Non-Coding RNA Search

Ss1.1-Pig4-TMW8049B07.5

Sequence:


               
               CCCACGCGTCCGCAGTGTGCGGCGCCAGCGGCTTGTGCAAAACCAACTGTGGCGTGTGCT
GCAAGGCCGAGCTGGGCCTGGCGCCGTCTGCGCTGCCCGCGGGCAGGGTCATCAAGCCGC
AGGTCATCAACCAGGCAGTGGGGCTTCCGGCCAGTGGCTCGCTCTACTACTTCAACTACC
TGGACTCTGCTGCGTACCAGCCATCTGAGCTCCTCTTCCCGTCTGGCCTCCTCAATGCAC
AGGCCCCCGCCGCCCTGGCTGCCCACCCCAAGCTCTTTTTGCTGGAGAACGCCAAGTTAG
CTGGCCTGGCCGCGGACAAGTTCCCCCATCCGGCCCCCTATGCCCATAAGGAGCGCTTGC
CCGCGCCGCTAGAGCAGGTGCTGAAGGAGAACTCAGCCCTGACCGCTGAGCGCAGTGGCG
TCAAGGGCCACAGCAAGCTGCCCGGGGGCTCTGCGGACGGCAAGCCCAAAAACTTCACCT
GCGAGGTGTGCGGCAAGGTATTTAACGCTCACTATAACCTCACCCGCCACATGCCGGTCC
ACACCGGAGCCAGACCGTTCGTGTGCAAAGTCTGCGGCAAAGGCTTCCGCCAGGCCAGCA
CGCTCTGCAGACACAAAATTATCCACACGCAGGAAAAGCCGCATAAATGCAACCAGTGCG
GTAAAGCCTTCAACCGCAGCTCCACGCTCAACACGCACATCCGCATCCACGCGGGCTACA
AGCCCTTCGTCTGCGAATTTTGTGGCAAAGGCTTTCACCAAAAAGGGAACTACAAGAACC
ATAAACTGACTCACAGCGGCGAGAAGCAGTACAAATGCACCATCTGCAACAAGGCCTTCC
ACCAGGTCTACAACCTGACCTTCCACATGCACACCCACAACGACAAGAAGCCTTTCACGT
GCGCCACTTGCGGCAAAGGGTTTTGCAGAAACTTTGACTTAAAGAAACACGTGCGCAAAC
TCCACGACAGCGTGGGCCCCGCTGCCCCCTCCACAAAGGACCTGACTCGGACAGTGCAGA
GCTGAGAGCTACTGCCTCGCCCTCCCTTCCAGCCCCATCCAACCCCCAAACAGATCACAC
GTATAAACTTATTTCTAAAATTAAAAGAAAGGAAAAAAAAAAAGCTATAGCAGAGAGGCT
AAAATCTATTTATCGAAACCAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACGCGTCCGCAGTGTGCGGCGCCAGCGGCTTGTGCAAAACCAACTGTGGCGTGTGCT
GCAAGGCCGAGCTGGGCCTGGCGCCGTCTGCGCTGCCCGCGGGCAGGGTCATCAAGCCGC
AGGTCATCAACCAGGCAGTGGGGCTTCCGGCCAGTGGCTCGCTCTACTACTTCAACTACC
TGGACTCTGCTGCGTACCAGCCATCTGAGCTCCTCTTCCCGTCTGGCCTCCTCAATGCAC
AGGCCCCCGCCGCCCTGGCTGCCCACCCCAAGCTCTTTTTGCTGGAGAACGCCAAGTTAG
CTGGCCTGGCCGCGGACAAGTTCCCCCATCCGGCCCCCTATGCCCATAAGGAGCGCTTGC
CCGCGCCGCTAGAGCAGGTGCTGAAGGAGAACTCAGCCCTGACCGCTGAGCGCAGTGGCG
TCAAGGGCCACAGCAAGCTGCCCGGGGGCTCTGCGGACGGCAAGCCCAAAAACTTCACCT
GCGAGGTGTGCGGCAAGGTATTTAACGCTCACTATAACCTCACCCGCCACATGCCGGTCC
ACACCGGAGCCAGACCGTTCGTGTGCAAAGTCTGCGGCAAAGGCTTCCGCCAGGCCAGCA
CGCTCTGCAGACACAAAATTATCCACACGCAGGAAAAGCCGCATAAATGCAACCAGTGCG
GTAAAGCCTTCAACCGCAGCTCCACGCTCAACACGCACATCCGCATCCACGCGGGCTACA
AGCCCTTCGTCTGCGAATTTTGTGGCAAAGGCTTTCACCAAAAAGGGAACTACAAGAACC
ATAAACTGACTCACAGCGGCGAGAAGCAGTACAAATGCACCATCTGCAACAAGGCCTTCC
ACCAGGTCTACAACCTGACCTTCCACATGCACACCCACAACGACAAGAAGCCTTTCACGT
GCGCCACTTGCGGCAAAGGGTTTTGCAGAAACTTTGACTTAAAGAAACACGTGCGCAAAC
TCCACGACAGCGTGGGCCCCGCTGCCCCCTCCACAAAGGACCTGACTCGGACAGTGCAGA
GCTGAGAGCTACTGCCTCGCCCTCCCTTCCAGCCCCATCCAACCCCCAAACAGATCACAC
GTATAAACTTATTTCTAAAATTAAAAGAAAGGAAAAAAAAAAAGCTATAGCAGAGAGGCT
AAAATCTATTTATCGAAACCAGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50754497|ref|XP_414411.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50754497|ref|XP_414411.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               832-955, - strand, RNAz p=0.998398

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               832-955, - strand, RNAz p=0.998398

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               473-955, gnl|bosTau2|chr21 (12659177-12659659)
               


               
               479-933, gnl|bosTau2|chr17 (44467708-44468162)
               

               
               479-933, gnl|Hg17|chr16 (30523719-30523349)
               


               
               480-931, gnl|bosTau2|chr14 (680576-681028)
               

               
               480-931, gnl|Hg17|chr8 (144803978-144804430)
               

               
               480-931, gnl|Mm7|chr11 (70853538-70853990)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               473-955, gnl|bosTau2|chr21 (12659177-12659659)
               


               
               479-933, gnl|bosTau2|chr17 (44467708-44468162)
               

               
               479-933, gnl|Hg17|chr16 (30523719-30523349)
               


               
               480-931, gnl|bosTau2|chr14 (680576-681028)
               

               
               480-931, gnl|Hg17|chr8 (144803978-144804430)
               

               
               480-931, gnl|Mm7|chr11 (70853538-70853990)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	473-955, gnl\|bosTau2\|chr21 (12659177-12659659)

	479-933, gnl\|bosTau2\|chr17 (44467708-44468162)
	479-933, gnl\|Hg17\|chr16 (30523719-30523349)

	480-931, gnl\|bosTau2\|chr14 (680576-681028)
	480-931, gnl\|Hg17\|chr8 (144803978-144804430)
	480-931, gnl\|Mm7\|chr11 (70853538-70853990)