Ss1.1-Pig4-TMW8049A21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACTGGACCCTGCACTTCCAGCCATCTGGTCATCATATACCCACTCCTATTATTTGTTTT TGGACGTTGTCTTCTTTGTTTCTTCAGTGGAGTGCAGTTTACTGGAGAAAGAAATGGCCA GTGGTCGTTCACCGTGTTTCTACATAGAAGAACTTAATAAATACCAACAAAAGAACGATG TCATACTTAAGTATCGTGAACTGTGTAAGACAGGACCTGCACATAACTTGAGGTTTACGT ATCAAGTTGTAATAGATGAGAAAGAATTCCCCAAAGCTGAAGGTAGATCAAAGAAGGAAG CCAAAAATGCTGCAGCCAAATTAGCTTTTGAAATAATTAATAAAGAACACAAGGCAAATA GTTCTTCATCACTGCCGACAGCAAATCCTCCAGATAGACAACTCACTGAGAATTACATAG GCCGTATTAATACGATTTCCCAAAAGAAAAACCTATCTGTAAATTATGAACCATGTGAAC CGGGGGAAGATGGGCCTGAAAAATTTCATTATAAATGCAAAATCGGACGGAAGGTATATG GTAGTGGTGTAGGATCCACTAAACAGGAGGCAAAACAATTGGCTGCCAAACAGGCTTATG AAAAGTTACAGTCAGAAAACTTTATGAATGCTGACCCACCATCCTCTAGTTGTCTCAGTA CTGCGAGCAGTGACATCCAAAGCAGCTCTCCCACAACGAGCACATCGGCTTCAGAGTCAG CAACTGAAAATGGCTTCTCAGCAAATACGTCAGAAAGCAGTGATAACAGTGACAGATTAA ACAATTCTGTCCTATCTCCAGTGAATAGTTCTGGAAGTCATCCCCAGAGGGTACAAAGAA TTTTGGCACCTACATTTACCTCGCATGACCTCCGGTATCCAACCATAATTTTTCTACCTT TTTCTCATGTATTCTCTCTCTCTCTCTTTTTTTTTTGCTCAGGTGGATGGAATCTCCATA TCAAAGCAAAACACAAGATTGATAAGAAGACTTATGTTATTAAACGTGAGAAAAAAAAAA GCGAGAAGGTAGAGCGTGAAGTGATCATCACCTTATCGCTTAAACATCAAAAAAATCCCT TCTACTACGGTTGCTGGGATGGGAATGATTATGATCAATATAATTTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACTGGACCCTGCACTTCCAGCCATCTGGTCATCATATACCCACTCCTATTATTTGTTTT TGGACGTTGTCTTCTTTGTTTCTTCAGTGGAGTGCAGTTTACTGGAGAAAGAAATGGCCA GTGGTCGTTCACCGTGTTTCTACATAGAAGAACTTAATAAATACCAACAAAAGAACGATG TCATACTTAAGTATCGTGAACTGTGTAAGACAGGACCTGCACATAACTTGAGGTTTACGT ATCAAGTTGTAATAGATGAGAAAGAATTCCCCAAAGCTGAAGGTAGATCAAAGAAGGAAG CCAAAAATGCTGCAGCCAAATTAGCTTTTGAAATAATTAATAAAGAACACAAGGCAAATA GTTCTTCATCACTGCCGACAGCAAATCCTCCAGATAGACAACTCACTGAGAATTACATAG GCCGTATTAATACGATTTCCCAAAAGAAAAACCTATCTGTAAATTATGAACCATGTGAAC CGGGGGAAGATGGGCCTGAAAAATTTCATTATAAATGCAAAATCGGACGGAAGGTATATG GTAGTGGTGTAGGATCCACTAAACAGGAGGCAAAACAATTGGCTGCCAAACAGGCTTATG AAAAGTTACAGTCAGAAAACTTTATGAATGCTGACCCACCATCCTCTAGTTGTCTCAGTA CTGCGAGCAGTGACATCCAAAGCAGCTCTCCCACAACGAGCACATCGGCTTCAGAGTCAG CAACTGAAAATGGCTTCTCAGCAAATACGTCAGAAAGCAGTGATAACAGTGACAGATTAA ACAATTCTGTCCTATCTCCAGTGAATAGTTCTGGAAGTCATCCCCAGAGGGTACAAAGAA TTTTGGCACCTACATTTACCTCGCATGACCTCCGGTATCCAACCATAATTTTTCTACCTT TTTCTCATGTATTCTCTCTCTCTCTCTTTTTTTTTTGCTCAGGTGGATGGAATCTCCATA TCAAAGCAAAACACAAGATTGATAAGAAGACTTATGTTATTAAACGTGAGAAAAAAAAAA GCGAGAAGGTAGAGCGTGAAGTGATCATCACCTTATCGCTTAAACATCAAAAAAATCCCT TCTACTACGGTTGCTGGGATGGGAATGATTATGATCAATATAATTTAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 231-363, gnl|bosTau2|chr11 (18752599-18752467) | |
| 231-363, gnl|canFam2|chr17 (32627081-32627480) | |
| 231-363, gnl|dasNov1|scaffold_11249 (65043-65473) | |
| 231-363, gnl|echTel1|scaffold_272278 (9937-10409) | |
| 231-363, gnl|hg17|chr2 (37285383-37285822) | |
| 231-363, gnl|Hg17|chr2 (37285769-37285637) | |
| 231-363, gnl|loxAfr1|scaffold_3365 (117888-118320) | |
| 231-363, gnl|mm7|chr17 (77176546-77176912) | |
| 231-363, gnl|Mm7|chr17 (77176858-77176726) | |
| 231-363, gnl|monDom2|scaffold_1 (134735306-134734902) | |
| 231-363, gnl|oryCun1|scaffold_80984 (4436-4008) | |
| 231-363, gnl|panTro1|chr12 (38749307-38749747) | |
| 231-363, gnl|rheMac2|chr13 (37127986-37128428) | |
| 231-363, gnl|rn3|chr6_random (104885-104460) | |
| 503-618, gnl|bosTau2|chr11 (18748236-18748121) | |
| 503-618, gnl|canFam2|chr17 (32623372-32623726) | |
| 503-618, gnl|echTel1|scaffold_272278 (5916-6219) | |
| 503-618, gnl|hg17|chr2 (37278349-37278704) | |
| 503-618, gnl|Hg17|chr2 (37278551-37278436) | |
| 503-618, gnl|loxAfr1|scaffold_3365 (111847-112175) | |
| 503-618, gnl|mm7|chr17 (77171629-77171980) | |
| 503-618, gnl|Mm7|chr17 (77171823-77171708) | |
| 503-618, gnl|oryCun1|scaffold_177377 (7410-7753) | |
| 503-618, gnl|panTro1|chr12 (38742242-38742597) | |
| 503-618, gnl|rheMac2|chr13 (37121009-37121359) | |
| 503-618, gnl|rn3|chr6_random (108653-108291) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 231-363, gnl|bosTau2|chr11 (18752599-18752467) | |
| 231-363, gnl|canFam2|chr17 (32627081-32627480) | |
| 231-363, gnl|dasNov1|scaffold_11249 (65043-65473) | |
| 231-363, gnl|echTel1|scaffold_272278 (9937-10409) | |
| 231-363, gnl|hg17|chr2 (37285383-37285822) | |
| 231-363, gnl|Hg17|chr2 (37285769-37285637) | |
| 231-363, gnl|loxAfr1|scaffold_3365 (117888-118320) | |
| 231-363, gnl|mm7|chr17 (77176546-77176912) | |
| 231-363, gnl|Mm7|chr17 (77176858-77176726) | |
| 231-363, gnl|monDom2|scaffold_1 (134735306-134734902) | |
| 231-363, gnl|oryCun1|scaffold_80984 (4436-4008) | |
| 231-363, gnl|panTro1|chr12 (38749307-38749747) | |
| 231-363, gnl|rheMac2|chr13 (37127986-37128428) | |
| 231-363, gnl|rn3|chr6_random (104885-104460) | |
| 503-618, gnl|bosTau2|chr11 (18748236-18748121) | |
| 503-618, gnl|canFam2|chr17 (32623372-32623726) | |
| 503-618, gnl|echTel1|scaffold_272278 (5916-6219) | |
| 503-618, gnl|hg17|chr2 (37278349-37278704) | |
| 503-618, gnl|Hg17|chr2 (37278551-37278436) | |
| 503-618, gnl|loxAfr1|scaffold_3365 (111847-112175) | |
| 503-618, gnl|mm7|chr17 (77171629-77171980) | |
| 503-618, gnl|Mm7|chr17 (77171823-77171708) | |
| 503-618, gnl|oryCun1|scaffold_177377 (7410-7753) | |
| 503-618, gnl|panTro1|chr12 (38742242-38742597) | |
| 503-618, gnl|rheMac2|chr13 (37121009-37121359) | |
| 503-618, gnl|rn3|chr6_random (108653-108291) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cty (0.20816) | |
| nje (0.16592) | |
| eep (0.122564) | |
| cbl (0.114797) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| nje (0.16592) | |
| eep (0.122564) | |
| cbl (0.114797) |