Ss1.1-Pig4-TMW8048P18.5
|
TCGGCGCCATGGCGGTGGCAAATTCAAGCCCTGTCAACCCCGTGGTGTTCTTCGATGTCA
GCATCGGCGGCCAGGAAGTTGGCCGCATGAAGATCGAGCTCTTTGCAGACGTGGTGCCTA
AAACAGCCGAGAATTTTAGGCAGTTCTGCACTGGAGAATTCAGAAAAGATGGGGTTCCAA
TAGGATACAAGGGGAGTACCTTCCACAGGGTCATAAAGGATTTCATGATTCAGGGTGGAG
ATTTTGTTAATGGAGATGGTACCGGAGTCGCCAGTATCTACAGGGGGCCGTTTGCAGATG
AAAACTTTAAACTCAGACACTCAGCTCCGGGCCTGCTTTCCATGGCAAACAGTGGTCCCA
GCACAAACGGCTGCCAGTTTTTCATCACCTGCTCTAAGTGCGACTGGCTAGATGGGAAGC
ACGTGGTGTTCGGGAAAATCATTGATGGGCTTCTAGTGATGCGAAAGATTGAGAATGTTC
CCACAGGCCCCAACAATAAGCCCAAGCTGCCCGTGGTGATCTCGCAGTGTGGGGAGATGT
AGCCCGAGAAAGACGGAATCAGACCTCCGCCTCTGTGCCAGTGTAGGCCTTCCCTTGCTC
AGGCTGATGCTCTCGAGTAAGATAATCTGGATTGGCCCCGTGTGTGCTTCCCTGCCTGCT
GCTGCCCCATCTGATCAAGAGACCTTGGAAGTATCACAGATTCAGAACCCAGGATTTTGT
GTTTTAAGTTTTCAACTGTAAATAAAGTTGGTTGGTTTTTGGTGAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCGGCGCCATGGCGGTGGCAAATTCAAGCCCTGTCAACCCCGTGGTGTTCTTCGATGTCA
GCATCGGCGGCCAGGAAGTTGGCCGCATGAAGATCGAGCTCTTTGCAGACGTGGTGCCTA
AAACAGCCGAGAATTTTAGGCAGTTCTGCACTGGAGAATTCAGAAAAGATGGGGTTCCAA
TAGGATACAAGGGGAGTACCTTCCACAGGGTCATAAAGGATTTCATGATTCAGGGTGGAG
ATTTTGTTAATGGAGATGGTACCGGAGTCGCCAGTATCTACAGGGGGCCGTTTGCAGATG
AAAACTTTAAACTCAGACACTCAGCTCCGGGCCTGCTTTCCATGGCAAACAGTGGTCCCA
GCACAAACGGCTGCCAGTTTTTCATCACCTGCTCTAAGTGCGACTGGCTAGATGGGAAGC
ACGTGGTGTTCGGGAAAATCATTGATGGGCTTCTAGTGATGCGAAAGATTGAGAATGTTC
CCACAGGCCCCAACAATAAGCCCAAGCTGCCCGTGGTGATCTCGCAGTGTGGGGAGATGT
AGCCCGAGAAAGACGGAATCAGACCTCCGCCTCTGTGCCAGTGTAGGCCTTCCCTTGCTC
AGGCTGATGCTCTCGAGTAAGATAATCTGGATTGGCCCCGTGTGTGCTTCCCTGCCTGCT
GCTGCCCCATCTGATCAAGAGACCTTGGAAGTATCACAGATTCAGAACCCAGGATTTTGT
GTTTTAAGTTTTCAACTGTAAATAAAGTTGGTTGGTTTTTGGTGAAAA
|
|
gi|21312022|ref|NP_082953.1| |
Protein identifier
|
gi|21312022|ref|NP_082953.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
24-436, gnl|bosTau2|chr10 (14393032-14393430) |
|
24-436, gnl|canFam2|chr25 (20832087-20832368) |
|
24-436, gnl|dasNov1|scaffold_261643 (1383-1106) |
|
24-436, gnl|echTel1|scaffold_188365 (3797-3529) |
|
24-436, gnl|fr1|chrUn (68565972-68565595) |
|
24-436, gnl|hg17|chr13 (19651209-19651485) |
|
24-436, gnl|Hg17|chr21 (19151962-19152359) |
|
24-436, gnl|loxAfr1|scaffold_6995 (848-1120) |
|
24-436, gnl|mm7|chr7 (116937514-116937791) |
|
24-436, gnl|Mm7|chr9 (96537296-96537692) |
|
24-436, gnl|monDom2|scaffold_312 (76909-77186) |
|
24-436, gnl|oryCun1|scaffold_173019 (598-874) |
|
24-436, gnl|panTro1|chr14 (18543390-18543666) |
|
24-436, gnl|rheMac2|chr17 (1332164-1331888) |
|
24-436, gnl|rn3|chr4_random (277878-278155) |
|
24-436, gnl|xenTro1|scaffold_143 (1715340-1715063) |
| |
|
560-760, gnl|bosTau2|chr11 (42706445-42706647) |
|
560-760, gnl|Hg17|chr1 (42811321-42811532) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
24-436, gnl|bosTau2|chr10 (14393032-14393430) |
|
24-436, gnl|canFam2|chr25 (20832087-20832368) |
|
24-436, gnl|dasNov1|scaffold_261643 (1383-1106) |
|
24-436, gnl|echTel1|scaffold_188365 (3797-3529) |
|
24-436, gnl|fr1|chrUn (68565972-68565595) |
|
24-436, gnl|hg17|chr13 (19651209-19651485) |
|
24-436, gnl|Hg17|chr21 (19151962-19152359) |
|
24-436, gnl|loxAfr1|scaffold_6995 (848-1120) |
|
24-436, gnl|mm7|chr7 (116937514-116937791) |
|
24-436, gnl|Mm7|chr9 (96537296-96537692) |
|
24-436, gnl|monDom2|scaffold_312 (76909-77186) |
|
24-436, gnl|oryCun1|scaffold_173019 (598-874) |
|
24-436, gnl|panTro1|chr14 (18543390-18543666) |
|
24-436, gnl|rheMac2|chr17 (1332164-1331888) |
|
24-436, gnl|rn3|chr4_random (277878-278155) |
|
24-436, gnl|xenTro1|scaffold_143 (1715340-1715063) |
| |
|
560-760, gnl|bosTau2|chr11 (42706445-42706647) |
|
560-760, gnl|Hg17|chr1 (42811321-42811532) |
|
med (0.465008) |
|
cst (0.420109) |
|
fty (0.351679) |
|
ill (0.351185) |
|
fce (0.271592) |
|
jej (0.197844) |
|
nlu (0.191681) |
|
eye (0.170503) |
|
cut (0.169924) |
|
cki (0.165235) |
|
cje (0.165235) |
|
nco (0.161734) |
|
cag (0.151194) |
|
spl (0.143184) |
|
che (0.136314) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
thg (0.126791) |
|
cly (0.120642) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
med (0.465008) |
|
cst (0.420109) |
|
fty (0.351679) |
|
ill (0.351185) |
|
fce (0.271592) |
|
jej (0.197844) |
|
nlu (0.191681) |
|
eye (0.170503) |
|
cut (0.169924) |
|
cki (0.165235) |
|
cje (0.165235) |
|
nco (0.161734) |
|
cag (0.151194) |
|
spl (0.143184) |
|
che (0.136314) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
thg (0.126791) |
|
cly (0.120642) |
|
eru (0.120048) |
|
pgl (0.118483) |
