Non-Coding RNA Search

Ss1.1-Pig4-TMW8048P21.5

Sequence:


               
               CTAACAGCAAACACATAGTGGCAGGACAACTTTGAGTGAGTAGTCCTAAGTGGTGAACTG
GATGACGTTGCACTAGAAAAACACCAGTAATTTACATTTGAGTTTCTAGTAGTAATTACT
GATTTGATGATCATTTAGGTCCCATATATCTTAATATATTTATCCAGGCTTCTAACTTTT
CCCACATACACTGTATCTAGGGGCATAATATATCTTCCTGTTAGGATTATATCATGACCT
TAGAGTTTTCCATCCTGTTGGGGAGGTTTAATATGTTTCTTTACTGATTATGAAACTTTA
TTCCCTGAAACTGGATAACTTTACTTCATAGTTAAATAGATAAGGCAGAGTGATCATTTT
AGCCTGCTCAAACTGATAGAAATCCGTGAAGCTGTGGTTGGCATATGTTGGATAACAAAT
GGAGAATGTCTAAGAGGCATGTGCTGCTGTGGAGGTGTAGTGGACATGTGTACAGAAGCT
TTCAATCTTAACTATATAGTGTTAGTATGATTCTATACTATTGGAAAAATAGCACATTTT
TTTTCTATTTTATAAGTTGTATGCATAAACAAGATTTGTAATGTTTCATTTATAAACTGC
CTTCAACACATGCTTACCTGTTAATAGTGTTTTCTCAAAGTATGGTAGTATGTCTTCCAA
AATTTCACTATATGCTTACAGTAAGTAGTTCCTAGCTTGTTGAAATGTTAAATTCCTTGT
TGGTTCTTTTGATTCTTGTTGATAACAAGCCTGAAAGGCATTATAATCATTTCTTACAGG
GTGAAAATTTAGGAAGATTGTGTATTGGAGCCTAAATAGTTACTTTATTCATTATCATCT
TTGAGTAATATTTTAAAAAACAAACAAATGCTACTTCCAGTTAATGCATTTGGCCCTACT
GAATTTCAGGGACCAGAATACTAAGAAAGTTCTGCATCTTAAACTTGTCACCAAGTAAGC
ATCAGCTTGGGATTATTCTGAAGTAGTCATTGCTTAAAAACTATTGTAAGTAACAGTTTG
GCAAGATCTCCAAGCAGACATTTCCATATTAAAATCTTTTGCCTAAAAGAATTTGTATGT
AAATGTTAATGGAAAACACATTTAAACAAAATAAACTTTAAGGTGGCCCAAAATGAAAGC
CACAGACAATTTATTATTTGGTGCTTAGTCTTTGTAAGGGCTCTCCATGGTTTGACTTGC
CCCAGCCACCTTTAAATGAGTACAGGTCACCTTAAAACATGCTTATTAAATAGAAGGTTC
ATCCTATAACTTCATTGAAAACCTTAGCCTGAAATAAGTTGCTTTGGCTTCTAGTCAGCA
CTGATTAAAATGTGAATAATGAAGTTGACTATCCTAAACCTGGTTTATCTCAATCCATAC
TATCATAGACTTTTGAGGTAAATACAGTTCTTATCTAGTGGTATTCTACTTGTATCTGGA
ATACTGTATTCATTAAAATTTTACTATGTTCATTTTTTGTATTCCCTTTTTTTTTTTTTT
GCTCATGCATGTATCCTTAGTATAAATGTGTCGCTTTTAAAGTTTTGTCTCTGTGACTTT
TAGAAATAAATTTCAAAAAGAATTGCTTCAGAAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAACAGCAAACACATAGTGGCAGGACAACTTTGAGTGAGTAGTCCTAAGTGGTGAACTG
GATGACGTTGCACTAGAAAAACACCAGTAATTTACATTTGAGTTTCTAGTAGTAATTACT
GATTTGATGATCATTTAGGTCCCATATATCTTAATATATTTATCCAGGCTTCTAACTTTT
CCCACATACACTGTATCTAGGGGCATAATATATCTTCCTGTTAGGATTATATCATGACCT
TAGAGTTTTCCATCCTGTTGGGGAGGTTTAATATGTTTCTTTACTGATTATGAAACTTTA
TTCCCTGAAACTGGATAACTTTACTTCATAGTTAAATAGATAAGGCAGAGTGATCATTTT
AGCCTGCTCAAACTGATAGAAATCCGTGAAGCTGTGGTTGGCATATGTTGGATAACAAAT
GGAGAATGTCTAAGAGGCATGTGCTGCTGTGGAGGTGTAGTGGACATGTGTACAGAAGCT
TTCAATCTTAACTATATAGTGTTAGTATGATTCTATACTATTGGAAAAATAGCACATTTT
TTTTCTATTTTATAAGTTGTATGCATAAACAAGATTTGTAATGTTTCATTTATAAACTGC
CTTCAACACATGCTTACCTGTTAATAGTGTTTTCTCAAAGTATGGTAGTATGTCTTCCAA
AATTTCACTATATGCTTACAGTAAGTAGTTCCTAGCTTGTTGAAATGTTAAATTCCTTGT
TGGTTCTTTTGATTCTTGTTGATAACAAGCCTGAAAGGCATTATAATCATTTCTTACAGG
GTGAAAATTTAGGAAGATTGTGTATTGGAGCCTAAATAGTTACTTTATTCATTATCATCT
TTGAGTAATATTTTAAAAAACAAACAAATGCTACTTCCAGTTAATGCATTTGGCCCTACT
GAATTTCAGGGACCAGAATACTAAGAAAGTTCTGCATCTTAAACTTGTCACCAAGTAAGC
ATCAGCTTGGGATTATTCTGAAGTAGTCATTGCTTAAAAACTATTGTAAGTAACAGTTTG
GCAAGATCTCCAAGCAGACATTTCCATATTAAAATCTTTTGCCTAAAAGAATTTGTATGT
AAATGTTAATGGAAAACACATTTAAACAAAATAAACTTTAAGGTGGCCCAAAATGAAAGC
CACAGACAATTTATTATTTGGTGCTTAGTCTTTGTAAGGGCTCTCCATGGTTTGACTTGC
CCCAGCCACCTTTAAATGAGTACAGGTCACCTTAAAACATGCTTATTAAATAGAAGGTTC
ATCCTATAACTTCATTGAAAACCTTAGCCTGAAATAAGTTGCTTTGGCTTCTAGTCAGCA
CTGATTAAAATGTGAATAATGAAGTTGACTATCCTAAACCTGGTTTATCTCAATCCATAC
TATCATAGACTTTTGAGGTAAATACAGTTCTTATCTAGTGGTATTCTACTTGTATCTGGA
ATACTGTATTCATTAAAATTTTACTATGTTCATTTTTTGTATTCCCTTTTTTTTTTTTTT
GCTCATGCATGTATCCTTAGTATAAATGTGTCGCTTTTAAAGTTTTGTCTCTGTGACTTT
TAGAAATAAATTTCAAAAAGAATTGCTTCAGAAGTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               848-960, - strand, RNAz p=0.670434

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               848-960, - strand, RNAz p=0.670434

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1584, gnl|bosTau2|chr1 (20188573-20190138)
               

               
               1-1584, gnl|Hg17|chr3 (88185419-88183858)
               

               
               1-1584, gnl|Mm7|chr16 (64804726-64806173)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1584, gnl|bosTau2|chr1 (20188573-20190138)
               

               
               1-1584, gnl|Hg17|chr3 (88185419-88183858)
               

               
               1-1584, gnl|Mm7|chr16 (64804726-64806173)

Expressed library(ies): 29 entry(ies)

More info

Expressed library(ies): 29 entry(ies)

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               liv (0.585137)
               

               
               tra (0.492368)
               

               
               lin (0.436808)
               

               
               kid (0.389206)
               

               
               vin (0.332557)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               tra (0.492368)
               

               
               lin (0.436808)
               

               
               kid (0.389206)
               

               
               vin (0.332557)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	1-1584, gnl\|bosTau2\|chr1 (20188573-20190138)
	1-1584, gnl\|Hg17\|chr3 (88185419-88183858)
	1-1584, gnl\|Mm7\|chr16 (64804726-64806173)

	liv (0.585137)
	tra (0.492368)
	lin (0.436808)
	kid (0.389206)
	vin (0.332557)
	fce (0.271592)
	ret (0.257467)
	bla (0.248694)
	nms (0.213858)
	cty (0.20816)
	tes (0.207814)
	mgm (0.180343)
	fty (0.17584)
	fbs (0.175346)
	mcp (0.170648)
	fhi (0.169578)
	nje (0.16592)
	spl (0.143184)
	lnt (0.142308)
	ssp (0.13552)
	ute (0.132784)
	sug (0.127291)
	eru (0.120048)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)
	cbl (0.114797)
	jca (0.11396)
	eje (0.0988338)