Ss1.1-Pig4-TMW8049A08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGCCTTGCAGTTTCTCCGCGGCCCACTCCAGTGGCAGCAACTCCAGAATGTGGCAACT TGCAAGCCTCTTACTGCTCCTGATCATCTGGGCAGTTTCCAGCACACCAGTTCCTCCTGA CTCAGTGTTCTCCAGCAGCCAGCGGGCCCACCAGGTGCTGCGCAGCAAACGCGCCAACTC CTTCCTGGAGGAGCTGCGGCCCAGCAGCCTGGAGCGTGAGTGCAAGGAGGAGACCTGTGA TTTCGAGGAGGCTCGGGAGATTTTCCAAAACACGGAAAACACAATGGCCTTCTGGTCCAA GTACCATGACGGGGACCAGTGCGCGGTCTCGCCCCCTGAGCACCTGTGCGACAGCCCGTG CTGCGGGCGTGGCACCTGTATCGACGGCCTGGGCGGCTTCCGCTGCGACTGCGCTCAGGG CTGGGAGGGCCGCTTCTGCCTGCACGAGGTGCGCTTCTCCAACTGCTCGACGGAAAACGG TGGCTGTGCGCACTACTGCCTGGAGGAGGAGGGCGGGCGCCGCTGCCGCTGCGCGCCAGG CTACCGGCTGGGGGACGACCACCTGCAGTGCGAGCCAAAGGTGAAGTTCCCTTGCGGGAG GCTAGGGAATCGCATGGAGAAGAAACGCAAGAGCTTGAAGCGTGATACAGACCAAGTTGA CAAAAAAGAAGACCAAATAGATCCGAGGCTCGTCAATGGGAAGCAGTCCCCATGGGGAGA GAGCCCCTGGCAGGTGATCCTGCTGGACTCAAAGAAGAAGCTGGCCTGTGGGGCAGTGCT CATCCATGTCTCCTGGGTGCTGACAGCGGCCCACTGCTTGGACGACTACAAGAAGCTCAC TGTCAGGCTCGGCGAATATGATCTGAGGCGTCGGGAAAAATGGGAGGTAGACCTGGACAT CAAGGAGTTCCTCGTCCACCCTAACTACACCAGGAGCACCAGTGACAATGACATCGCCCT GCTCCGCCTGGCCGAACCGGCCACTTTCTCGCAGACCATCGTGCCCATCTGCCTCCCAGA CAGTGGCCTCTCTGAGCGTGAGCTCACCCGGGTTGGCCAAGAGACGGTGGTGACCGGCTG GGGCTACCGCAGCGAGGCCAAGACAAACCGCAGCTTCATCCTCAACTTCATCAAGGTCCC TGTGGCCCCGCACAATGAGTGCGTCCAGGCCATGCACAACAAGATCTCTGAGAACATGCT GTGTGCAGGCATCCTGGGGGACTCTCGTGATGCCTGCGAGGGCGACAGCGGGGGGCCTAT GGTGGCCTCCTTCCGCGGCACTTGGTTCCTGGTGGGCCTGGTGAGCTGGGGTGAGGGCTG TGGGCGCCTCCACAACTATGGCGTTTACACCAAAGTCAGCCGTTACCTCGACTGGATCCA TGGCCACATCAGAATGGAGGAGGCCTTCCACAAGAACCAGGTGCCTTAGTGTCTCCCTAC CCCACTGCTTGGGCCCCAGAGGCCATCCTCGGGTGGGGGCTGGTTTGTTGAATGGCAACA GTAGGACATTAAAGGGGCATGCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGCCTTGCAGTTTCTCCGCGGCCCACTCCAGTGGCAGCAACTCCAGAATGTGGCAACT TGCAAGCCTCTTACTGCTCCTGATCATCTGGGCAGTTTCCAGCACACCAGTTCCTCCTGA CTCAGTGTTCTCCAGCAGCCAGCGGGCCCACCAGGTGCTGCGCAGCAAACGCGCCAACTC CTTCCTGGAGGAGCTGCGGCCCAGCAGCCTGGAGCGTGAGTGCAAGGAGGAGACCTGTGA TTTCGAGGAGGCTCGGGAGATTTTCCAAAACACGGAAAACACAATGGCCTTCTGGTCCAA GTACCATGACGGGGACCAGTGCGCGGTCTCGCCCCCTGAGCACCTGTGCGACAGCCCGTG CTGCGGGCGTGGCACCTGTATCGACGGCCTGGGCGGCTTCCGCTGCGACTGCGCTCAGGG CTGGGAGGGCCGCTTCTGCCTGCACGAGGTGCGCTTCTCCAACTGCTCGACGGAAAACGG TGGCTGTGCGCACTACTGCCTGGAGGAGGAGGGCGGGCGCCGCTGCCGCTGCGCGCCAGG CTACCGGCTGGGGGACGACCACCTGCAGTGCGAGCCAAAGGTGAAGTTCCCTTGCGGGAG GCTAGGGAATCGCATGGAGAAGAAACGCAAGAGCTTGAAGCGTGATACAGACCAAGTTGA CAAAAAAGAAGACCAAATAGATCCGAGGCTCGTCAATGGGAAGCAGTCCCCATGGGGAGA GAGCCCCTGGCAGGTGATCCTGCTGGACTCAAAGAAGAAGCTGGCCTGTGGGGCAGTGCT CATCCATGTCTCCTGGGTGCTGACAGCGGCCCACTGCTTGGACGACTACAAGAAGCTCAC TGTCAGGCTCGGCGAATATGATCTGAGGCGTCGGGAAAAATGGGAGGTAGACCTGGACAT CAAGGAGTTCCTCGTCCACCCTAACTACACCAGGAGCACCAGTGACAATGACATCGCCCT GCTCCGCCTGGCCGAACCGGCCACTTTCTCGCAGACCATCGTGCCCATCTGCCTCCCAGA CAGTGGCCTCTCTGAGCGTGAGCTCACCCGGGTTGGCCAAGAGACGGTGGTGACCGGCTG GGGCTACCGCAGCGAGGCCAAGACAAACCGCAGCTTCATCCTCAACTTCATCAAGGTCCC TGTGGCCCCGCACAATGAGTGCGTCCAGGCCATGCACAACAAGATCTCTGAGAACATGCT GTGTGCAGGCATCCTGGGGGACTCTCGTGATGCCTGCGAGGGCGACAGCGGGGGGCCTAT GGTGGCCTCCTTCCGCGGCACTTGGTTCCTGGTGGGCCTGGTGAGCTGGGGTGAGGGCTG TGGGCGCCTCCACAACTATGGCGTTTACACCAAAGTCAGCCGTTACCTCGACTGGATCCA TGGCCACATCAGAATGGAGGAGGCCTTCCACAAGAACCAGGTGCCTTAGTGTCTCCCTAC CCCACTGCTTGGGCCCCAGAGGCCATCCTCGGGTGGGGGCTGGTTTGTTGAATGGCAACA GTAGGACATTAAAGGGGCATGCAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 116-283, gnl|bosTau2|chr2 (1125549-1125379) | |
| 116-283, gnl|canFam2|chr19 (26197210-26197018) | |
| 116-283, gnl|danRer3|chr15 (46865682-46865852) | |
| 116-283, gnl|dasNov1|scaffold_107900 (4210-4403) | |
| 116-283, gnl|echTel1|scaffold_191420 (2890-2710) | |
| 116-283, gnl|fr1|chrUn (225537717-225537552) | |
| 116-283, gnl|galGal2|chr9 (709140-709308) | |
| 116-283, gnl|hg17|chr2 (127895068-127895261) | |
| 116-283, gnl|Hg17|chr2 (127895085-127895255) | |
| 116-283, gnl|loxAfr1|scaffold_20072 (32082-31886) | |
| 116-283, gnl|mm7|chr18 (32527108-32526924) | |
| 116-283, gnl|Mm7|chr18 (32527095-32526928) | |
| 116-283, gnl|oryCun1|scaffold_185525 (13690-13497) | |
| 116-283, gnl|panTro1|chr13 (14012775-14012968) | |
| 116-283, gnl|rheMac2|chr13 (133870036-133870229) | |
| 116-283, gnl|rn3|chr18 (24597322-24597138) | |
| 116-283, gnl|tetNig1|chrUn_random (84465106-84465272) | |
| 116-283, gnl|xenTro1|scaffold_209 (1506124-1505949) | |
| 446-592, gnl|bosTau2|chr2 (1123739-1123593) | |
| 446-592, gnl|Hg17|chr2 (127897079-127897275) | |
| 446-592, gnl|Mm7|chr18 (32525360-32525220) | |
| 838-1513, gnl|bosTau2|chr2 (1118915-1118240) | |
| 838-1513, gnl|Hg17|chr2 (127902150-127902802) | |
| 838-1513, gnl|Mm7|chr18 (32515907-32515225) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 116-283, gnl|bosTau2|chr2 (1125549-1125379) | |
| 116-283, gnl|canFam2|chr19 (26197210-26197018) | |
| 116-283, gnl|danRer3|chr15 (46865682-46865852) | |
| 116-283, gnl|dasNov1|scaffold_107900 (4210-4403) | |
| 116-283, gnl|echTel1|scaffold_191420 (2890-2710) | |
| 116-283, gnl|fr1|chrUn (225537717-225537552) | |
| 116-283, gnl|galGal2|chr9 (709140-709308) | |
| 116-283, gnl|hg17|chr2 (127895068-127895261) | |
| 116-283, gnl|Hg17|chr2 (127895085-127895255) | |
| 116-283, gnl|loxAfr1|scaffold_20072 (32082-31886) | |
| 116-283, gnl|mm7|chr18 (32527108-32526924) | |
| 116-283, gnl|Mm7|chr18 (32527095-32526928) | |
| 116-283, gnl|oryCun1|scaffold_185525 (13690-13497) | |
| 116-283, gnl|panTro1|chr13 (14012775-14012968) | |
| 116-283, gnl|rheMac2|chr13 (133870036-133870229) | |
| 116-283, gnl|rn3|chr18 (24597322-24597138) | |
| 116-283, gnl|tetNig1|chrUn_random (84465106-84465272) | |
| 116-283, gnl|xenTro1|scaffold_209 (1506124-1505949) | |
| 446-592, gnl|bosTau2|chr2 (1123739-1123593) | |
| 446-592, gnl|Hg17|chr2 (127897079-127897275) | |
| 446-592, gnl|Mm7|chr18 (32525360-32525220) | |
| 838-1513, gnl|bosTau2|chr2 (1118915-1118240) | |
| 838-1513, gnl|Hg17|chr2 (127902150-127902802) | |
| 838-1513, gnl|Mm7|chr18 (32515907-32515225) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.611247) | |
| fli (0.608643) | |
| eli (0.607257) |