Ss1.1-Pig4-TMW8049C14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTGGAGCTTGGGAGGCGGCGGCCGCGCAGCGTGCAGAATTATAAGGCTGCCTGCAGAC ATTTGAAAAATGGCAACAAATGAAAGTATCAGCATCTTTAGTTCGGCATCCTTGGCTGTG GAGTATGTAGATTCACTTCTACCTGAGAATCCTCTGCAGGAACCATTTAAAAATGCTTGG AATTATATGTTGAACAATTATACAAAGTTCCAGATTGCAACGTGGGGATCCCTCATAGTT CATGAGGCCCTTTATTTCTTTTTCTGTTTACCTGGATTTTTGTTTCAATTTATACCTTAC ATGAAAAAGTACAAAATTCAGAAGGATAAACCAGAAACATGGGAAAACCAGTGGAAATGC TTTAAAGTACTTCTGTTTAATCACTTTTGTATCCAGTTTCCTTTGATTTGTGGAACTTAT TATTTTACGGAGTATTTCAGTATTCCTTACGATTGGGAAACAATGCCAAGATGGTACATG CTTTTGGCAAGATGCTTTGGCTGTGCTGTGATTGAGGATACCTGGCACTATTTCCTGCAT AGGCTCTTACACCACAAAAGAATATATAAATATATTCATAAAATTCATCATGAGTTTCAG GCTCCATTTGGGATGGAAGCTGAATATGCACACCCTCTGGAAACCCTAATTCTGGGAACT GGATTTTTCATTGGAATCATGCTGTTATGTGATCATGTTATTCTTCTTTGGGCCTGGGTG ACCGTTCGTTTGATAGAAACTATCGATGTCCATAGTGGTTATGACATCCCTCTCAACCCT TTACATCTCATCCCTTTCTATGCTGGTTCTCGTCACCATGACTTCCACCACATGAACTTC ATTGGAAACTATGCGTCGACATTTACATGGTGGGACAGAATTTTTGGAACAGACGCTCAA TATAATGCCTACAATGAAAAGAGGAAAAAGGCTGAGAAAAAGACTGAATAAAAACATCTC ACATAAACCTTCCCGAAGATACACATTTTCCTGAATTGAAGCTAGTAGCTAACATTGCTT CTGGGGAGCAGAAATAAACATGTCTCTTGGCTGCAAAGTGATCAAAAGAACATTAACAAC CTTTCATTATCTTCCTGGTGGGAACTTTTATATATTTAAGTAATTTCCATGAGGAAACTT TAAAGGACATGTTGCTAACCTTACAAAAAGGATTTAAGTAACGGAGTTTTAATCTATGTC TGTTCACCCAGTTGTACCAGAGACCTGAAGCAGAAATTGGTCTTTAAATCTTTTATATAT AGTGGCCACTTCAAGAACTCTTAGTAGTGGTGTCGGCCTCATATTGAACTTTAAACACTT TTGGAATTTCCTTAAAAATCAAATACCATGGGTTGACCTACACCAATCCATACAGTGTGA GTGAGGCTGCCGAATCCGAAATAGCCAACACCAAGAATTTCTACTCTTATCTGGAGCTGA CCAGTTTGAGGTGATTCTCTTTCTTCGAGGAGTCTTTTTGCAATATACTACTGTTATCTG TAAATTAAGGCATTTCCAAATTGATGTAAGAAGATTTTAGTCTACAGGTTTTCGGGTTAC TTGAATTTTTTTTAAATTGAGCTTTATTTCTGCTAACTACCCTTTTGTTTTTGTGTATCA ATTTTTCATTATACTTAAAGCTATATCTTGAGACTTTGTGAACTGACTTGCTGTATTTGC ACTTAAAGTTATTGAAATAAATGTGATTTTGTTTGATTAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTGGAGCTTGGGAGGCGGCGGCCGCGCAGCGTGCAGAATTATAAGGCTGCCTGCAGAC ATTTGAAAAATGGCAACAAATGAAAGTATCAGCATCTTTAGTTCGGCATCCTTGGCTGTG GAGTATGTAGATTCACTTCTACCTGAGAATCCTCTGCAGGAACCATTTAAAAATGCTTGG AATTATATGTTGAACAATTATACAAAGTTCCAGATTGCAACGTGGGGATCCCTCATAGTT CATGAGGCCCTTTATTTCTTTTTCTGTTTACCTGGATTTTTGTTTCAATTTATACCTTAC ATGAAAAAGTACAAAATTCAGAAGGATAAACCAGAAACATGGGAAAACCAGTGGAAATGC TTTAAAGTACTTCTGTTTAATCACTTTTGTATCCAGTTTCCTTTGATTTGTGGAACTTAT TATTTTACGGAGTATTTCAGTATTCCTTACGATTGGGAAACAATGCCAAGATGGTACATG CTTTTGGCAAGATGCTTTGGCTGTGCTGTGATTGAGGATACCTGGCACTATTTCCTGCAT AGGCTCTTACACCACAAAAGAATATATAAATATATTCATAAAATTCATCATGAGTTTCAG GCTCCATTTGGGATGGAAGCTGAATATGCACACCCTCTGGAAACCCTAATTCTGGGAACT GGATTTTTCATTGGAATCATGCTGTTATGTGATCATGTTATTCTTCTTTGGGCCTGGGTG ACCGTTCGTTTGATAGAAACTATCGATGTCCATAGTGGTTATGACATCCCTCTCAACCCT TTACATCTCATCCCTTTCTATGCTGGTTCTCGTCACCATGACTTCCACCACATGAACTTC ATTGGAAACTATGCGTCGACATTTACATGGTGGGACAGAATTTTTGGAACAGACGCTCAA TATAATGCCTACAATGAAAAGAGGAAAAAGGCTGAGAAAAAGACTGAATAAAAACATCTC ACATAAACCTTCCCGAAGATACACATTTTCCTGAATTGAAGCTAGTAGCTAACATTGCTT CTGGGGAGCAGAAATAAACATGTCTCTTGGCTGCAAAGTGATCAAAAGAACATTAACAAC CTTTCATTATCTTCCTGGTGGGAACTTTTATATATTTAAGTAATTTCCATGAGGAAACTT TAAAGGACATGTTGCTAACCTTACAAAAAGGATTTAAGTAACGGAGTTTTAATCTATGTC TGTTCACCCAGTTGTACCAGAGACCTGAAGCAGAAATTGGTCTTTAAATCTTTTATATAT AGTGGCCACTTCAAGAACTCTTAGTAGTGGTGTCGGCCTCATATTGAACTTTAAACACTT TTGGAATTTCCTTAAAAATCAAATACCATGGGTTGACCTACACCAATCCATACAGTGTGA GTGAGGCTGCCGAATCCGAAATAGCCAACACCAAGAATTTCTACTCTTATCTGGAGCTGA CCAGTTTGAGGTGATTCTCTTTCTTCGAGGAGTCTTTTTGCAATATACTACTGTTATCTG TAAATTAAGGCATTTCCAAATTGATGTAAGAAGATTTTAGTCTACAGGTTTTCGGGTTAC TTGAATTTTTTTTAAATTGAGCTTTATTTCTGCTAACTACCCTTTTGTTTTTGTGTATCA ATTTTTCATTATACTTAAAGCTATATCTTGAGACTTTGTGAACTGACTTGCTGTATTTGC ACTTAAAGTTATTGAAATAAATGTGATTTTGTTTGATTAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 195-314, - strand, RNAz p=0.64111 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 195-314, - strand, RNAz p=0.64111 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 36-325, gnl|bosTau2|chr17 (2007951-2007662) | |
| 36-325, gnl|Hg17|chr4 (166612094-166612383) | |
| 36-325, gnl|Mm7|chr8 (63147940-63147652) | |
| 473-601, gnl|bosTau2|chr17 (2001167-2001039) | |
| 473-601, gnl|canFam2|chr15 (64320707-64320840) | |
| 473-601, gnl|dasNov1|scaffold_49788 (4966-4852) | |
| 473-601, gnl|echTel1|scaffold_323127 (58006-58139) | |
| 473-601, gnl|fr1|chrUn (18875272-18875405) | |
| 473-601, gnl|galGal2|chr4 (24427518-24427651) | |
| 473-601, gnl|hg17|chr4 (166617409-166617542) | |
| 473-601, gnl|Hg17|chr4 (166617408-166617536) | |
| 473-601, gnl|loxAfr1|scaffold_27966 (35341-35208) | |
| 473-601, gnl|mm7|chr8 (63142621-63142488) | |
| 473-601, gnl|Mm7|chr8 (63142620-63142492) | |
| 473-601, gnl|monDom2|scaffold_9 (39970054-39970187) | |
| 473-601, gnl|oryCun1|scaffold_198332 (112414-112281) | |
| 473-601, gnl|panTro1|chr3 (184055199-184055332) | |
| 473-601, gnl|rheMac2|chr5 (157519827-157519960) | |
| 473-601, gnl|rn3|chr16 (26711685-26711818) | |
| 473-601, gnl|tetNig1|chr18 (7628239-7628353) | |
| 473-601, gnl|xenTro1|scaffold_478 (254521-254388) | |
| 754-1719, gnl|bosTau2|chr17 (1996546-1995573) | |
| 754-1719, gnl|Hg17|chr4 (166620506-166621830) | |
| 754-1719, gnl|Mm7|chr8 (63139212-63138252) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-325, gnl|bosTau2|chr17 (2007951-2007662) | |
| 36-325, gnl|Hg17|chr4 (166612094-166612383) | |
| 36-325, gnl|Mm7|chr8 (63147940-63147652) | |
| 473-601, gnl|bosTau2|chr17 (2001167-2001039) | |
| 473-601, gnl|canFam2|chr15 (64320707-64320840) | |
| 473-601, gnl|dasNov1|scaffold_49788 (4966-4852) | |
| 473-601, gnl|echTel1|scaffold_323127 (58006-58139) | |
| 473-601, gnl|fr1|chrUn (18875272-18875405) | |
| 473-601, gnl|galGal2|chr4 (24427518-24427651) | |
| 473-601, gnl|hg17|chr4 (166617409-166617542) | |
| 473-601, gnl|Hg17|chr4 (166617408-166617536) | |
| 473-601, gnl|loxAfr1|scaffold_27966 (35341-35208) | |
| 473-601, gnl|mm7|chr8 (63142621-63142488) | |
| 473-601, gnl|Mm7|chr8 (63142620-63142492) | |
| 473-601, gnl|monDom2|scaffold_9 (39970054-39970187) | |
| 473-601, gnl|oryCun1|scaffold_198332 (112414-112281) | |
| 473-601, gnl|panTro1|chr3 (184055199-184055332) | |
| 473-601, gnl|rheMac2|chr5 (157519827-157519960) | |
| 473-601, gnl|rn3|chr16 (26711685-26711818) | |
| 473-601, gnl|tetNig1|chr18 (7628239-7628353) | |
| 473-601, gnl|xenTro1|scaffold_478 (254521-254388) | |
| 754-1719, gnl|bosTau2|chr17 (1996546-1995573) | |
| 754-1719, gnl|Hg17|chr4 (166620506-166621830) | |
| 754-1719, gnl|Mm7|chr8 (63139212-63138252) |
| Expressed library(ies): 42 entry(ies) | More info |
| Expressed library(ies): 42 entry(ies) | Help | Less info |
| sug (1.90937) | |
| spc (1.58712) | |
| tes (1.4547) | |
| lun (1.20391) | |
| cbe (0.956938) | |
| cte (0.87822) | |
| lin (0.873617) | |
| rec (0.865351) | |
| fco (0.628832) | |
| fbs (0.526039) | |
| ski (0.440205) | |
| csk (0.422238) | |
| tra (0.369276) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| sin (0.349895) | |
| eye (0.341006) | |
| cut (0.339847) | |
| fhi (0.339155) | |
| tbr (0.308356) | |
| hyp (0.285673) | |
| ebs (0.236602) | |
| pan (0.23596) | |
| ecc (0.23007) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sto (0.179824) | |
| duo (0.172801) | |
| mga (0.160205) | |
| spl (0.143184) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 42 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (1.90937) | |
| spc (1.58712) | |
| tes (1.4547) | |
| lun (1.20391) | |
| cbe (0.956938) | |
| cte (0.87822) | |
| lin (0.873617) | |
| rec (0.865351) | |
| fco (0.628832) | |
| fbs (0.526039) | |
| ski (0.440205) | |
| csk (0.422238) | |
| tra (0.369276) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| sin (0.349895) | |
| eye (0.341006) | |
| cut (0.339847) | |
| fhi (0.339155) | |
| tbr (0.308356) | |
| hyp (0.285673) | |
| ebs (0.236602) | |
| pan (0.23596) | |
| ecc (0.23007) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sto (0.179824) | |
| duo (0.172801) | |
| mga (0.160205) | |
| spl (0.143184) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| eje (0.0988338) |