Non-Coding RNA Search

Ss1.1-Pig4-TMW8049B11.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTAAGTATTTTATTTA
TCATTGAAGAAAAAACACAGCAGCAAGTTCTGTGTTGGCTTCAATAAAACCAAACAGTTA
ATCTTTAACATTGCGACTACACTCCAAAATTGAAGTCAACACAGTCATTACTACGAATTA
CTTGTGGAAAGAATCTATCCTGAAGAGAAAGGAAAATTAGGAAAAAAGAATTTAAACAAT
TCCTCCAAACCAGACATTTATAAATATTGTCATATTTAAAATGTTTCAAAGGCATGAAAT
CTCCATAAATGGAAAAGCAGTTGGCTATTGGCAACAGAAAAAAACTCAGCAATAGGTTTA
CCAAACGCTTTAAAATTTAAAAGCTGTATCAGTTTTGGATTCACACTTAAGCAATATTCT
TGTCATTACAATGACTGCAAATTGCTTTATACTCACCTTCTCTCAAGTAAAATCTACAGA
AAAATCTCACTGTATCCCATGTGTGTAATGGTTACCGCACTTATAGTAAAGCCTAAAAAC
TTTCCAAATTTAGCAAATAGGAAATACCTCAAAATAACTAGAGGTATGTCTCAACCACTA
ATGGTGTGAAAATGTTTCAGCTCCCTCCTTAGCCTTCAAATACATTTTCTATAACAGAAC
CTTACTTCATTCCAAATTAATATCAGATATTTCAAAATCAAAAGAAAAAAGATCAGTTCT
ATAACCAAGGTACAGGTGTTACTGAATACCTGAAGAATTCACATTTTATTTTTTAGTTTT
TCTTTTTTGTAAACAAATGATTGATGAAATAATGCAACACCTTAAATCCCCAAAAAATGG
CATGGTTTTCCAACCTTCTGTGGATAACAGTGCATGATCAATCTATTATATAGGATTAAT
ACAAGTTCATGCTTTTTGTGTTATGGTGAGACAACATTAAAGAATCCAATTCAGATTGGT
TGAAGCACAAGTATAATAATCCTTGAATGTGACCAAACCTATGTAAGACACAAGTTTGAA
TCTTGAAGCTTAGCGTCGTACTGTGGTCCACCCATCCTCATCAGTCTCATTTTTAGTACG
ACGGAGAGACTCCCTATCTTTGTCAGCTCTCCAGGAGGTCTTCTCTTTTTCACCGTCTCT
TTCTCGGTCTCGATCTCGATCTCTTTCTCGATCTCTCGAAAGAGCTGGGGGAGGAACTCG
ACGAGGGGCATCCCGCTCTTCCGCCCGGTCATCCTTCCTGTCATCAGCGCGTCTCCAAGA
ACTTACTTCCTCGCGCTCTGATCTGAGAGGAGGCCCTCTTCGGTCTCGGTCATCTCGTCT
TTCTCTTAGATCTCGGCGATCATCACGACGGCGGTCATCTCGATCCCTATCGTCACGACG
ACTCGCATCTCTCCAGCTTGAGGATTCCTCAGCTGGTCCTCTTCTCCAGCCACCTTCATC
CCTTGGTCGTCTGAAGCGATCCTCTCGATCCCCATCTCTGTCTCTGTCCCTCTCTCTGTC
CCTCTCTCTGTCTCTGTCCCGCTCAGGCTCCCTTTCGTTCTCATCACGATCTTGATTATC
TCGGTCTCTCTCTTTTTCCCTATCCCATTCACGGTCTTCTGAGGGTCTGGATTCCCGAGG
TGGACCCCAACTTTCTTCTCTGGCTCTTTCTTTCTCTCTCCATCCACCTGGCTTGACAAA
GGGTCTCCAGGGACCAGGTCTTGAGTCATCACCCCTCCTGGGAATCCGATCGTCGTCACC
CCTCCTGGGAATCCGATCGTCATCCATGTTTCTCCAAGGCCCCCTGTCATCATCTGCACC
GCGCCTGGAAATTCTATCATCATCGGTATTCCTCCAAGGTCCTCGATCGTCATCCAACCC
TCGCCTGGGACCCCGGTCATCATCCATGCCCCTCCTGGGACCCCGGTCATCATCCATGCC
CCGCCGGGGACCCCGGTCATCATCCATGCCCCGCCGGGGACGATCGTCGTCAGCATTCCG
CCAGGATGACCGCTCATCATCCACACCTCCTCGCCGAGGCCCCCGGTCCTCGTCCATCCC
ACGTCTGGGTCCTCTGTCCTCATCAGCTGTTCGCCAGCTTCCTCTGTCCTCGTCCAGTCC
TCGTCTAGGTGGTCTGTCGTCATCTGCATGACGCCAGCTTCCCCTGTCTTCATCACCGAT
TCTTCTGGGAGGCCTGTCGTCGTCTGTGTTACGCCAGGAAGGCCGGTCATCGTCTGCCCC
TCGGCGAGAGAACCGATCTTCATCAAGACCACGTCTTGGGCCTCGGTCATCATCCATGCC
CCGCCGCGGACCCCGATCTTCGTCTGGTCTGAGGGAGGACTCTCTCTCTTCGTCATCCCC
CAAACGCCTTGGCCGATCATCGTCTCTTCTGTGAGGCCTCTCTTCATCCCGCCCTTCTCC
ACGTCTCCAATCTTTTTCCGGTGGGCCTCTTCTCCACTCAGAATCTATTTCAGGTCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTAAGTATTTTATTTA
TCATTGAAGAAAAAACACAGCAGCAAGTTCTGTGTTGGCTTCAATAAAACCAAACAGTTA
ATCTTTAACATTGCGACTACACTCCAAAATTGAAGTCAACACAGTCATTACTACGAATTA
CTTGTGGAAAGAATCTATCCTGAAGAGAAAGGAAAATTAGGAAAAAAGAATTTAAACAAT
TCCTCCAAACCAGACATTTATAAATATTGTCATATTTAAAATGTTTCAAAGGCATGAAAT
CTCCATAAATGGAAAAGCAGTTGGCTATTGGCAACAGAAAAAAACTCAGCAATAGGTTTA
CCAAACGCTTTAAAATTTAAAAGCTGTATCAGTTTTGGATTCACACTTAAGCAATATTCT
TGTCATTACAATGACTGCAAATTGCTTTATACTCACCTTCTCTCAAGTAAAATCTACAGA
AAAATCTCACTGTATCCCATGTGTGTAATGGTTACCGCACTTATAGTAAAGCCTAAAAAC
TTTCCAAATTTAGCAAATAGGAAATACCTCAAAATAACTAGAGGTATGTCTCAACCACTA
ATGGTGTGAAAATGTTTCAGCTCCCTCCTTAGCCTTCAAATACATTTTCTATAACAGAAC
CTTACTTCATTCCAAATTAATATCAGATATTTCAAAATCAAAAGAAAAAAGATCAGTTCT
ATAACCAAGGTACAGGTGTTACTGAATACCTGAAGAATTCACATTTTATTTTTTAGTTTT
TCTTTTTTGTAAACAAATGATTGATGAAATAATGCAACACCTTAAATCCCCAAAAAATGG
CATGGTTTTCCAACCTTCTGTGGATAACAGTGCATGATCAATCTATTATATAGGATTAAT
ACAAGTTCATGCTTTTTGTGTTATGGTGAGACAACATTAAAGAATCCAATTCAGATTGGT
TGAAGCACAAGTATAATAATCCTTGAATGTGACCAAACCTATGTAAGACACAAGTTTGAA
TCTTGAAGCTTAGCGTCGTACTGTGGTCCACCCATCCTCATCAGTCTCATTTTTAGTACG
ACGGAGAGACTCCCTATCTTTGTCAGCTCTCCAGGAGGTCTTCTCTTTTTCACCGTCTCT
TTCTCGGTCTCGATCTCGATCTCTTTCTCGATCTCTCGAAAGAGCTGGGGGAGGAACTCG
ACGAGGGGCATCCCGCTCTTCCGCCCGGTCATCCTTCCTGTCATCAGCGCGTCTCCAAGA
ACTTACTTCCTCGCGCTCTGATCTGAGAGGAGGCCCTCTTCGGTCTCGGTCATCTCGTCT
TTCTCTTAGATCTCGGCGATCATCACGACGGCGGTCATCTCGATCCCTATCGTCACGACG
ACTCGCATCTCTCCAGCTTGAGGATTCCTCAGCTGGTCCTCTTCTCCAGCCACCTTCATC
CCTTGGTCGTCTGAAGCGATCCTCTCGATCCCCATCTCTGTCTCTGTCCCTCTCTCTGTC
CCTCTCTCTGTCTCTGTCCCGCTCAGGCTCCCTTTCGTTCTCATCACGATCTTGATTATC
TCGGTCTCTCTCTTTTTCCCTATCCCATTCACGGTCTTCTGAGGGTCTGGATTCCCGAGG
TGGACCCCAACTTTCTTCTCTGGCTCTTTCTTTCTCTCTCCATCCACCTGGCTTGACAAA
GGGTCTCCAGGGACCAGGTCTTGAGTCATCACCCCTCCTGGGAATCCGATCGTCGTCACC
CCTCCTGGGAATCCGATCGTCATCCATGTTTCTCCAAGGCCCCCTGTCATCATCTGCACC
GCGCCTGGAAATTCTATCATCATCGGTATTCCTCCAAGGTCCTCGATCGTCATCCAACCC
TCGCCTGGGACCCCGGTCATCATCCATGCCCCTCCTGGGACCCCGGTCATCATCCATGCC
CCGCCGGGGACCCCGGTCATCATCCATGCCCCGCCGGGGACGATCGTCGTCAGCATTCCG
CCAGGATGACCGCTCATCATCCACACCTCCTCGCCGAGGCCCCCGGTCCTCGTCCATCCC
ACGTCTGGGTCCTCTGTCCTCATCAGCTGTTCGCCAGCTTCCTCTGTCCTCGTCCAGTCC
TCGTCTAGGTGGTCTGTCGTCATCTGCATGACGCCAGCTTCCCCTGTCTTCATCACCGAT
TCTTCTGGGAGGCCTGTCGTCGTCTGTGTTACGCCAGGAAGGCCGGTCATCGTCTGCCCC
TCGGCGAGAGAACCGATCTTCATCAAGACCACGTCTTGGGCCTCGGTCATCATCCATGCC
CCGCCGCGGACCCCGATCTTCGTCTGGTCTGAGGGAGGACTCTCTCTCTTCGTCATCCCC
CAAACGCCTTGGCCGATCATCGTCTCTTCTGTGAGGCCTCTCTTCATCCCGCCCTTCTCC
ACGTCTCCAATCTTTTTCCGGTGGGCCTCTTCTCCACTCAGAATCTATTTCAGGTCCTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q15778_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q15778_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               79-189, - strand, RNAz p=0.99557
               

               
               810-1200, - strand, RNAz p=0.918126

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-189, - strand, RNAz p=0.99557
               

               
               810-1200, - strand, RNAz p=0.918126

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               79-189, DB814475 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB814475.1|), blast E-value=0, identity=100% 
               

               
               79-189, POSM0100004_E09 porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|BM189966.1|), blast E-value=0, identity=100% 
               

               
               79-189, POSM0605009_E24R porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV898598.1|), blast E-value=0, identity=100% 
               

               
               79-189, POSM0605017_C06R porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV901142.1|), blast E-value=0, identity=100% 
               

               
               79-183, 1607203 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY466391.1|), 
blast E-value=2e-39, identity=95.24% 
               

               
               79-189, PADT0811002_M07F porcine adipose tissue cDNA library (PADT) Sus 
(gb|EB412065.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               79-189, DB814475 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB814475.1|), blast E-value=0, identity=100% 
               

               
               79-189, POSM0100004_E09 porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|BM189966.1|), blast E-value=0, identity=100% 
               

               
               79-189, POSM0605009_E24R porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV898598.1|), blast E-value=0, identity=100% 
               

               
               79-189, POSM0605017_C06R porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV901142.1|), blast E-value=0, identity=100% 
               

               
               79-183, 1607203 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY466391.1|), 
blast E-value=2e-39, identity=95.24% 
               

               
               79-189, PADT0811002_M07F porcine adipose tissue cDNA library (PADT) Sus 
(gb|EB412065.1|), blast E-value=0, identity=100%

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_003750, -
               

               
               5' of NM_003750, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003750, -
               

               
               5' of NM_003750, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               41-1268, gnl|bosTau2|chr26 (26127939-26126724)
               

               
               41-1268, gnl|Hg17|chr10 (120784547-120785780)
               

               
               41-1268, gnl|Mm7|chr19 (60683830-60685015)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-1268, gnl|bosTau2|chr26 (26127939-26126724)
               

               
               41-1268, gnl|Hg17|chr10 (120784547-120785780)
               

               
               41-1268, gnl|Mm7|chr19 (60683830-60685015)

Expressed library(ies): 51 entry(ies)

More info

Expressed library(ies): 51 entry(ies)

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               kid (0.648677)
               

               
               fat (0.58971)
               

               
               pro (0.512033)
               

               
               lun (0.451467)
               

               
               spl (0.429553)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               fco (0.314416)
               

               
               cty (0.31224)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               cbl (0.229595)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 51 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.648677)
               

               
               fat (0.58971)
               

               
               pro (0.512033)
               

               
               lun (0.451467)
               

               
               spl (0.429553)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               fco (0.314416)
               

               
               cty (0.31224)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               cbl (0.229595)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	79-189, - strand, RNAz p=0.99557
	810-1200, - strand, RNAz p=0.918126

	79-189, DB814475 full-length enriched swine cDNA library, adult ovary Sus (dbj\|DB814475.1\|), blast E-value=0, identity=100%
	79-189, POSM0100004_E09 porcine skeletal muscle cDNA library (PoSM) Sus (gb\|BM189966.1\|), blast E-value=0, identity=100%
	79-189, POSM0605009_E24R porcine skeletal muscle cDNA library (PoSM) Sus (gb\|DV898598.1\|), blast E-value=0, identity=100%
	79-189, POSM0605017_C06R porcine skeletal muscle cDNA library (PoSM) Sus (gb\|DV901142.1\|), blast E-value=0, identity=100%
	79-183, 1607203 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb\|DY466391.1\|), blast E-value=2e-39, identity=95.24%
	79-189, PADT0811002_M07F porcine adipose tissue cDNA library (PADT) Sus (gb\|EB412065.1\|), blast E-value=0, identity=100%

	41-1268, gnl\|bosTau2\|chr26 (26127939-26126724)
	41-1268, gnl\|Hg17\|chr10 (120784547-120785780)
	41-1268, gnl\|Mm7\|chr19 (60683830-60685015)

	kid (0.648677)
	fat (0.58971)
	pro (0.512033)
	lun (0.451467)
	spl (0.429553)
	ret (0.3862)
	tra (0.369276)
	fco (0.314416)
	cty (0.31224)
	liv (0.292569)
	lin (0.291206)
	lnt (0.284616)
	cst (0.280073)
	fce (0.271592)
	ste (0.270416)
	bla (0.248694)
	pgl (0.236967)
	ecc (0.23007)
	cbl (0.229595)
	hea (0.204499)
	aor (0.195274)
	col (0.195008)
	sag (0.182715)
	sto (0.179824)
	fty (0.17584)
	ton (0.1755)
	fbs (0.175346)
	eye (0.170503)
	fhi (0.169578)
	cje (0.165235)
	nco (0.161734)
	mga (0.160205)
	tbr (0.154178)
	eli (0.151814)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	ssp (0.13552)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	ese (0.126502)
	ebs (0.118301)
	med (0.116252)
	spc (0.113366)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)