Non-Coding RNA Search

Ss1.1-Pig4-TMW8049A07.5

Sequence:


               
               TTCTGGCCCCAGACCCGGCCCCGGCCCCGGCCCCGGCCCCGGGAGAGACTCCGCGGTCCA
GGATCTCCCGGAGGAGCACGATCCTGGATTACATCAACGTGATCCCGCGCGCTGGCCCCC
TGGCTCCGAAACGGAAAGGCAAACCAAGGGGTCCATCTCAGGCCCCTCCTCCAGATGCGC
ACACCCTGGAGCCCAGAATGAACCAGAAGGAGCTGCATTTTGTCTCTCACAACTGTCCAG
GACCCAAATCAGCCATGCAAGTCCCAGACTCAGAGAACCACCCGGAGGAGCTCCATTACG
CTGTCCTCAACTTCCCAGACCCCAGACCACGGGAGAGCCAGGGGCCCAAGGATTTCCACT
CAGAATATGCTGCGGTCCAGTTCCACTGACTGGAGTATGCCGTGGTCCAGTCCCAGGTCT
GCTGGGCTGCAGGACTGGGATCCAGGGAGGAAGGCAGGGCAGTTGGGAAGAGAGCAGAAC
GTATAGTCTGTCTGTCCGCCTGTCTTTAATCCTCCAAGGATGGGTCATCCCATCGCAGAC
ACAGCCTGACAAGTGTCTCCAGAGTGGCCTTCTCTTGAATACGCTATTCTGAGAAGCCAG
CAGAAGCTTTTCTTCCGTCAAACCCACGGACCACCCTGGCTGATTACTCACCGTCTCGGT
TTCTCAAAGGCGGAAGGGCCTTTCGAGAAGATGAAATCATCATCTTTGCGAGGTCGCCAA
GCCAACCTCCCAGGTCAGGTCTGGCCCCCTGCCTATTTTCATGGCACCTGTGAGCCAAGC
CTGTTCTTTACATGTTCAATGAGTAAGGGGGTGGGGACAGTCAAAAGCAGAGTGTCTTGT
GATGCATGGAAATGACTTGCAATTCAAATCTCCGTGTCCGTAAATAAACATAAATCTTTA
TTGGAGCACAACCACACCCACTCTTTTCTGGATCACCCTTGAGCGGCCAAAAATTAAAAA
AAAAAAGCTTTGAACTTGGCCCCCAGAAGCCAGTATATGCAGAGTAACTGAATTACAGGC
TCATGGAAAAGGATCGCCCAATGCAACTGCCTCATTTTTTAAAAAAACACTTTTAAAAGT
TGAAGTAGAGTCGATGTACGATATTATGTAAAATTCAAGTGTACAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTGGCCCCAGACCCGGCCCCGGCCCCGGCCCCGGCCCCGGGAGAGACTCCGCGGTCCA
GGATCTCCCGGAGGAGCACGATCCTGGATTACATCAACGTGATCCCGCGCGCTGGCCCCC
TGGCTCCGAAACGGAAAGGCAAACCAAGGGGTCCATCTCAGGCCCCTCCTCCAGATGCGC
ACACCCTGGAGCCCAGAATGAACCAGAAGGAGCTGCATTTTGTCTCTCACAACTGTCCAG
GACCCAAATCAGCCATGCAAGTCCCAGACTCAGAGAACCACCCGGAGGAGCTCCATTACG
CTGTCCTCAACTTCCCAGACCCCAGACCACGGGAGAGCCAGGGGCCCAAGGATTTCCACT
CAGAATATGCTGCGGTCCAGTTCCACTGACTGGAGTATGCCGTGGTCCAGTCCCAGGTCT
GCTGGGCTGCAGGACTGGGATCCAGGGAGGAAGGCAGGGCAGTTGGGAAGAGAGCAGAAC
GTATAGTCTGTCTGTCCGCCTGTCTTTAATCCTCCAAGGATGGGTCATCCCATCGCAGAC
ACAGCCTGACAAGTGTCTCCAGAGTGGCCTTCTCTTGAATACGCTATTCTGAGAAGCCAG
CAGAAGCTTTTCTTCCGTCAAACCCACGGACCACCCTGGCTGATTACTCACCGTCTCGGT
TTCTCAAAGGCGGAAGGGCCTTTCGAGAAGATGAAATCATCATCTTTGCGAGGTCGCCAA
GCCAACCTCCCAGGTCAGGTCTGGCCCCCTGCCTATTTTCATGGCACCTGTGAGCCAAGC
CTGTTCTTTACATGTTCAATGAGTAAGGGGGTGGGGACAGTCAAAAGCAGAGTGTCTTGT
GATGCATGGAAATGACTTGCAATTCAAATCTCCGTGTCCGTAAATAAACATAAATCTTTA
TTGGAGCACAACCACACCCACTCTTTTCTGGATCACCCTTGAGCGGCCAAAAATTAAAAA
AAAAAAGCTTTGAACTTGGCCCCCAGAAGCCAGTATATGCAGAGTAACTGAATTACAGGC
TCATGGAAAAGGATCGCCCAATGCAACTGCCTCATTTTTTAAAAAAACACTTTTAAAAGT
TGAAGTAGAGTCGATGTACGATATTATGTAAAATTCAAGTGTACAATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61850837|ref|XP_580346.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61850837|ref|XP_580346.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               243-359, - strand, RNAz p=0.680438
               

               
               440-548, + strand, RNAz p=0.90312
               

               
               618-776, - strand, RNAz p=0.925331

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               243-359, - strand, RNAz p=0.680438
               

               
               440-548, + strand, RNAz p=0.90312
               

               
               618-776, - strand, RNAz p=0.925331

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF311905, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF311905, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               123-565, gnl|bosTau2|chr18 (50775499-50775075)
               

               
               123-565, gnl|Hg17|chr19 (56606431-56604806)
               


               
               578-927, gnl|bosTau2|chr18 (50774897-50774566)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-565, gnl|bosTau2|chr18 (50775499-50775075)
               

               
               123-565, gnl|Hg17|chr19 (56606431-56604806)
               


               
               578-927, gnl|bosTau2|chr18 (50774897-50774566)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	243-359, - strand, RNAz p=0.680438
	440-548, + strand, RNAz p=0.90312
	618-776, - strand, RNAz p=0.925331

	123-565, gnl\|bosTau2\|chr18 (50775499-50775075)
	123-565, gnl\|Hg17\|chr19 (56606431-56604806)

	578-927, gnl\|bosTau2\|chr18 (50774897-50774566)

	nlu (0.191681)
	ton (0.1755)
	rec (0.17307)
	fhi (0.169578)
	cki (0.165235)
	nco (0.161734)
	csp (0.161186)
	mga (0.160205)
	fco (0.157208)
	cli (0.152812)
	nmm (0.132802)
	cly (0.120642)
	ecc (0.115035)
	eje (0.0988338)