Ss1.1-Pig4-TMW8049C15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACAGCTGGATGTACCTTCACTACACCCGGGGACTGGACCTCAGGTCACGTCGGGGCCCC TCTACCCTGCAATCATATCAAGCTTGTTGACGTCGAGGAGCTGAATTATTGGGCCAGCCA AGGTGAAGGAGAGATATGTGTGAGAGGACCAAATGTGTTCAAAGGTTACTTGAAAGATCC GGAGAGGACAAAGGAGGCCCTGGACAGCGAGGGCTGGCTTCACACTGGTGACATTGGGAA GTGGCTGCCGGCAGGAACTCTTAAAATTATTGATCGGAAGAAGCACATATTTAAACTCGC TCAGGGAGAGTACATTGCGCCTGAGAAGATCGAGAACATCTACATCCGGAGCGAGCCTGT GGCGCAAGTCTACGTGCACGGGGACAGCCTAAAGGCCTTTTTGGTGGGCATTGTCGTACC CGACCCGGAAGTCATGCCCTCTTGGGCCCAGAAGAGAGGAATTGAAGGGACGTACGCAGA GCTCTGCGCAAATAAGGAGCTGAAGAAAGCCATTTTGGAAGATATGGTGAGGTTAGGAAA AGAAAGCGGACTCCATTCTTTTGAACAGGTTAAAGCCATTTACATCCACTCTGACATGTT CTCAGTTCAAAATGGCTTGCTGACACCAACACTAAAGGCTAAGAGACCTGAGCTGAGAGA GTACTTCAAAAAACAAATAGAAGAGCTTTATTCAATCTCCATGTGACCTTCAAGAAAAGT TCTTTTCAGTATAATGGACAATGTAGCAATATTATAGCTATTCTTGAAAGTAATGAGTTC AGAATGACCGGGCAGAAAATGAAAAGCACGTGACCTTATGACTGAGCCTTTTCCTGTCCC AAGAGATCTTTAACCATATTTTCTCTCTCATCACCGAGTACACTTTATTTTTATTACAAT GATATTGTAGCAAGCTGCTAAAAATATCACAAATGGCATTGTAAAAATCAAGACTTTTCT CAAGAACTGTGTACCACTAAAAGTAATATATTCTCAATGTTCACAGAACTTCTATTAAAC ATAAAGGAGAAACATAAAAAAAAAATTGTACTTAATTATTTGTGGACTAGTAACCAGATA CAGCAAATATCTAGGCAATGTGGACTACCTCATTCAGTAACTGATGGTCAAAAATCACAA TTAAATCAGACTTAAAAAATTAAAACGAATACAGGAGCATGCTGAAACAAACCATAACTC ACATTCTGCCTAACTCCAGATTCTTTAAACATAACAGTCCTTATTGATGTGAAGATTTTT TTCGCCAGTTTTACTTTTATTTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACAGCTGGATGTACCTTCACTACACCCGGGGACTGGACCTCAGGTCACGTCGGGGCCCC TCTACCCTGCAATCATATCAAGCTTGTTGACGTCGAGGAGCTGAATTATTGGGCCAGCCA AGGTGAAGGAGAGATATGTGTGAGAGGACCAAATGTGTTCAAAGGTTACTTGAAAGATCC GGAGAGGACAAAGGAGGCCCTGGACAGCGAGGGCTGGCTTCACACTGGTGACATTGGGAA GTGGCTGCCGGCAGGAACTCTTAAAATTATTGATCGGAAGAAGCACATATTTAAACTCGC TCAGGGAGAGTACATTGCGCCTGAGAAGATCGAGAACATCTACATCCGGAGCGAGCCTGT GGCGCAAGTCTACGTGCACGGGGACAGCCTAAAGGCCTTTTTGGTGGGCATTGTCGTACC CGACCCGGAAGTCATGCCCTCTTGGGCCCAGAAGAGAGGAATTGAAGGGACGTACGCAGA GCTCTGCGCAAATAAGGAGCTGAAGAAAGCCATTTTGGAAGATATGGTGAGGTTAGGAAA AGAAAGCGGACTCCATTCTTTTGAACAGGTTAAAGCCATTTACATCCACTCTGACATGTT CTCAGTTCAAAATGGCTTGCTGACACCAACACTAAAGGCTAAGAGACCTGAGCTGAGAGA GTACTTCAAAAAACAAATAGAAGAGCTTTATTCAATCTCCATGTGACCTTCAAGAAAAGT TCTTTTCAGTATAATGGACAATGTAGCAATATTATAGCTATTCTTGAAAGTAATGAGTTC AGAATGACCGGGCAGAAAATGAAAAGCACGTGACCTTATGACTGAGCCTTTTCCTGTCCC AAGAGATCTTTAACCATATTTTCTCTCTCATCACCGAGTACACTTTATTTTTATTACAAT GATATTGTAGCAAGCTGCTAAAAATATCACAAATGGCATTGTAAAAATCAAGACTTTTCT CAAGAACTGTGTACCACTAAAAGTAATATATTCTCAATGTTCACAGAACTTCTATTAAAC ATAAAGGAGAAACATAAAAAAAAAATTGTACTTAATTATTTGTGGACTAGTAACCAGATA CAGCAAATATCTAGGCAATGTGGACTACCTCATTCAGTAACTGATGGTCAAAAATCACAA TTAAATCAGACTTAAAAAATTAAAACGAATACAGGAGCATGCTGAAACAAACCATAACTC ACATTCTGCCTAACTCCAGATTCTTTAAACATAACAGTCCTTATTGATGTGAAGATTTTT TTCGCCAGTTTTACTTTTATTTAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 132-251, gnl|bosTau2|chr7 (20586730-20586611) | |
| 132-251, gnl|canFam2|chr11 (23247780-23247872) | |
| 132-251, gnl|danRer3|chr9 (751797-751888) | |
| 132-251, gnl|dasNov1|scaffold_2449 (35741-35833) | |
| 132-251, gnl|echTel1|scaffold_91794 (1021-1113) | |
| 132-251, gnl|fr1|chrUn (285617471-285617559) | |
| 132-251, gnl|galGal2|chr13 (15674605-15674697) | |
| 132-251, gnl|hg17|chr5 (131330003-131330095) | |
| 132-251, gnl|Hg17|chr5 (131330126-131330007) | |
| 132-251, gnl|loxAfr1|scaffold_28570 (6282-6190) | |
| 132-251, gnl|mm7|chr11 (54302758-54302666) | |
| 132-251, gnl|Mm7|chr11 (54302633-54302752) | |
| 132-251, gnl|monDom2|scaffold_6 (94546668-94546576) | |
| 132-251, gnl|oryCun1|scaffold_208268 (83879-83787) | |
| 132-251, gnl|panTro1|chr4 (137662603-137662695) | |
| 132-251, gnl|rheMac2|chr6 (128394518-128394610) | |
| 132-251, gnl|rn3|chr10 (39775009-39774917) | |
| 132-251, gnl|tetNig1|chr7 (8348429-8348517) | |
| 132-251, gnl|xenTro1|scaffold_292 (490257-490165) | |
| 254-395, gnl|bosTau2|chr27 (10112086-10111945) | |
| 254-395, gnl|Hg17|chr4 (186056800-186056659) | |
| 254-395, gnl|Mm7|chr8 (45309660-45309801) | |
| 567-1284, gnl|bosTau2|chr7 (20573903-20573172) | |
| 567-1284, gnl|Hg17|chr5 (131317965-131317238) | |
| 567-1284, gnl|Mm7|chr11 (54317815-54318542) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 132-251, gnl|bosTau2|chr7 (20586730-20586611) | |
| 132-251, gnl|canFam2|chr11 (23247780-23247872) | |
| 132-251, gnl|danRer3|chr9 (751797-751888) | |
| 132-251, gnl|dasNov1|scaffold_2449 (35741-35833) | |
| 132-251, gnl|echTel1|scaffold_91794 (1021-1113) | |
| 132-251, gnl|fr1|chrUn (285617471-285617559) | |
| 132-251, gnl|galGal2|chr13 (15674605-15674697) | |
| 132-251, gnl|hg17|chr5 (131330003-131330095) | |
| 132-251, gnl|Hg17|chr5 (131330126-131330007) | |
| 132-251, gnl|loxAfr1|scaffold_28570 (6282-6190) | |
| 132-251, gnl|mm7|chr11 (54302758-54302666) | |
| 132-251, gnl|Mm7|chr11 (54302633-54302752) | |
| 132-251, gnl|monDom2|scaffold_6 (94546668-94546576) | |
| 132-251, gnl|oryCun1|scaffold_208268 (83879-83787) | |
| 132-251, gnl|panTro1|chr4 (137662603-137662695) | |
| 132-251, gnl|rheMac2|chr6 (128394518-128394610) | |
| 132-251, gnl|rn3|chr10 (39775009-39774917) | |
| 132-251, gnl|tetNig1|chr7 (8348429-8348517) | |
| 132-251, gnl|xenTro1|scaffold_292 (490257-490165) | |
| 254-395, gnl|bosTau2|chr27 (10112086-10111945) | |
| 254-395, gnl|Hg17|chr4 (186056800-186056659) | |
| 254-395, gnl|Mm7|chr8 (45309660-45309801) | |
| 567-1284, gnl|bosTau2|chr7 (20573903-20573172) | |
| 567-1284, gnl|Hg17|chr5 (131317965-131317238) | |
| 567-1284, gnl|Mm7|chr11 (54317815-54318542) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| mgm (2.5248) | |
| cte (0.87822) | |
| mga (0.801025) | |
| tes (0.415628) | |
| cga (0.279096) | |
| mgp (0.230681) | |
| hyp (0.142837) | |
| ova (0.129132) | |
| spc (0.113366) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgm (2.5248) | |
| cte (0.87822) | |
| mga (0.801025) | |
| tes (0.415628) | |
| cga (0.279096) | |
| mgp (0.230681) | |
| hyp (0.142837) | |
| ova (0.129132) | |
| spc (0.113366) |