Ss1.1-Pig4-TMW8049D12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTTGCGGCCGGGGCCCAGCCATGACCCTGCGGGCTAGGGGCGCTCGGCTGCTGGGCGGC CTCCTGTTCTTCACTCTGCTCGCTGCCGGCGCCGCCCCGCTCAGCTGGGATCTCCCGGAG CCTCGCAGCCGAGCCGGCAAGATCCGAGTGCACCCGCGAGGCAATCTCTGGGCCACCGGT CACTTCATGGGCAAGAAGAGTCTGGAGCCCCCCAATCCATCCCTACTGGGGACAACGCAC CACATCTCTCTGAGGGACCAGAGACTGCAGCTGAGTCATGATCTGCTCAGGATCCTCCTG CAAAAGAAAGCTCTGGGCTTGAGCCTCAGCGGCCCAGCATCTCACACCCCGTACAGGAGG CTGCTGGTGCAAACGCTGGAGAAGTGATGCCACGAATCAGGAAGACTCCACAACATGGCT TAGGCTGTGCACCCCAGAGAAGGCTCTGAATGGGACCCTGGTGGTCCCATCTGGATGTAA ATCATGGGCTTAAATATCTGTAACTCCATTACTGTGATTTCTGGTTGAGTTGCCAGGAAT ATCACCAATGCAGATGCAAATGACGTCCCTGCTGTATGTCTTGCTTCCCTGTTGAAGTTG TGAATAAAATCCTGCTCTTTACATAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTTGCGGCCGGGGCCCAGCCATGACCCTGCGGGCTAGGGGCGCTCGGCTGCTGGGCGGC CTCCTGTTCTTCACTCTGCTCGCTGCCGGCGCCGCCCCGCTCAGCTGGGATCTCCCGGAG CCTCGCAGCCGAGCCGGCAAGATCCGAGTGCACCCGCGAGGCAATCTCTGGGCCACCGGT CACTTCATGGGCAAGAAGAGTCTGGAGCCCCCCAATCCATCCCTACTGGGGACAACGCAC CACATCTCTCTGAGGGACCAGAGACTGCAGCTGAGTCATGATCTGCTCAGGATCCTCCTG CAAAAGAAAGCTCTGGGCTTGAGCCTCAGCGGCCCAGCATCTCACACCCCGTACAGGAGG CTGCTGGTGCAAACGCTGGAGAAGTGATGCCACGAATCAGGAAGACTCCACAACATGGCT TAGGCTGTGCACCCCAGAGAAGGCTCTGAATGGGACCCTGGTGGTCCCATCTGGATGTAA ATCATGGGCTTAAATATCTGTAACTCCATTACTGTGATTTCTGGTTGAGTTGCCAGGAAT ATCACCAATGCAGATGCAAATGACGTCCCTGCTGTATGTCTTGCTTCCCTGTTGAAGTTG TGAATAAAATCCTGCTCTTTACATAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 234-348, + strand, RNAz p=0.74953 | |
| 353-455, - strand, RNAz p=0.914974 | |
| 505-621, + strand, RNAz p=0.631237 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 234-348, + strand, RNAz p=0.74953 | |
| 353-455, - strand, RNAz p=0.914974 | |
| 505-621, + strand, RNAz p=0.631237 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_021077, - |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 178-349, gnl|bosTau2|chr21 (12689878-12689707) | |
| 178-349, gnl|canFam2|chr3 (56790789-56791344) | |
| 178-349, gnl|dasNov1|scaffold_48839 (5157-4636) | |
| 178-349, gnl|echTel1|scaffold_302659 (44589-45116) | |
| 178-349, gnl|hg17|chr15 (83001405-83001960) | |
| 178-349, gnl|Hg17|chr15 (83001584-83001413) | |
| 178-349, gnl|loxAfr1|scaffold_20835 (33204-33707) | |
| 178-349, gnl|mm7|chr7 (76775572-76776038) | |
| 178-349, gnl|Mm7|chr7 (76775750-76775579) | |
| 178-349, gnl|oryCun1|scaffold_181056 (12118-12605) | |
| 178-349, gnl|panTro1|chr16 (83804532-83805087) | |
| 178-349, gnl|rheMac2|chr7 (64639929-64639373) | |
| 178-349, gnl|rn3|chr1 (137177679-137178132) | |
| 353-621, gnl|bosTau2|chr21 (12687668-12687409) | |
| 353-621, gnl|canFam2|chr3 (56788382-56788800) | |
| 353-621, gnl|dasNov1|scaffold_48839 (7243-6835) | |
| 353-621, gnl|echTel1|scaffold_302659 (42441-42833) | |
| 353-621, gnl|hg17|chr15 (82999115-82999548) | |
| 353-621, gnl|Hg17|chr15 (82999643-82999371) | |
| 353-621, gnl|loxAfr1|scaffold_20835 (30894-31328) | |
| 353-621, gnl|mm7|chr7 (76773483-76773851) | |
| 353-621, gnl|Mm7|chr7 (76773945-76773677) | |
| 353-621, gnl|oryCun1|scaffold_181056 (10167-10477) | |
| 353-621, gnl|panTro1|chr16 (83802210-83802643) | |
| 353-621, gnl|rheMac2|chr7 (64642217-64641784) | |
| 353-621, gnl|rn3|chr1 (137175671-137176050) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 178-349, gnl|bosTau2|chr21 (12689878-12689707) | |
| 178-349, gnl|canFam2|chr3 (56790789-56791344) | |
| 178-349, gnl|dasNov1|scaffold_48839 (5157-4636) | |
| 178-349, gnl|echTel1|scaffold_302659 (44589-45116) | |
| 178-349, gnl|hg17|chr15 (83001405-83001960) | |
| 178-349, gnl|Hg17|chr15 (83001584-83001413) | |
| 178-349, gnl|loxAfr1|scaffold_20835 (33204-33707) | |
| 178-349, gnl|mm7|chr7 (76775572-76776038) | |
| 178-349, gnl|Mm7|chr7 (76775750-76775579) | |
| 178-349, gnl|oryCun1|scaffold_181056 (12118-12605) | |
| 178-349, gnl|panTro1|chr16 (83804532-83805087) | |
| 178-349, gnl|rheMac2|chr7 (64639929-64639373) | |
| 178-349, gnl|rn3|chr1 (137177679-137178132) | |
| 353-621, gnl|bosTau2|chr21 (12687668-12687409) | |
| 353-621, gnl|canFam2|chr3 (56788382-56788800) | |
| 353-621, gnl|dasNov1|scaffold_48839 (7243-6835) | |
| 353-621, gnl|echTel1|scaffold_302659 (42441-42833) | |
| 353-621, gnl|hg17|chr15 (82999115-82999548) | |
| 353-621, gnl|Hg17|chr15 (82999643-82999371) | |
| 353-621, gnl|loxAfr1|scaffold_20835 (30894-31328) | |
| 353-621, gnl|mm7|chr7 (76773483-76773851) | |
| 353-621, gnl|Mm7|chr7 (76773945-76773677) | |
| 353-621, gnl|oryCun1|scaffold_181056 (10167-10477) | |
| 353-621, gnl|panTro1|chr16 (83802210-83802643) | |
| 353-621, gnl|rheMac2|chr7 (64642217-64641784) | |
| 353-621, gnl|rn3|chr1 (137175671-137176050) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) |