTGA
ATAAAATATTTAATAAAAATTTGAAATATTTTAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTCCCTCCCACCGCACCACAGGTCTTACCTCACAAGCTCTAACCTAAATCACAGAGGA
CTAACAGTGACCTCCCTTGCGGCCCCTCCAGGGGGCCGGTCACACCCCCGACACCTCACA
TTAGTGCCTCGACTCTTAGTGGCAGAACTGGGTTGGGGAAGTTTGTGATCTGGAGCTCAG
CACATGCTTGGCAACATTTTTCTCATTTCATTAGCACTAAAGTCTCTTATTCTCAGGAAT
TTGTCAAAAAAGAGTAAAAACCACCTGAGATTCCGCATACCAGATTATGAACTTTTCTCA
TAGGTTTGAATTGCTTCCTTACCTGTCATAAATTAACCACAGCTTCATTTGACCACCAGG
TCTTCAGTCTGTTGACAGTTTTCAGCATGACCGAATCGCTCATTTTTTTTTTTTTTTTGC
TTTCAGAAATTGGCTTGGTTCTCTTTAGAGTTGGTGTAAACATGCCATGTAATAAATGAT
TTCCACTTAATGGTACAACAAAATTATTGCTTTCTTAGATGTATGTGTAGTAAAAGTCAA
TATACACATTTATATAATTTTTCTTCAAAATCTTATACTTAATTTGATATTTCTAAAAAT
TGCACATGTAAGTCATGTGTATAACATGCTAAAGTACTTTAACTGTGATCTTAAAACTGA
ATAAAATATTTAATAAAAATTTGAAATATTTTAAAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               59-696, gnl|bosTau2|chr1 (29249872-29250504)
               

               
               59-696, gnl|Hg17|chr3 (109012094-109012741)
               

               
               59-696, gnl|Mm7|chr16 (49954409-49953769)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-696, gnl|bosTau2|chr1 (29249872-29250504)
               

               
               59-696, gnl|Hg17|chr3 (109012094-109012741)
               

               
               59-696, gnl|Mm7|chr16 (49954409-49953769)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               aor (0.390549)
               

               
               ski (0.29347)
               

               
               thg (0.253582)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               ski (0.29347)
               

               
               thg (0.253582)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               spc (0.113366)

	59-696, gnl\|bosTau2\|chr1 (29249872-29250504)
	59-696, gnl\|Hg17\|chr3 (109012094-109012741)
	59-696, gnl\|Mm7\|chr16 (49954409-49953769)

	aor (0.390549)
	ski (0.29347)
	thg (0.253582)
	sag (0.182715)
	gul (0.177588)
	mga (0.160205)
	pty (0.142714)
	spc (0.113366)