Non-Coding RNA Search

Ss1.1-Pig4-TMW8049C19.5

Sequence:


               
               TGAGGCACAGGATTTAAAGAAGAAATTACGTCAAATCACAAGTCAACTGCAAGAAGCTCA
GGATCGACATACAGAGGCTGTGAAATGTACTGAGAAGACACAGGATCACGTGCAAAAGCT
TGAAATTGAAAATGCCAAGTTAAAAGTTACAGTCAAAAAGCAAGTGGGCAAAATTGAACA
GCTTCAGAAAAACCTGTTAAGTACAGGCTCGTCTGAGGATGAAAAGGAACAATTAAAGAA
ACTTACTGAGTTAAAACAATCTCTGGAAAGTAGTTTAGATCAAGAAATGAAGAAAAATGA
TGAATTAGAGAAAGAGCTTACTGGATTTAAGGAACTCTTAAAAATGACAAGAAGGAAGTT
AAATGAATATGAAAATGGAGAGTTTAATTCCCCTGGCGATTTAAAAACCAATCAAATTGA
AATGGATATTCAGATTAATCTGCTAAAACATAAGATTGATGATCTGACAGCAAAACTGGA
AACTGCCTCTTCAAAATGTCTACATCTGGATACCAAAAATCAAGTTCTTCAACAGGAATT
ATTATCTATGAAAGTAATGCAAAAGAAATGTAAAAAACTAGAGAAGAATAAATCAAAGTT
GGAACAAGAAGTAGTAAACCTCAAAAGTCACATAGAAATGAATACGGTAGAACGCAGCCA
AGTAGAGCAGTATAAACGGGAGATTGAAGAAAGAGCAAGACAGGAGTTAGTAGAAAAATT
AAAAGAAGTCAACTTATTTCTGCAGGCACAAGCAGCATCTCAAGAAAACTTAGAGCAGTT
ATGGGAGAATAATTATGCTTCAATAAGAAGTCAGATGGAACTTAGAATTAAAGATCTAGA
ATCTGAACTCTCCAAAATGAAATCTTTTCAAGAATATTCTGATAAAACAGAATTGGAAAA
ATATAAGCAACTCTATCTAGAAGAAGTAAAACTTGGAAAGTCGCTGGCAAATAAACTAAA
CAAGACTAATGAGAGGCTGGCCGAGATCAGTGCCAAGCTTCTGGTGGAGAAAGAGCAGAA
CAGATCGTTACTCCACACTCTTACTACAAGGCCAGTCCTGGAGCCGCCTTGTGCTAGAAA
TCTTAATAATGGTTTAATGTTCAATAGGAATCTTACTCCGAGAGAAAACTTAGTGATTTC
TACCTCAAGTCCACGCCCTTCAAATGACAGCATAGAGACTTACTTGACCAAGATGCAGCA
GGAGTTGCAAAAGAATATAAGTAGAGAACTAGCAGAAGCGGCTGCTGAATTTGAATCTGG
AATCTGTAGAACTTCTCCTCTAGGATCTACTGATGATCTAGTTTTGAAAACATCTCAAGA
ATATGTACAGATTTTGAAGAAAAATTATATGCTATGAAAGATAAATAGTAAACATTTATC
TACTGGACTGTTTACATAACATTTTAGTTGTTTTCCCTTAATTAAGATGTGAAAATCTTT
ATGAAAGGAAAATATTTTTGTATCATATATGTAAGATGAGAATTTATATAGTACTTTAAA
CCATGTTTTCTGCATCTGACTTACTTTTAAGCAGATTTTGTGAATAAAAACCAGCACTGT
TGAGTTTTACATAGTCCAACTCAGCCCGGACACCAGCAGTTTAATCAGCCCCCAAACAAT
CAAGGCTGTCATTAATATTTAGCAGTGTTGATTAGATAGCTTTCTTATAGTTTTCAGTTT
TTATCGCTATGTATAGACCTAAAAATTTAGACATTATTTGAATATACTGCTCCTGTGGCT
ATTGTCAATGTTTTCCTGTATTACAATTGTTATAGAGTCATTAAAACTCACTCTATATAA
CTTTAAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGCACAGGATTTAAAGAAGAAATTACGTCAAATCACAAGTCAACTGCAAGAAGCTCA
GGATCGACATACAGAGGCTGTGAAATGTACTGAGAAGACACAGGATCACGTGCAAAAGCT
TGAAATTGAAAATGCCAAGTTAAAAGTTACAGTCAAAAAGCAAGTGGGCAAAATTGAACA
GCTTCAGAAAAACCTGTTAAGTACAGGCTCGTCTGAGGATGAAAAGGAACAATTAAAGAA
ACTTACTGAGTTAAAACAATCTCTGGAAAGTAGTTTAGATCAAGAAATGAAGAAAAATGA
TGAATTAGAGAAAGAGCTTACTGGATTTAAGGAACTCTTAAAAATGACAAGAAGGAAGTT
AAATGAATATGAAAATGGAGAGTTTAATTCCCCTGGCGATTTAAAAACCAATCAAATTGA
AATGGATATTCAGATTAATCTGCTAAAACATAAGATTGATGATCTGACAGCAAAACTGGA
AACTGCCTCTTCAAAATGTCTACATCTGGATACCAAAAATCAAGTTCTTCAACAGGAATT
ATTATCTATGAAAGTAATGCAAAAGAAATGTAAAAAACTAGAGAAGAATAAATCAAAGTT
GGAACAAGAAGTAGTAAACCTCAAAAGTCACATAGAAATGAATACGGTAGAACGCAGCCA
AGTAGAGCAGTATAAACGGGAGATTGAAGAAAGAGCAAGACAGGAGTTAGTAGAAAAATT
AAAAGAAGTCAACTTATTTCTGCAGGCACAAGCAGCATCTCAAGAAAACTTAGAGCAGTT
ATGGGAGAATAATTATGCTTCAATAAGAAGTCAGATGGAACTTAGAATTAAAGATCTAGA
ATCTGAACTCTCCAAAATGAAATCTTTTCAAGAATATTCTGATAAAACAGAATTGGAAAA
ATATAAGCAACTCTATCTAGAAGAAGTAAAACTTGGAAAGTCGCTGGCAAATAAACTAAA
CAAGACTAATGAGAGGCTGGCCGAGATCAGTGCCAAGCTTCTGGTGGAGAAAGAGCAGAA
CAGATCGTTACTCCACACTCTTACTACAAGGCCAGTCCTGGAGCCGCCTTGTGCTAGAAA
TCTTAATAATGGTTTAATGTTCAATAGGAATCTTACTCCGAGAGAAAACTTAGTGATTTC
TACCTCAAGTCCACGCCCTTCAAATGACAGCATAGAGACTTACTTGACCAAGATGCAGCA
GGAGTTGCAAAAGAATATAAGTAGAGAACTAGCAGAAGCGGCTGCTGAATTTGAATCTGG
AATCTGTAGAACTTCTCCTCTAGGATCTACTGATGATCTAGTTTTGAAAACATCTCAAGA
ATATGTACAGATTTTGAAGAAAAATTATATGCTATGAAAGATAAATAGTAAACATTTATC
TACTGGACTGTTTACATAACATTTTAGTTGTTTTCCCTTAATTAAGATGTGAAAATCTTT
ATGAAAGGAAAATATTTTTGTATCATATATGTAAGATGAGAATTTATATAGTACTTTAAA
CCATGTTTTCTGCATCTGACTTACTTTTAAGCAGATTTTGTGAATAAAAACCAGCACTGT
TGAGTTTTACATAGTCCAACTCAGCCCGGACACCAGCAGTTTAATCAGCCCCCAAACAAT
CAAGGCTGTCATTAATATTTAGCAGTGTTGATTAGATAGCTTTCTTATAGTTTTCAGTTT
TTATCGCTATGTATAGACCTAAAAATTTAGACATTATTTGAATATACTGCTCCTGTGGCT
ATTGTCAATGTTTTCCTGTATTACAATTGTTATAGAGTCATTAAAACTCACTCTATATAA
CTTTAAGAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9NTD5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NTD5_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               748-946, - strand, RNAz p=0.945424

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               748-946, - strand, RNAz p=0.945424

Aligned organism(s): 25 entry(ies)

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Aligned organism(s): 25 entry(ies)

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               211-324, gnl|bosTau2|chr10 (21691460-21691573)
               

               
               211-324, gnl|Hg17|chr10 (27353495-27353382)
               

               
               211-324, gnl|Mm7|chr6 (118541357-118541244)
               


               
               452-746, gnl|bosTau2|chr13 (22726709-22726414)
               

               
               452-746, gnl|Hg17|chr10 (27346730-27346436)
               

               
               452-746, gnl|Mm7|chr6 (118534246-118533952)
               


               
               453-693, gnl|bosTau2|chr10 (21700616-21700856)
               

               
               453-693, gnl|Hg17|chr10 (27346729-27346489)
               

               
               453-693, gnl|Mm7|chr6 (118534245-118534008)
               


               
               748-964, gnl|bosTau2|chr10 (21702792-21703005)
               

               
               748-964, gnl|Hg17|chr10 (27343644-27343428)
               

               
               748-964, gnl|Mm7|chr6 (118533313-118533100)
               


               
               990-1192, gnl|bosTau2|chr26 (33356-33558)
               


               
               1005-1128, gnl|bosTau2|chr18 (40239743-40239866)
               

               
               1005-1128, gnl|hg17|chr10 (65400819-65402152)
               

               
               1005-1128, gnl|Mm7|chr6 (118532026-118531903)
               

               
               1005-1128, gnl|panTro1|chr8 (66379300-66380642)
               

               
               1005-1128, gnl|rheMac2|chr19 (41271778-41273107)
               


               
               1290-1500, gnl|bosTau2|chr10 (21708166-21708371)
               

               
               1290-1500, gnl|Hg17|chr10 (27334592-27334395)
               


               
               1551-1806, gnl|bosTau2|chr26 (39715-39955)
               

               
               1551-1806, gnl|Hg17|chr10 (27334339-27334079)
               


               
               1566-1805, gnl|bosTau2|chr13 (22719090-22718865)
               

               
               1566-1805, gnl|Hg17|chr10 (27334323-27334086)
               

               
               1566-1805, gnl|Mm7|chr6 (118527807-118527597)

Aligned organism(s): 25 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               211-324, gnl|bosTau2|chr10 (21691460-21691573)
               

               
               211-324, gnl|Hg17|chr10 (27353495-27353382)
               

               
               211-324, gnl|Mm7|chr6 (118541357-118541244)
               


               
               452-746, gnl|bosTau2|chr13 (22726709-22726414)
               

               
               452-746, gnl|Hg17|chr10 (27346730-27346436)
               

               
               452-746, gnl|Mm7|chr6 (118534246-118533952)
               


               
               453-693, gnl|bosTau2|chr10 (21700616-21700856)
               

               
               453-693, gnl|Hg17|chr10 (27346729-27346489)
               

               
               453-693, gnl|Mm7|chr6 (118534245-118534008)
               


               
               748-964, gnl|bosTau2|chr10 (21702792-21703005)
               

               
               748-964, gnl|Hg17|chr10 (27343644-27343428)
               

               
               748-964, gnl|Mm7|chr6 (118533313-118533100)
               


               
               990-1192, gnl|bosTau2|chr26 (33356-33558)
               


               
               1005-1128, gnl|bosTau2|chr18 (40239743-40239866)
               

               
               1005-1128, gnl|hg17|chr10 (65400819-65402152)
               

               
               1005-1128, gnl|Mm7|chr6 (118532026-118531903)
               

               
               1005-1128, gnl|panTro1|chr8 (66379300-66380642)
               

               
               1005-1128, gnl|rheMac2|chr19 (41271778-41273107)
               


               
               1290-1500, gnl|bosTau2|chr10 (21708166-21708371)
               

               
               1290-1500, gnl|Hg17|chr10 (27334592-27334395)
               


               
               1551-1806, gnl|bosTau2|chr26 (39715-39955)
               

               
               1551-1806, gnl|Hg17|chr10 (27334339-27334079)
               


               
               1566-1805, gnl|bosTau2|chr13 (22719090-22718865)
               

               
               1566-1805, gnl|Hg17|chr10 (27334323-27334086)
               

               
               1566-1805, gnl|Mm7|chr6 (118527807-118527597)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               cbe (0.239234)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               pty (0.142714)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               pty (0.142714)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	211-324, gnl\|bosTau2\|chr10 (21691460-21691573)
	211-324, gnl\|Hg17\|chr10 (27353495-27353382)
	211-324, gnl\|Mm7\|chr6 (118541357-118541244)

	452-746, gnl\|bosTau2\|chr13 (22726709-22726414)
	452-746, gnl\|Hg17\|chr10 (27346730-27346436)
	452-746, gnl\|Mm7\|chr6 (118534246-118533952)

	453-693, gnl\|bosTau2\|chr10 (21700616-21700856)
	453-693, gnl\|Hg17\|chr10 (27346729-27346489)
	453-693, gnl\|Mm7\|chr6 (118534245-118534008)

	748-964, gnl\|bosTau2\|chr10 (21702792-21703005)
	748-964, gnl\|Hg17\|chr10 (27343644-27343428)
	748-964, gnl\|Mm7\|chr6 (118533313-118533100)

	990-1192, gnl\|bosTau2\|chr26 (33356-33558)

	1005-1128, gnl\|bosTau2\|chr18 (40239743-40239866)
	1005-1128, gnl\|hg17\|chr10 (65400819-65402152)
	1005-1128, gnl\|Mm7\|chr6 (118532026-118531903)
	1005-1128, gnl\|panTro1\|chr8 (66379300-66380642)
	1005-1128, gnl\|rheMac2\|chr19 (41271778-41273107)

	1290-1500, gnl\|bosTau2\|chr10 (21708166-21708371)
	1290-1500, gnl\|Hg17\|chr10 (27334592-27334395)

	1551-1806, gnl\|bosTau2\|chr26 (39715-39955)
	1551-1806, gnl\|Hg17\|chr10 (27334339-27334079)

	1566-1805, gnl\|bosTau2\|chr13 (22719090-22718865)
	1566-1805, gnl\|Hg17\|chr10 (27334323-27334086)
	1566-1805, gnl\|Mm7\|chr6 (118527807-118527597)

	cbe (0.239234)
	gul (0.177588)
	sin (0.174948)
	pty (0.142714)
	ret (0.128733)
	tra (0.123092)