Ss1.1-Pig4-TMW8049A04.3
|
GTTCAAAGAACCTGTGGAGATCCTGCCCAATGTGTGCTACACGGCGTGCGCAACACTCAA
AGGTCCAGATTCCCACTATGGCACAAAAGGACTGAAGAAAGTCGTGCATGAAACACCTAC
TGCTAGCAAGACTGTCTTTTTCTTTTTCAGTTCCCCTGGCAATAATAATGGCACTTCGAT
AGAAGATGGACAAATACCAGAAATAATATTTTATACATAACTTAGCATTATAATACATCT
TGGCTAAATAGTACCATACAGTCTAGTCTCAAAGGCATAAAAAACTGGCCACAAAAAAAG
AGTTTGAGTGTTATGAATATTTATAAGATAAGCGACATCTTAAGTTTCTTAGAGGAAATA
GATAAATGTTGATTTAAATCTCTGCATGATTCAAAGGGAGATTTTCCATTTTCTTATAAC
CTTAGGGAAAAAAAAGAACAGGGTTTAATTGTTTTAAAAAAAAACAGCTATTTCAGCTTT
ATCTTGTATAATTTCATAGATCAGCTGACTCATGATCTTTGAGCAAGTTTTATAATTGAA
AGATCCTTGTTTTATAAAGGTGGTTTGTTTTTTGTTTCTGTTTAACTCTTTTGAAGGTTA
CGTTAAGATGAGGTAGGTCAGTATTCCTACAGAATTCCTTTTAACTCAAATAACTAATTT
CAGAAAATTAAGAAAACTGACCTCATCTTTGGAGTTTTGAAATATCTGGCTGTCAGCATT
TGGAATATTGCTAAAAATAAGCTGAACAAATGCCTAAGGAAATTTTCAATGCATTTACAA
AAGGGTATTTTATAATAGTATGGTAATAGGTTACATAGTACAGTTTTAAACTATAAATGG
AATTTGTACAAATTCGCAATAATCTGATATAAGCAAAAGGATCGAAAGGTATAATCTAAG
ACTGGATTCTTTATTGCTAAACTGCACCACTCTACCTGTCTGTCTGTATGGGGGATGCTG
CTGAGAATTCCCGAGACTGAGATGATGATGGCGATGATGACAATGACAGTGACTAGGAAC
ACAGACCTCAGTTCAACATGGTGGCGATAATCTCACACAGCGAAGAAATGGAATAAAATA
CAGATATTTCTAACAACTACTTCGAAATTTTAAAGATATCCAACAGAATCACTTCTGCTG
AAAGTATACTTTCTGTCACCTACACAGTTCTATCCAAGAAATAAAATATTCATGACCTCA
CTGTCACGGTACCACTGTATTAGGAGGGGATAGGAAGTATGTCTAGCAGAATGATATTTC
TATACTTTTATAAAGCAAAGGTTTTATATAAATAACATTTGTTTTTTCCCCCTTGAAAAT
GATTATCTCATTAAAAGTGTGTGTGTAATTAAGGTATGTCAAATGGTTGTGGGAAGATGG
GTTAAAAAAAATCACAATTCTTTTAAGTATCAACCTAAAAAGTATTTTCTAAATGGCAAT
TAGGATATAAAATTTTTTTCATCCAAAGTAGTATTTCATTTGATATTTTCAAAGAAGGTA
GTGAGGTGTGTTGGTTCCAGAGGTTTCTTAAAACTGCTGAGGAAAAGGGAAACTTCTCTA
TCTCTGGTAGTATGACCTTATGGCAATAAACTTCAGTTAACTGGAATAGCTACAGAATGT
GTGGTTCTGGTTAACTAAAGATTAACCAGCAAACATTCTGTAGTTACCACTATGGAAAAT
ACTTCTGCCTTAAAATGTATGGTATACCAGGGATAAGTTACTGTTTTTTGATATTTGAGG
CCTTTCAGATGCTTCAGATATGTGGCACTGAATGATTGTAACTGAAGGGAGTTCACAGAA
GGGACAAGAAAGGGAACTGTTTACTGATACGGGACATCTCCTGGAATTTAAAAAAAAATA
AATACCTATTATCCTTTTAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTTCAAAGAACCTGTGGAGATCCTGCCCAATGTGTGCTACACGGCGTGCGCAACACTCAA
AGGTCCAGATTCCCACTATGGCACAAAAGGACTGAAGAAAGTCGTGCATGAAACACCTAC
TGCTAGCAAGACTGTCTTTTTCTTTTTCAGTTCCCCTGGCAATAATAATGGCACTTCGAT
AGAAGATGGACAAATACCAGAAATAATATTTTATACATAACTTAGCATTATAATACATCT
TGGCTAAATAGTACCATACAGTCTAGTCTCAAAGGCATAAAAAACTGGCCACAAAAAAAG
AGTTTGAGTGTTATGAATATTTATAAGATAAGCGACATCTTAAGTTTCTTAGAGGAAATA
GATAAATGTTGATTTAAATCTCTGCATGATTCAAAGGGAGATTTTCCATTTTCTTATAAC
CTTAGGGAAAAAAAAGAACAGGGTTTAATTGTTTTAAAAAAAAACAGCTATTTCAGCTTT
ATCTTGTATAATTTCATAGATCAGCTGACTCATGATCTTTGAGCAAGTTTTATAATTGAA
AGATCCTTGTTTTATAAAGGTGGTTTGTTTTTTGTTTCTGTTTAACTCTTTTGAAGGTTA
CGTTAAGATGAGGTAGGTCAGTATTCCTACAGAATTCCTTTTAACTCAAATAACTAATTT
CAGAAAATTAAGAAAACTGACCTCATCTTTGGAGTTTTGAAATATCTGGCTGTCAGCATT
TGGAATATTGCTAAAAATAAGCTGAACAAATGCCTAAGGAAATTTTCAATGCATTTACAA
AAGGGTATTTTATAATAGTATGGTAATAGGTTACATAGTACAGTTTTAAACTATAAATGG
AATTTGTACAAATTCGCAATAATCTGATATAAGCAAAAGGATCGAAAGGTATAATCTAAG
ACTGGATTCTTTATTGCTAAACTGCACCACTCTACCTGTCTGTCTGTATGGGGGATGCTG
CTGAGAATTCCCGAGACTGAGATGATGATGGCGATGATGACAATGACAGTGACTAGGAAC
ACAGACCTCAGTTCAACATGGTGGCGATAATCTCACACAGCGAAGAAATGGAATAAAATA
CAGATATTTCTAACAACTACTTCGAAATTTTAAAGATATCCAACAGAATCACTTCTGCTG
AAAGTATACTTTCTGTCACCTACACAGTTCTATCCAAGAAATAAAATATTCATGACCTCA
CTGTCACGGTACCACTGTATTAGGAGGGGATAGGAAGTATGTCTAGCAGAATGATATTTC
TATACTTTTATAAAGCAAAGGTTTTATATAAATAACATTTGTTTTTTCCCCCTTGAAAAT
GATTATCTCATTAAAAGTGTGTGTGTAATTAAGGTATGTCAAATGGTTGTGGGAAGATGG
GTTAAAAAAAATCACAATTCTTTTAAGTATCAACCTAAAAAGTATTTTCTAAATGGCAAT
TAGGATATAAAATTTTTTTCATCCAAAGTAGTATTTCATTTGATATTTTCAAAGAAGGTA
GTGAGGTGTGTTGGTTCCAGAGGTTTCTTAAAACTGCTGAGGAAAAGGGAAACTTCTCTA
TCTCTGGTAGTATGACCTTATGGCAATAAACTTCAGTTAACTGGAATAGCTACAGAATGT
GTGGTTCTGGTTAACTAAAGATTAACCAGCAAACATTCTGTAGTTACCACTATGGAAAAT
ACTTCTGCCTTAAAATGTATGGTATACCAGGGATAAGTTACTGTTTTTTGATATTTGAGG
CCTTTCAGATGCTTCAGATATGTGGCACTGAATGATTGTAACTGAAGGGAGTTCACAGAA
GGGACAAGAAAGGGAACTGTTTACTGATACGGGACATCTCCTGGAATTTAAAAAAAAATA
AATACCTATTATCCTTTTAAAAAAAAAAAAAAAAAA
|
|
62-255, gnl|bosTau2|chr21 (17398172-17398362) |
|
62-255, gnl|canFam2|chr3 (57658544-57658725) |
|
62-255, gnl|danRer3|chr22 (23485545-23485729) |
|
62-255, gnl|dasNov1|scaffold_107549 (4122-4304) |
|
62-255, gnl|echTel1|scaffold_185970 (576-395) |
|
62-255, gnl|fr1|chrUn (66263135-66263323) |
|
62-255, gnl|galGal2|chr10 (11787292-11787473) |
|
62-255, gnl|hg17|chr15 (81477818-81477999) |
|
62-255, gnl|Hg17|chr15 (81477981-81477826) |
|
62-255, gnl|loxAfr1|scaffold_2905 (4814-4995) |
|
62-255, gnl|mm7|chr7 (77666851-77667032) |
|
62-255, gnl|Mm7|chr7 (77667014-77666846) |
|
62-255, gnl|monDom2|scaffold_45 (1877531-1877712) |
|
62-255, gnl|oryCun1|scaffold_186669 (236-55) |
|
62-255, gnl|panTro1|chr16 (82277118-82277299) |
|
62-255, gnl|rheMac2|chr7 (63515322-63515141) |
|
62-255, gnl|rn3|chr1 (138086461-138086642) |
|
62-255, gnl|tetNig1|chr5 (9591380-9591546) |
|
62-255, gnl|xenTro1|scaffold_613 (201433-201249) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
62-255, gnl|bosTau2|chr21 (17398172-17398362) |
|
62-255, gnl|canFam2|chr3 (57658544-57658725) |
|
62-255, gnl|danRer3|chr22 (23485545-23485729) |
|
62-255, gnl|dasNov1|scaffold_107549 (4122-4304) |
|
62-255, gnl|echTel1|scaffold_185970 (576-395) |
|
62-255, gnl|fr1|chrUn (66263135-66263323) |
|
62-255, gnl|galGal2|chr10 (11787292-11787473) |
|
62-255, gnl|hg17|chr15 (81477818-81477999) |
|
62-255, gnl|Hg17|chr15 (81477981-81477826) |
|
62-255, gnl|loxAfr1|scaffold_2905 (4814-4995) |
|
62-255, gnl|mm7|chr7 (77666851-77667032) |
|
62-255, gnl|Mm7|chr7 (77667014-77666846) |
|
62-255, gnl|monDom2|scaffold_45 (1877531-1877712) |
|
62-255, gnl|oryCun1|scaffold_186669 (236-55) |
|
62-255, gnl|panTro1|chr16 (82277118-82277299) |
|
62-255, gnl|rheMac2|chr7 (63515322-63515141) |
|
62-255, gnl|rn3|chr1 (138086461-138086642) |
|
62-255, gnl|tetNig1|chr5 (9591380-9591546) |
|
62-255, gnl|xenTro1|scaffold_613 (201433-201249) |
|
vin (2.3279) |
|
tbr (2.00432) |
|
cte (1.4637) |
|
sme (1.22175) |
|
isp (1.05263) |
|
bfe (0.899146) |
|
ssp (0.677599) |
|
ste (0.540833) |
|
ldo (0.485013) |
|
mas (0.42061) |
|
liv (0.292569) |
|
fce (0.271592) |
|
thg (0.253582) |
|
mgp (0.230681) |
|
ece (0.229305) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
col (0.195008) |
|
sin (0.174948) |
|
fco (0.157208) |
|
ctl (0.153069) |
|
lun (0.150489) |
|
lyg (0.133103) |
|
sug (0.127291) |
|
tra (0.123092) |
|
ebs (0.118301) |
|
spc (0.113366) |
|
nbm (0.0993246) |
|
vin (2.3279) |
|
tbr (2.00432) |
|
cte (1.4637) |
|
sme (1.22175) |
|
isp (1.05263) |
|
bfe (0.899146) |
|
ssp (0.677599) |
|
ste (0.540833) |
|
ldo (0.485013) |
|
mas (0.42061) |
|
liv (0.292569) |
|
fce (0.271592) |
|
thg (0.253582) |
|
mgp (0.230681) |
|
ece (0.229305) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
col (0.195008) |
|
sin (0.174948) |
|
fco (0.157208) |
|
ctl (0.153069) |
|
lun (0.150489) |
|
lyg (0.133103) |
|
sug (0.127291) |
|
tra (0.123092) |
|
ebs (0.118301) |
|
spc (0.113366) |
|
nbm (0.0993246) |
