Ss1.1-Pig4-TMW8049A09.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGAACGCAGCGTGGAGCACGCAGAGTGAAGTGAAGCAGCCTAACTGGGAATTGACGAT GTGGCGACCGTCACTTCTACTGCTGCTGTTGCTGCTCAGGCGCGGAGCCCACGGGAAGCC GTCCCCTGAAGCCGGCCCTCATGGCCAGGGGAGGGTGCACCAGGCAGCCCCCCTGAGCGA GGCCCCTCATGATGACGCTCACGGGAACTTCCAATATGACCATGAGGCTTTTCTGGGACG AGACGTGGCCAAGGAATTCGACCAACTCAGCCCAGAGGAAAGCCAAGCCCGTCTGGGGCG CATTGTGGACCGCATGGACCGCGCCGGGGACGGGGACGGCTGGGTATCGCTGGCCGAGCT CCGCGCATGGATCGCACACACGCAGCAGCGGCACATACGGGACTCAGTGAGCTCGGCCTG GAACACGTACGACACAGACCGAGACGGGCGTGTTGGTTGGGAGGAGCTGCGCAATGCCAC CTACGGCCACTATGAGCCTGGTGAAGAATTTCACGACGTGGAGGATGCTGAGACCTACAA GAAGATGCTGGCTCGGGATGAGCGGCGTTTCCGGGTGGCTGACCAGGATGGGGACTCCAT GGCCACTCGGGAGGAGCTGACGGCCTTCTTGCACCCGGAGGAGTTCCCGCACATGCGGGA CATCGTGATCGCTGAGACCCTGGAGGATCTGGACAAGAACAAAGACGGCTACGTACAGGT GGAGGAGTACATTGCGGATCTGTACTCCCCGGAGCCTGGGGAGGAGGAGCCGGCCTGGGT GCAGACGGAGCGGGAGCAGTTCCGGGACTTCCGGGATCTGAACAAGGACGGGAAGCTGGA CGGCAGTGAGGTCGGCCACTGGGTGCTGCCTCCCGCCCAGGACCAGCCGCTGGTGGAAGC CAACCACTTGCTGCACGAGAGTGACACGGACAAGGACGGGCGTCTGAGCAAGGCCGAGAT CCTGGGCAACTGGAACATGTTTGTGGGCAGCCAGGCCACCAACTACGGCGAGGACTTGAC ACGTCACCACGATGAGCTCTGAGCCCCAGGGCACCTGCTGCAGCCGCCTTGTCCCATGGG CTGAGCCAGGGAGGGGCCCCCAAGGCCAGGCCCCTTCCCGTGGATGGAGACCCAGCCTGC GGCATCCCCCTGCCCCTGGGCTCTGGTGGACCCACCGAGTCAGCCTCTCTCCCTGAGACA CCACAGCCCCTCGCAGCTCCCCCAGGGGTCACCCACTTCTCACTGGCAGAGTCTCCCAGC CCAGACCAAGGCCCCCATGCCAAGCTCTGCCTCCAAGAATCTCCACGAAGCCCCAGTTTG AAATCTGAGCCTGACCCCACGCAGACGAGAAGCACTGGCTGGGGGCCCTGAACTGGCCCT GTCCCCAGCCCTTGCACAAAGGACACCTCCTCCGCCAGGGAGGCAATAAAATCCGGTGCT GGGGCCTCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGAACGCAGCGTGGAGCACGCAGAGTGAAGTGAAGCAGCCTAACTGGGAATTGACGAT GTGGCGACCGTCACTTCTACTGCTGCTGTTGCTGCTCAGGCGCGGAGCCCACGGGAAGCC GTCCCCTGAAGCCGGCCCTCATGGCCAGGGGAGGGTGCACCAGGCAGCCCCCCTGAGCGA GGCCCCTCATGATGACGCTCACGGGAACTTCCAATATGACCATGAGGCTTTTCTGGGACG AGACGTGGCCAAGGAATTCGACCAACTCAGCCCAGAGGAAAGCCAAGCCCGTCTGGGGCG CATTGTGGACCGCATGGACCGCGCCGGGGACGGGGACGGCTGGGTATCGCTGGCCGAGCT CCGCGCATGGATCGCACACACGCAGCAGCGGCACATACGGGACTCAGTGAGCTCGGCCTG GAACACGTACGACACAGACCGAGACGGGCGTGTTGGTTGGGAGGAGCTGCGCAATGCCAC CTACGGCCACTATGAGCCTGGTGAAGAATTTCACGACGTGGAGGATGCTGAGACCTACAA GAAGATGCTGGCTCGGGATGAGCGGCGTTTCCGGGTGGCTGACCAGGATGGGGACTCCAT GGCCACTCGGGAGGAGCTGACGGCCTTCTTGCACCCGGAGGAGTTCCCGCACATGCGGGA CATCGTGATCGCTGAGACCCTGGAGGATCTGGACAAGAACAAAGACGGCTACGTACAGGT GGAGGAGTACATTGCGGATCTGTACTCCCCGGAGCCTGGGGAGGAGGAGCCGGCCTGGGT GCAGACGGAGCGGGAGCAGTTCCGGGACTTCCGGGATCTGAACAAGGACGGGAAGCTGGA CGGCAGTGAGGTCGGCCACTGGGTGCTGCCTCCCGCCCAGGACCAGCCGCTGGTGGAAGC CAACCACTTGCTGCACGAGAGTGACACGGACAAGGACGGGCGTCTGAGCAAGGCCGAGAT CCTGGGCAACTGGAACATGTTTGTGGGCAGCCAGGCCACCAACTACGGCGAGGACTTGAC ACGTCACCACGATGAGCTCTGAGCCCCAGGGCACCTGCTGCAGCCGCCTTGTCCCATGGG CTGAGCCAGGGAGGGGCCCCCAAGGCCAGGCCCCTTCCCGTGGATGGAGACCCAGCCTGC GGCATCCCCCTGCCCCTGGGCTCTGGTGGACCCACCGAGTCAGCCTCTCTCCCTGAGACA CCACAGCCCCTCGCAGCTCCCCCAGGGGTCACCCACTTCTCACTGGCAGAGTCTCCCAGC CCAGACCAAGGCCCCCATGCCAAGCTCTGCCTCCAAGAATCTCCACGAAGCCCCAGTTTG AAATCTGAGCCTGACCCCACGCAGACGAGAAGCACTGGCTGGGGGCCCTGAACTGGCCCT GTCCCCAGCCCTTGCACAAAGGACACCTCCTCCGCCAGGGAGGCAATAAAATCCGGTGCT GGGGCCTCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1224-1338, - strand, RNAz p=0.981115 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1224-1338, - strand, RNAz p=0.981115 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 297-502, gnl|bosTau2|chr18 (48657057-48657262) | |
| 297-502, gnl|canFam2|chr1 (109866728-109866518) | |
| 297-502, gnl|danRer3|chr3 (27481115-27481305) | |
| 297-502, gnl|echTel1|scaffold_292803 (5686-5897) | |
| 297-502, gnl|fr1|chrUn (79891996-79892194) | |
| 297-502, gnl|hg17|chr19 (54729248-54729458) | |
| 297-502, gnl|Hg17|chr19 (54729261-54729466) | |
| 297-502, gnl|loxAfr1|scaffold_47795 (1591-1378) | |
| 297-502, gnl|mm7|chr7 (41264439-41264234) | |
| 297-502, gnl|Mm7|chr7 (41264429-41264224) | |
| 297-502, gnl|monDom2|scaffold_105 (4103437-4103228) | |
| 297-502, gnl|panTro1|chr20_random (25354992-25355202) | |
| 297-502, gnl|rheMac2|chr19 (55798819-55799019) | |
| 297-502, gnl|rn3|chr1 (95641034-95640829) | |
| 297-502, gnl|tetNig1|chr5 (4237174-4237370) | |
| 297-502, gnl|xenTro1|scaffold_444 (969304-969500) | |
| 734-935, gnl|bosTau2|chr18 (48661811-48662012) | |
| 734-935, gnl|canFam2|chr1 (109855487-109855308) | |
| 734-935, gnl|danRer3|chr3 (27483412-27483674) | |
| 734-935, gnl|dasNov1|scaffold_4688 (14818-14637) | |
| 734-935, gnl|echTel1|scaffold_313619 (3687-3868) | |
| 734-935, gnl|fr1|chrUn (79894080-79894261) | |
| 734-935, gnl|hg17|chr19 (54737616-54737797) | |
| 734-935, gnl|Hg17|chr19 (54737621-54737822) | |
| 734-935, gnl|loxAfr1|scaffold_1208 (5151-5332) | |
| 734-935, gnl|mm7|chr7 (41259501-41259320) | |
| 734-935, gnl|Mm7|chr7 (41259494-41259293) | |
| 734-935, gnl|monDom2|scaffold_105 (4102192-4102008) | |
| 734-935, gnl|oryCun1|scaffold_215034 (140105-140286) | |
| 734-935, gnl|panTro1|chr20 (52097767-52097948) | |
| 734-935, gnl|rheMac2|chr14 (39698985-39698804) | |
| 734-935, gnl|rn3|chr1 (95634122-95633941) | |
| 734-935, gnl|tetNig1|chr5 (4239368-4239549) | |
| 1224-1449, gnl|bosTau2|chr18 (48662584-48662810) | |
| 1224-1449, gnl|canFam2|chr1 (109854714-109854367) | |
| 1224-1449, gnl|echTel1|scaffold_313619 (4517-4889) | |
| 1224-1449, gnl|hg17|chr19 (54738469-54738815) | |
| 1224-1449, gnl|Hg17|chr19 (54738497-54738722) | |
| 1224-1449, gnl|loxAfr1|scaffold_148015 (4397-4741) | |
| 1224-1449, gnl|mm7|chr7 (41258802-41258545) | |
| 1224-1449, gnl|panTro1|chr20 (52098618-52098974) | |
| 1224-1449, gnl|rn3|chr1 (95633458-95633235) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 297-502, gnl|bosTau2|chr18 (48657057-48657262) | |
| 297-502, gnl|canFam2|chr1 (109866728-109866518) | |
| 297-502, gnl|danRer3|chr3 (27481115-27481305) | |
| 297-502, gnl|echTel1|scaffold_292803 (5686-5897) | |
| 297-502, gnl|fr1|chrUn (79891996-79892194) | |
| 297-502, gnl|hg17|chr19 (54729248-54729458) | |
| 297-502, gnl|Hg17|chr19 (54729261-54729466) | |
| 297-502, gnl|loxAfr1|scaffold_47795 (1591-1378) | |
| 297-502, gnl|mm7|chr7 (41264439-41264234) | |
| 297-502, gnl|Mm7|chr7 (41264429-41264224) | |
| 297-502, gnl|monDom2|scaffold_105 (4103437-4103228) | |
| 297-502, gnl|panTro1|chr20_random (25354992-25355202) | |
| 297-502, gnl|rheMac2|chr19 (55798819-55799019) | |
| 297-502, gnl|rn3|chr1 (95641034-95640829) | |
| 297-502, gnl|tetNig1|chr5 (4237174-4237370) | |
| 297-502, gnl|xenTro1|scaffold_444 (969304-969500) | |
| 734-935, gnl|bosTau2|chr18 (48661811-48662012) | |
| 734-935, gnl|canFam2|chr1 (109855487-109855308) | |
| 734-935, gnl|danRer3|chr3 (27483412-27483674) | |
| 734-935, gnl|dasNov1|scaffold_4688 (14818-14637) | |
| 734-935, gnl|echTel1|scaffold_313619 (3687-3868) | |
| 734-935, gnl|fr1|chrUn (79894080-79894261) | |
| 734-935, gnl|hg17|chr19 (54737616-54737797) | |
| 734-935, gnl|Hg17|chr19 (54737621-54737822) | |
| 734-935, gnl|loxAfr1|scaffold_1208 (5151-5332) | |
| 734-935, gnl|mm7|chr7 (41259501-41259320) | |
| 734-935, gnl|Mm7|chr7 (41259494-41259293) | |
| 734-935, gnl|monDom2|scaffold_105 (4102192-4102008) | |
| 734-935, gnl|oryCun1|scaffold_215034 (140105-140286) | |
| 734-935, gnl|panTro1|chr20 (52097767-52097948) | |
| 734-935, gnl|rheMac2|chr14 (39698985-39698804) | |
| 734-935, gnl|rn3|chr1 (95634122-95633941) | |
| 734-935, gnl|tetNig1|chr5 (4239368-4239549) | |
| 1224-1449, gnl|bosTau2|chr18 (48662584-48662810) | |
| 1224-1449, gnl|canFam2|chr1 (109854714-109854367) | |
| 1224-1449, gnl|echTel1|scaffold_313619 (4517-4889) | |
| 1224-1449, gnl|hg17|chr19 (54738469-54738815) | |
| 1224-1449, gnl|Hg17|chr19 (54738497-54738722) | |
| 1224-1449, gnl|loxAfr1|scaffold_148015 (4397-4741) | |
| 1224-1449, gnl|mm7|chr7 (41258802-41258545) | |
| 1224-1449, gnl|panTro1|chr20 (52098618-52098974) | |
| 1224-1449, gnl|rn3|chr1 (95633458-95633235) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| nep (0.919625) | |
| eru (0.720288) | |
| eep (0.490256) | |
| jca (0.45584) | |
| elu (0.385356) | |
| ese (0.379507) | |
| nca (0.273748) | |
| ute (0.132784) | |
| cov (0.132153) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.919625) | |
| eru (0.720288) | |
| eep (0.490256) | |
| jca (0.45584) | |
| elu (0.385356) | |
| ese (0.379507) | |
| nca (0.273748) | |
| ute (0.132784) | |
| cov (0.132153) |