Non-Coding RNA Search

Ss1.1-Pig4-TMW8049A10.5

Sequence:


               
               CTAGGATACTGTCTCAGTAGCCTTACAAAAGAGATTTAAAATGTTTGCTCACTAGTGAGG
TTTTCTCCTCAATGTGATATCAGAGTTTACTAGGAATGCTATTTTTATTTCAGGAAAAAT
TATTTCAAAATAAAGGTAGGTTTCTCCATGAGTCTGTTAGAAGAACATAGACAACCCAGT
TGAGTGGTGCATCCTGCTTTGATTACATGTCCATAGGTGGACAGTCCTTCAGTAAATTGG
AGTTTTGCCTTCTCTTTCAGTTGCAATAAAGTTCTGCTTCTAACTTCTGAAGTTCAAAAT
TTTAGATGCTTACTATTGCTGACTCTGGTGCTCAGACAGTTTTTAAAGCTATTTCAAAGA
GAGAAAGTGCACATGTTTTTATTGAGCTATGCACCCTGTTACAGCTTGCGGTCTTTTTTG
TTTCATCATATCCATTGATATTTCTCTAGCTATTTGAAACTGCTATCTGAAACTTATCTG
AGGTGTATTAGACCTGGCATTTTCATTTTATTCTTCACACATACTGCTCCCTGGTATCTG
AATTAGAAATAACATTACGAGCCAAATACCTAGAGGCTGAAGGACGGGTCTATATGAATA
GCAAAACAGTTAACTATATTGATTTTATTTAGCGGATTTCTGTTCTTGTGATGTTTCTTG
TATTTTTGTTTCAGGGGCTTTTTGGGGATTGATTTTTCAAGATGTGATTTAAATATTTTC
ATCATTGCTTCATATAATATGGAGGTAGGACAGGGAAAAATTACTCAGCTATTCTTAATA
TGCAGAAATTGTTCAAACAAACGACTATAGGATGTTAGACTATCAATTAAATGGTGGAAT
TAGGTTTACCATTTTATTTTTATAAATATATATTTTTTCTGAATGTGTCTGAGTCCAAGA
GTGGGCAAAAAATATTTTCTACTTTGGACTAATCTATAAAGGTTTTTGAAAGTCTGTATT
ACTAACTTGTTGATGTCATGATACCTGCCTTAAGGCACCAGTTGTAAACCTTCATTTTTC
TAAAATAAATTAATTGAAAACATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAGGATACTGTCTCAGTAGCCTTACAAAAGAGATTTAAAATGTTTGCTCACTAGTGAGG
TTTTCTCCTCAATGTGATATCAGAGTTTACTAGGAATGCTATTTTTATTTCAGGAAAAAT
TATTTCAAAATAAAGGTAGGTTTCTCCATGAGTCTGTTAGAAGAACATAGACAACCCAGT
TGAGTGGTGCATCCTGCTTTGATTACATGTCCATAGGTGGACAGTCCTTCAGTAAATTGG
AGTTTTGCCTTCTCTTTCAGTTGCAATAAAGTTCTGCTTCTAACTTCTGAAGTTCAAAAT
TTTAGATGCTTACTATTGCTGACTCTGGTGCTCAGACAGTTTTTAAAGCTATTTCAAAGA
GAGAAAGTGCACATGTTTTTATTGAGCTATGCACCCTGTTACAGCTTGCGGTCTTTTTTG
TTTCATCATATCCATTGATATTTCTCTAGCTATTTGAAACTGCTATCTGAAACTTATCTG
AGGTGTATTAGACCTGGCATTTTCATTTTATTCTTCACACATACTGCTCCCTGGTATCTG
AATTAGAAATAACATTACGAGCCAAATACCTAGAGGCTGAAGGACGGGTCTATATGAATA
GCAAAACAGTTAACTATATTGATTTTATTTAGCGGATTTCTGTTCTTGTGATGTTTCTTG
TATTTTTGTTTCAGGGGCTTTTTGGGGATTGATTTTTCAAGATGTGATTTAAATATTTTC
ATCATTGCTTCATATAATATGGAGGTAGGACAGGGAAAAATTACTCAGCTATTCTTAATA
TGCAGAAATTGTTCAAACAAACGACTATAGGATGTTAGACTATCAATTAAATGGTGGAAT
TAGGTTTACCATTTTATTTTTATAAATATATATTTTTTCTGAATGTGTCTGAGTCCAAGA
GTGGGCAAAAAATATTTTCTACTTTGGACTAATCTATAAAGGTTTTTGAAAGTCTGTATT
ACTAACTTGTTGATGTCATGATACCTGCCTTAAGGCACCAGTTGTAAACCTTCATTTTTC
TAAAATAAATTAATTGAAAACATA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               732-1032, gnl|bosTau2|chr15 (8598623-8598322)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               732-1032, gnl|bosTau2|chr15 (8598623-8598322)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               ret (0.3862)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               col (0.195008)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               col (0.195008)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

	ret (0.3862)
	vin (0.332557)
	mga (0.32041)
	col (0.195008)
	rec (0.17307)
	isp (0.150376)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)
	ebs (0.118301)