Non-Coding RNA Search

Ss1.1-Pig4-TMW8049B16.5

Sequence:


               
               AAATTTTATCTTTTAAGAAAGCTTATTTTTAACATAGCCTTTAGTATGGAGGGTTTGTAG
ATATTGTAAAGTTTGTAAAATTGTATTTGAAATGTCAGTGTATTTACTGCCTTTGTAACA
TTGTAAAATACTAGAAAAATGGATTTCAATTATTTTTAATAACTTTCAAAAACTGTGTCA
TTTGTTTTGGTTTTGGTTTATGTCCAGTTGAAAATGTATCATTTGAAACACTTAAACTAA
TTTTTTGATATTTAACAATCTTATAGATTTGTATGAGAGTCAACTCACTGAGTTGTAACA
TCACATAGAAATGTCCAATTTTGGCTTTTGTTAAAGTACTGACCAGTTGAAACCTCTTGA
ATCATGTAATAGTACTAACAAACTAGAAACTGACCATCTGTTTTTATGTTGATTCAACAC
TCCAAATACAGATTGAATGTCTAACTCCTAATCATTCACATGTAAATTTTTTATTTCTAG
GGTGCCTATTTATTTTTGTAAATGTTCTGGTTATACATTTATTATGATAACTTTAAGTAG
TATAAGCAACAATTGTTGTAATGTTCAAAATACTCATCTCTAGAGTATTTTCATTTGAAG
TCAATTTCTTCTGGTTCAAAATTTTGTGGGAATAAACTGATTTTTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTTTATCTTTTAAGAAAGCTTATTTTTAACATAGCCTTTAGTATGGAGGGTTTGTAG
ATATTGTAAAGTTTGTAAAATTGTATTTGAAATGTCAGTGTATTTACTGCCTTTGTAACA
TTGTAAAATACTAGAAAAATGGATTTCAATTATTTTTAATAACTTTCAAAAACTGTGTCA
TTTGTTTTGGTTTTGGTTTATGTCCAGTTGAAAATGTATCATTTGAAACACTTAAACTAA
TTTTTTGATATTTAACAATCTTATAGATTTGTATGAGAGTCAACTCACTGAGTTGTAACA
TCACATAGAAATGTCCAATTTTGGCTTTTGTTAAAGTACTGACCAGTTGAAACCTCTTGA
ATCATGTAATAGTACTAACAAACTAGAAACTGACCATCTGTTTTTATGTTGATTCAACAC
TCCAAATACAGATTGAATGTCTAACTCCTAATCATTCACATGTAAATTTTTTATTTCTAG
GGTGCCTATTTATTTTTGTAAATGTTCTGGTTATACATTTATTATGATAACTTTAAGTAG
TATAAGCAACAATTGTTGTAATGTTCAAAATACTCATCTCTAGAGTATTTTCATTTGAAG
TCAATTTCTTCTGGTTCAAAATTTTGTGGGAATAAACTGATTTTTAAT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               2-648, gnl|bosTau2|chr6 (3063280-3063927)
               

               
               2-648, gnl|canFam2|chr32 (41134528-41135084)
               

               
               2-648, gnl|dasNov1|scaffold_118187 (2484-1944)
               

               
               2-648, gnl|echTel1|scaffold_257705 (10234-10783)
               

               
               2-648, gnl|hg17|chr4 (120573552-120574123)
               

               
               2-648, gnl|Hg17|chr4 (120573623-120574277)
               

               
               2-648, gnl|mm7|chr3 (122771078-122770566)
               

               
               2-648, gnl|Mm7|chr3 (122771022-122770430)
               

               
               2-648, gnl|monDom2|scaffold_32 (8023030-8022447)
               

               
               2-648, gnl|panTro1|chr3 (137174193-137174748)
               

               
               2-648, gnl|rheMac2|chr5 (111869751-111870320)
               

               
               2-648, gnl|rn3|chr2 (219584237-219583714)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-648, gnl|bosTau2|chr6 (3063280-3063927)
               

               
               2-648, gnl|canFam2|chr32 (41134528-41135084)
               

               
               2-648, gnl|dasNov1|scaffold_118187 (2484-1944)
               

               
               2-648, gnl|echTel1|scaffold_257705 (10234-10783)
               

               
               2-648, gnl|hg17|chr4 (120573552-120574123)
               

               
               2-648, gnl|Hg17|chr4 (120573623-120574277)
               

               
               2-648, gnl|mm7|chr3 (122771078-122770566)
               

               
               2-648, gnl|Mm7|chr3 (122771022-122770430)
               

               
               2-648, gnl|monDom2|scaffold_32 (8023030-8022447)
               

               
               2-648, gnl|panTro1|chr3 (137174193-137174748)
               

               
               2-648, gnl|rheMac2|chr5 (111869751-111870320)
               

               
               2-648, gnl|rn3|chr2 (219584237-219583714)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               bfe (0.149858)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)
               

               
               nmm (0.132802)

	2-648, gnl\|bosTau2\|chr6 (3063280-3063927)
	2-648, gnl\|canFam2\|chr32 (41134528-41135084)
	2-648, gnl\|dasNov1\|scaffold_118187 (2484-1944)
	2-648, gnl\|echTel1\|scaffold_257705 (10234-10783)
	2-648, gnl\|hg17\|chr4 (120573552-120574123)
	2-648, gnl\|Hg17\|chr4 (120573623-120574277)
	2-648, gnl\|mm7\|chr3 (122771078-122770566)
	2-648, gnl\|Mm7\|chr3 (122771022-122770430)
	2-648, gnl\|monDom2\|scaffold_32 (8023030-8022447)
	2-648, gnl\|panTro1\|chr3 (137174193-137174748)
	2-648, gnl\|rheMac2\|chr5 (111869751-111870320)
	2-648, gnl\|rn3\|chr2 (219584237-219583714)