Non-Coding RNA Search

Ss1.1-Pig4-TMW8049C08.5

Sequence:


               
               CGAACACACACACACATTAAACAGGTCGTCTCATCGCATCTACTTTCCATCTACCCATCA
AGAGACCATTTTATGATACGCGTTAAGAGAACCCTTTTTCAGACAAACTGCAGACTCCGC
CGCCAGTGGCGGGGTTGTTGGGGCGGCCCCGGGGTCGCTGCCCGGTCCTCTGCATGCTCT
GTCGTACGGACAGCTGACTTAGTTCTGTGTCCATGTGGCCCCTGCCGCCTCAGCCACATC
AAGTCTCCTAGAACATTGTGGAATCTAAACTGCACTTGTAGCTCTCATTTCCTTCCAGTA
CTGATCACGATTCCAGGGCGCCAACTGTGAAAGGGGCCTCGGGGAGAGCAGGCGGGGTGG
GCTGGCCTGGGGTGGGGGAAACGGCACCCGTGCCCCCTCCCTCGAGGCGCGGTGGCCGAG
ATGCAGCGGAGGCCCGGGGGCGGGGGGTAAGGGCAGCCAGCGCTTGGCCCCTGGGTGGCC
TCCTTGAGGCCTCTGGCTTCGCCAGCCGTCGCCCTGCTTCCGGAGCAGAAGTTAGGGGAC
TTGCCTTGCCTCCTCCGGCGCCACCCAGGCTCTCATGCTGACCTTGCAAATTCAGCCGCT
GCTTTGAGCCCAAAGTGGGAATATTGGTTTTGTGTCCAAGACTTGTTCCAAGTTTGTCAG
TGAGGTTGACAGAACGTCGAGCGCAGATGCCACCTGCCTGAGTGTTGACATGCCAGTGGA
TGTGACTCCTTTTTCGTTTCTCCTTTCCCTCCCCTTGGGACAGTGTTAGAGTGAACATTT
AGCATCTGTTTTTGGTTGATAGTTAATCAAACTGACATTACAGAAAGTGCCTTAGACACT
ACAGTACTAAGACAATGTTAAATCTATGATTTGCCTCTGTAACAGTTTAACGTATTAAGT
TTTGACTGTGCTCATATCATGTACCTCTCTAGTCCAAGTGGTATTATAAACATTCAGTGA
CAACGAATCAGTGTTCATTATAAATCCTCCGCAACGTGCTTGAAAACACAAACCTTTTGG
GTTGAAAGCTTTAACATCCGGTAGGAAGACTCTGTCACGTGGGTTTGGAATCTTTGATTT
TCCCCTTTATGAATTGTACTGGCTGTTGACCACCAGACACCTGACTGCAAATATCTTTTC
TTGTATTCCCATATTTCTAGACAATGATTTTTGTAAGACAATAAATTTATTCATTATAGA
TAAAAAAAAAAACTCTGTTTACTTGGAGGACAAAGCACCCGTTGAGAATAAACAGACCTC
AATAAACAAGCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAACACACACACACATTAAACAGGTCGTCTCATCGCATCTACTTTCCATCTACCCATCA
AGAGACCATTTTATGATACGCGTTAAGAGAACCCTTTTTCAGACAAACTGCAGACTCCGC
CGCCAGTGGCGGGGTTGTTGGGGCGGCCCCGGGGTCGCTGCCCGGTCCTCTGCATGCTCT
GTCGTACGGACAGCTGACTTAGTTCTGTGTCCATGTGGCCCCTGCCGCCTCAGCCACATC
AAGTCTCCTAGAACATTGTGGAATCTAAACTGCACTTGTAGCTCTCATTTCCTTCCAGTA
CTGATCACGATTCCAGGGCGCCAACTGTGAAAGGGGCCTCGGGGAGAGCAGGCGGGGTGG
GCTGGCCTGGGGTGGGGGAAACGGCACCCGTGCCCCCTCCCTCGAGGCGCGGTGGCCGAG
ATGCAGCGGAGGCCCGGGGGCGGGGGGTAAGGGCAGCCAGCGCTTGGCCCCTGGGTGGCC
TCCTTGAGGCCTCTGGCTTCGCCAGCCGTCGCCCTGCTTCCGGAGCAGAAGTTAGGGGAC
TTGCCTTGCCTCCTCCGGCGCCACCCAGGCTCTCATGCTGACCTTGCAAATTCAGCCGCT
GCTTTGAGCCCAAAGTGGGAATATTGGTTTTGTGTCCAAGACTTGTTCCAAGTTTGTCAG
TGAGGTTGACAGAACGTCGAGCGCAGATGCCACCTGCCTGAGTGTTGACATGCCAGTGGA
TGTGACTCCTTTTTCGTTTCTCCTTTCCCTCCCCTTGGGACAGTGTTAGAGTGAACATTT
AGCATCTGTTTTTGGTTGATAGTTAATCAAACTGACATTACAGAAAGTGCCTTAGACACT
ACAGTACTAAGACAATGTTAAATCTATGATTTGCCTCTGTAACAGTTTAACGTATTAAGT
TTTGACTGTGCTCATATCATGTACCTCTCTAGTCCAAGTGGTATTATAAACATTCAGTGA
CAACGAATCAGTGTTCATTATAAATCCTCCGCAACGTGCTTGAAAACACAAACCTTTTGG
GTTGAAAGCTTTAACATCCGGTAGGAAGACTCTGTCACGTGGGTTTGGAATCTTTGATTT
TCCCCTTTATGAATTGTACTGGCTGTTGACCACCAGACACCTGACTGCAAATATCTTTTC
TTGTATTCCCATATTTCTAGACAATGATTTTTGTAAGACAATAAATTTATTCATTATAGA
TAAAAAAAAAAACTCTGTTTACTTGGAGGACAAAGCACCCGTTGAGAATAAACAGACCTC
AATAAACAAGCAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               790-909, - strand, RNAz p=0.890573

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               790-909, - strand, RNAz p=0.890573

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               3-365, gnl|bosTau2|chr2 (77851720-77851355)
               

               
               3-365, gnl|Hg17|chr17 (8319646-8319278)
               

               
               3-365, gnl|Mm7|chr11 (68896853-68897222)
               


               
               520-1275, gnl|bosTau2|chr2 (77851163-77850406)
               

               
               520-1275, gnl|Hg17|chr17 (8319019-8318264)
               

               
               520-1275, gnl|Mm7|chr11 (68897433-68898191)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-365, gnl|bosTau2|chr2 (77851720-77851355)
               

               
               3-365, gnl|Hg17|chr17 (8319646-8319278)
               

               
               3-365, gnl|Mm7|chr11 (68896853-68897222)
               


               
               520-1275, gnl|bosTau2|chr2 (77851163-77850406)
               

               
               520-1275, gnl|Hg17|chr17 (8319019-8318264)
               

               
               520-1275, gnl|Mm7|chr11 (68897433-68898191)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

Help | Less info


               
               gul (2.48624)
               

               
               cbe (1.19617)
               

               
               aor (1.17165)
               

               
               fce (0.543183)
               

               
               ova (0.387397)
               

               
               eru (0.360144)
               

               
               rec (0.346141)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (2.48624)
               

               
               cbe (1.19617)
               

               
               aor (1.17165)
               

               
               fce (0.543183)
               

               
               ova (0.387397)
               

               
               eru (0.360144)
               

               
               rec (0.346141)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	3-365, gnl\|bosTau2\|chr2 (77851720-77851355)
	3-365, gnl\|Hg17\|chr17 (8319646-8319278)
	3-365, gnl\|Mm7\|chr11 (68896853-68897222)

	520-1275, gnl\|bosTau2\|chr2 (77851163-77850406)
	520-1275, gnl\|Hg17\|chr17 (8319019-8318264)
	520-1275, gnl\|Mm7\|chr11 (68897433-68898191)

	gul (2.48624)
	cbe (1.19617)
	aor (1.17165)
	fce (0.543183)
	ova (0.387397)
	eru (0.360144)
	rec (0.346141)
	spc (0.340097)
	fco (0.314416)
	tes (0.207814)
	fcc (0.197785)
	fhi (0.169578)
	mga (0.160205)
	eli (0.151814)
	lun (0.150489)
	ski (0.146735)
	hlv (0.139256)
	nca (0.136874)
	ssp (0.13552)
	pla (0.133672)
	lyg (0.133103)
	ret (0.128733)
	sug (0.127291)
	eep (0.122564)
	ecc (0.115035)
	jca (0.11396)
	eje (0.0988338)